Wall clock time and date at job start Tue Mar 31 2020 13:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00145 * 2 1 4 4 H 1.48503 * 109.47226 * 240.00111 * 3 2 1 5 5 H 1.48501 * 109.46507 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47478 * 119.99384 * 3 2 1 7 7 C 1.37880 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99949 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00076 * 0.02562 * 7 2 1 10 10 O 1.42902 * 110.88524 * 62.42488 * 9 7 2 11 11 C 1.55154 * 111.03757 * 186.32773 * 9 7 2 12 12 C 1.54337 * 103.02100 * 153.39629 * 11 9 7 13 13 N 1.47019 * 107.26259 * 338.13840 * 12 11 9 14 14 C 1.34779 * 125.64864 * 178.84605 * 13 12 11 15 15 O 1.21582 * 120.00439 * 179.69265 * 14 13 12 16 16 N 1.34785 * 119.99822 * 359.70067 * 14 13 12 17 17 C 1.46493 * 119.99957 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.47033 * 179.97438 * 17 16 14 19 19 C 1.50706 * 109.46932 * 180.02562 * 18 17 16 20 20 C 1.38216 * 120.01546 * 100.00131 * 19 18 17 21 21 C 1.38217 * 120.02581 * 179.97438 * 20 19 18 22 22 C 1.38265 * 120.05343 * 0.02562 * 21 20 19 23 23 C 1.38181 * 120.02597 * 359.97438 * 22 21 20 24 24 C 1.38443 * 120.00897 * 279.97698 * 19 18 17 25 25 F 1.35099 * 120.02540 * 0.04305 * 24 19 18 26 26 C 1.47422 * 108.70462 * 358.58892 * 13 12 11 27 27 H 0.96992 * 120.00241 * 0.02562 * 1 2 3 28 28 H 0.96700 * 113.99885 * 297.56833 * 10 9 7 29 29 H 1.08997 * 110.72334 * 271.95339 * 11 9 7 30 30 H 1.09000 * 110.72029 * 35.22973 * 11 9 7 31 31 H 1.09001 * 109.99102 * 218.66626 * 12 11 9 32 32 H 1.08998 * 109.78425 * 97.49900 * 12 11 9 33 33 H 0.96999 * 120.00048 * 359.97438 * 16 14 13 34 34 H 1.09003 * 109.47001 * 60.00132 * 17 16 14 35 35 H 1.08994 * 109.47779 * 300.00214 * 17 16 14 36 36 H 1.08997 * 109.47211 * 60.00596 * 18 17 16 37 37 H 1.09002 * 109.46776 * 300.00112 * 18 17 16 38 38 H 1.08000 * 119.98383 * 0.02562 * 20 19 18 39 39 H 1.07997 * 119.97673 * 179.97438 * 21 20 19 40 40 H 1.07999 * 119.99414 * 179.72576 * 22 21 20 41 41 H 1.08002 * 120.01438 * 180.02562 * 23 22 21 42 42 H 1.09005 * 110.36607 * 143.19568 * 26 13 12 43 43 H 1.08998 * 110.36872 * 265.40315 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 0.4616 -2.6316 -1.1832 11 6 2.2191 -3.7011 0.1608 12 6 1.3287 -4.7802 0.8125 13 7 0.2055 -4.0865 1.4598 14 6 -0.8078 -4.6797 2.1214 15 8 -1.6841 -4.0033 2.6243 16 7 -0.8498 -6.0229 2.2256 17 6 -1.9510 -6.6676 2.9451 18 6 -1.7605 -8.1855 2.9148 19 6 -2.8937 -8.8488 3.6545 20 6 -3.9505 -9.3972 2.9525 21 6 -4.9896 -10.0060 3.6307 22 6 -4.9735 -10.0669 5.0119 23 6 -3.9180 -9.5193 5.7159 24 6 -2.8762 -8.9095 5.0375 25 9 -1.8439 -8.3734 5.7247 26 6 0.3746 -2.6343 1.2706 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2244 -1.9564 -1.2760 29 1 2.5843 -4.0343 -0.8106 30 1 3.0492 -3.4427 0.8182 31 1 1.9000 -5.3351 1.5567 32 1 0.9533 -5.4600 0.0477 33 1 -0.1509 -6.5625 1.8241 34 1 -2.8967 -6.4109 2.4677 35 1 -1.9606 -6.3229 3.9791 36 1 -0.8149 -8.4426 3.3919 37 1 -1.7512 -8.5298 1.8806 38 1 -3.9638 -9.3506 1.8736 39 1 -5.8151 -10.4339 3.0814 40 1 -5.7881 -10.5389 5.5411 41 1 -3.9055 -9.5673 6.7948 42 1 -0.5930 -2.1566 1.1164 43 1 0.8803 -2.1959 2.1309 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591897398.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:32 Heat of formation + Delta-G solvation = -123.021236 kcal Electronic energy + Delta-G solvation = -26677.375538 eV Core-core repulsion = 22635.778949 eV Total energy + Delta-G solvation = -4041.596589 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -49.91128 -41.27643 -40.04624 -39.13405 -36.54701 -36.03704 -34.22383 -33.73480 -31.78027 -31.43197 -29.74811 -29.16336 -26.92465 -24.88700 -23.84218 -23.71377 -22.24590 -21.46293 -20.97541 -19.27512 -18.83396 -18.45550 -17.54300 -17.44020 -16.97715 -16.91451 -16.56915 -16.49785 -16.19915 -15.66989 -15.55082 -15.07727 -14.83599 -14.62419 -14.59713 -14.16790 -14.09746 -13.77219 -13.56561 -13.50059 -13.29560 -12.82298 -12.77581 -12.75302 -12.52458 -12.32547 -12.27938 -12.21058 -12.07872 -11.92375 -11.35820 -11.17885 -10.65359 -10.33954 -10.23344 -9.91537 -9.61238 -9.33626 -8.23443 -6.40905 0.17672 0.26994 1.43783 1.44327 1.52657 1.66486 2.12921 2.38964 2.64483 3.02293 3.06736 3.32391 3.72814 3.76631 3.81099 3.94208 4.04348 4.11062 4.18998 4.21705 4.35548 4.40797 4.42765 4.48615 4.63324 4.77035 4.81634 4.89005 5.01423 5.07949 5.10967 5.13352 5.25045 5.30446 5.37842 5.41857 5.45028 5.47438 5.49768 5.76730 5.96932 6.05888 6.18119 6.66354 7.05346 7.28286 7.35758 7.55278 8.81511 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.029115 B = 0.002325 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.486910 B =12042.543779 C =12147.152089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.024 3.976 3 Si 0.964 3.036 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.270 1.270 7 C -0.556 4.556 8 H 0.070 0.930 9 C 0.233 3.767 10 O -0.586 6.586 11 C -0.110 4.110 12 C 0.106 3.894 13 N -0.633 5.633 14 C 0.709 3.291 15 O -0.647 6.647 16 N -0.728 5.728 17 C 0.149 3.851 18 C -0.078 4.078 19 C -0.128 4.128 20 C -0.090 4.090 21 C -0.128 4.128 22 C -0.093 4.093 23 C -0.164 4.164 24 C 0.073 3.927 25 F -0.153 7.153 26 C 0.127 3.873 27 H 0.269 0.731 28 H 0.372 0.628 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.411 0.589 34 H 0.055 0.945 35 H 0.041 0.959 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.153 0.847 39 H 0.157 0.843 40 H 0.160 0.840 41 H 0.145 0.855 42 H 0.043 0.957 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.689 -23.616 6.248 25.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.177 4.177 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.195 1.195 7 C -0.594 4.594 8 H 0.088 0.912 9 C 0.192 3.808 10 O -0.394 6.394 11 C -0.148 4.148 12 C -0.016 4.016 13 N -0.370 5.370 14 C 0.410 3.590 15 O -0.530 6.530 16 N -0.385 5.385 17 C 0.025 3.975 18 C -0.115 4.115 19 C -0.130 4.130 20 C -0.108 4.108 21 C -0.146 4.146 22 C -0.110 4.110 23 C -0.182 4.182 24 C 0.054 3.946 25 F -0.131 7.131 26 C 0.003 3.997 27 H 0.078 0.922 28 H 0.221 0.779 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.248 0.752 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.105 0.895 37 H 0.128 0.872 38 H 0.170 0.830 39 H 0.175 0.825 40 H 0.177 0.823 41 H 0.163 0.837 42 H 0.061 0.939 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.088 -23.569 6.587 25.218 hybrid contribution 0.322 1.868 0.345 1.927 sum -5.766 -21.701 6.932 23.499 Atomic orbital electron populations 1.69842 1.07217 1.28423 1.49998 1.25856 0.95747 1.02925 0.93123 0.85511 0.78275 0.78295 0.78961 1.19315 1.21252 1.19512 1.21774 0.93975 0.91203 1.52482 0.91190 1.19856 0.87167 0.93234 0.80521 1.86088 1.51437 1.56774 1.45078 1.22596 0.97155 0.93710 1.01343 1.22149 0.87091 0.95490 0.96860 1.47873 1.24414 1.08675 1.56019 1.15764 0.81270 0.82760 0.79178 1.90846 1.41572 1.64863 1.55704 1.44865 1.29697 1.03526 1.60459 1.21076 0.88896 0.92138 0.95395 1.20630 0.97130 0.91179 1.02599 1.19854 0.98921 1.02539 0.91652 1.21325 0.92102 0.95908 1.01447 1.21621 0.99178 0.99117 0.94664 1.21422 0.97545 0.97447 0.94617 1.21434 0.94234 1.00743 1.01806 1.18008 0.86962 0.99493 0.90182 1.91467 1.57407 1.84373 1.79894 1.22673 1.00085 0.77757 0.99135 0.92221 0.77925 0.89416 0.89344 0.89193 0.90530 0.75196 0.92669 0.94045 0.89501 0.87179 0.82982 0.82501 0.82280 0.83721 0.93869 0.94460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.98 10.69 21.45 0.23 -50.75 16 2 C 0.02 1.30 5.29 84.66 0.45 1.74 16 3 Si 0.96 42.26 29.54 68.60 2.03 44.28 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 7 C -0.56 -29.13 8.27 25.60 0.21 -28.92 16 8 H 0.07 3.52 7.79 -2.91 -0.02 3.49 16 9 C 0.23 11.34 0.87 -10.15 -0.01 11.33 16 10 O -0.59 -30.26 13.16 -148.98 -1.96 -32.23 16 11 C -0.11 -4.12 6.13 31.79 0.19 -3.93 16 12 C 0.11 3.41 6.15 86.73 0.53 3.95 16 13 N -0.63 -26.67 3.33 -829.74 -2.76 -29.43 16 14 C 0.71 30.04 8.49 179.05 1.52 31.56 16 15 O -0.65 -33.92 16.60 -3.97 -0.07 -33.99 16 16 N -0.73 -21.81 5.52 -478.54 -2.64 -24.45 16 17 C 0.15 4.02 5.65 86.38 0.49 4.51 16 18 C -0.08 -1.39 5.18 29.85 0.15 -1.24 16 19 C -0.13 -2.34 5.14 -19.82 -0.10 -2.45 16 20 C -0.09 -1.24 9.67 22.26 0.22 -1.02 16 21 C -0.13 -1.41 10.04 22.27 0.22 -1.19 16 22 C -0.09 -1.06 10.04 22.26 0.22 -0.84 16 23 C -0.16 -2.61 10.03 22.31 0.22 -2.38 16 24 C 0.07 1.50 7.24 22.38 0.16 1.66 16 25 F -0.15 -3.79 16.66 44.97 0.75 -3.04 16 26 C 0.13 6.46 5.38 86.85 0.47 6.92 16 27 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 28 H 0.37 20.29 7.56 -74.06 -0.56 19.73 16 29 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 30 H 0.09 3.09 8.03 -2.39 -0.02 3.07 16 31 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.41 9.28 7.46 -92.71 -0.69 8.59 16 34 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.09 1.49 7.95 -2.39 -0.02 1.47 16 37 H 0.11 1.42 8.00 -2.39 -0.02 1.40 16 38 H 0.15 1.46 8.04 -2.91 -0.02 1.44 16 39 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 40 H 0.16 0.87 8.06 -2.91 -0.02 0.85 16 41 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 42 H 0.04 2.53 7.33 -2.38 -0.02 2.51 16 43 H 0.04 1.98 8.03 -2.39 -0.02 1.96 16 Total: -1.00 -72.43 363.78 0.33 -72.10 By element: Atomic # 1 Polarization: 37.99 SS G_CDS: -0.21 Total: 37.78 kcal Atomic # 6 Polarization: 14.76 SS G_CDS: 4.96 Total: 19.72 kcal Atomic # 7 Polarization: -99.46 SS G_CDS: -5.17 Total: -104.63 kcal Atomic # 8 Polarization: -64.19 SS G_CDS: -2.03 Total: -66.21 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.75 Total: -3.04 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Total: -72.43 0.33 -72.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591897398.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.920 kcal (2) G-P(sol) polarization free energy of solvation -72.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds