Wall clock time and date at job start Tue Mar 31 2020 13:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00056 * 2 1 4 4 C 1.53004 * 109.47068 * 180.02562 * 3 2 1 5 5 N 1.46891 * 109.47314 * 66.95087 * 4 3 2 6 6 C 1.46898 * 111.00020 * 287.15311 * 5 4 3 7 7 C 1.50699 * 109.47420 * 301.36484 * 6 5 4 8 8 H 1.08004 * 119.99952 * 4.47993 * 7 6 5 9 9 C 1.37878 * 120.00535 * 184.46963 * 7 6 5 10 10 N 1.31514 * 120.00226 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99699 * 0.02562 * 9 7 6 12 12 H 1.48508 * 109.47137 * 89.99637 * 11 9 7 13 13 H 1.48500 * 109.47316 * 209.99625 * 11 9 7 14 14 H 1.48502 * 109.47437 * 329.99613 * 11 9 7 15 15 C 1.38584 * 111.00211 * 163.20001 * 5 4 3 16 16 N 1.31223 * 126.47052 * 19.94194 * 15 5 4 17 17 N 1.28526 * 109.85889 * 179.97438 * 16 15 5 18 18 C 1.30295 * 110.05246 * 0.02562 * 17 16 15 19 19 C 1.50701 * 126.34264 * 179.97438 * 18 17 16 20 20 C 1.52989 * 109.47523 * 90.01951 * 19 18 17 21 21 F 1.39909 * 109.47094 * 59.99811 * 20 19 18 22 22 F 1.39905 * 109.47520 * 179.97438 * 20 19 18 23 23 F 1.39903 * 109.47420 * 300.00190 * 20 19 18 24 24 N 1.36443 * 126.47828 * 199.91648 * 15 5 4 25 25 C 1.46502 * 127.13345 * 0.02562 * 24 15 5 26 26 H 1.09000 * 109.47342 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46904 * 300.00169 * 1 2 3 28 28 H 1.09001 * 109.47081 * 59.99454 * 1 2 3 29 29 H 1.08994 * 109.47109 * 60.00411 * 3 2 1 30 30 H 1.08996 * 109.47325 * 300.00009 * 3 2 1 31 31 H 1.09006 * 109.46824 * 306.94806 * 4 3 2 32 32 H 1.09000 * 109.47133 * 186.95769 * 4 3 2 33 33 H 1.09001 * 109.47439 * 61.36694 * 6 5 4 34 34 H 1.09005 * 109.47299 * 181.37110 * 6 5 4 35 35 H 0.97002 * 119.99713 * 180.02562 * 10 9 7 36 36 H 1.09001 * 109.46730 * 210.02081 * 19 18 17 37 37 H 1.09002 * 109.47265 * 330.01635 * 19 18 17 38 38 H 1.08997 * 109.47408 * 95.02846 * 25 24 15 39 39 H 1.09002 * 109.47040 * 215.02849 * 25 24 15 40 40 H 1.09000 * 109.47337 * 335.02679 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9803 0.6056 -1.2753 6 6 3.6604 -0.8265 -1.3431 7 6 4.3249 -1.5446 -0.1969 8 1 4.8646 -0.9835 0.5517 9 6 4.2436 -2.9178 -0.1036 10 7 4.8231 -3.5444 0.8969 11 14 3.3104 -3.8883 -1.3985 12 1 4.2361 -4.2660 -2.4966 13 1 2.7439 -5.1159 -0.7843 14 1 2.2094 -3.0544 -1.9441 15 6 5.3348 0.8218 -1.4731 16 7 6.2215 1.1113 -0.5502 17 7 7.3821 1.2444 -1.0861 18 6 7.3053 1.0498 -2.3722 19 6 8.4455 1.1170 -3.3552 20 6 9.0843 -0.2666 -3.4907 21 9 8.1275 -1.1792 -3.9479 22 9 10.1425 -0.2044 -4.4038 23 9 9.5667 -0.6816 -2.2448 24 7 5.9985 0.7732 -2.6643 25 6 5.4289 0.4850 -3.9829 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.6887 1.8463 0.8900 30 1 1.6887 1.8464 -0.8899 31 1 3.8492 0.5399 0.8205 32 1 3.9783 2.1728 0.1238 33 1 2.5806 -0.9610 -1.2791 34 1 4.0222 -1.2354 -2.2866 35 1 4.7663 -4.5105 0.9623 36 1 8.0696 1.4403 -4.3260 37 1 9.1909 1.8280 -2.9991 38 1 5.1897 1.4209 -4.4879 39 1 6.1522 -0.0737 -4.5769 40 1 4.5211 -0.1066 -3.8652 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592398796.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:37 Heat of formation + Delta-G solvation = -96.008674 kcal Electronic energy + Delta-G solvation = -29218.358669 eV Core-core repulsion = 24655.996654 eV Total energy + Delta-G solvation = -4562.362015 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.04001 -47.60109 -47.44216 -42.50377 -38.10248 -36.32347 -34.71249 -32.89362 -32.33493 -29.66262 -28.62511 -27.31393 -26.64476 -25.65399 -23.95320 -22.62226 -22.00142 -20.52660 -19.79638 -18.48097 -18.41216 -17.64626 -17.22519 -16.58840 -16.05752 -15.95031 -15.63085 -15.02199 -14.68687 -14.44203 -14.40657 -14.16162 -13.95860 -13.93208 -13.86659 -13.65639 -13.60982 -13.13452 -12.98897 -12.64208 -12.39283 -12.18629 -12.03757 -11.89592 -11.50610 -11.22856 -11.09217 -11.06271 -10.76109 -10.39485 -10.15843 -9.91875 -9.74841 -9.48314 -9.17020 -8.82100 -8.52496 -7.60848 -6.03261 -4.02489 1.96337 2.61831 2.82320 3.26107 3.33483 3.35412 3.38579 3.78295 3.91188 4.00530 4.24429 4.40371 4.45817 4.56824 4.77310 4.94063 5.11815 5.22249 5.28146 5.44512 5.54447 5.56239 5.63386 5.71546 5.76197 5.80935 5.89352 5.97290 6.13677 6.42306 6.65482 6.71627 6.96736 7.16062 7.30245 7.63483 7.71851 7.93909 8.46008 9.03215 9.24174 9.56202 11.09764 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013998 B = 0.005094 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.868506 B = 5495.022994 C = 6463.899838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.071 3.929 4 C 0.070 3.930 5 N -0.459 5.459 6 C 0.155 3.845 7 C -0.542 4.542 8 H 0.086 0.914 9 C 0.079 3.921 10 N -0.892 5.892 11 Si 0.869 3.131 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.262 1.262 15 C 0.416 3.584 16 N -0.315 5.315 17 N -0.252 5.252 18 C 0.123 3.877 19 C -0.062 4.062 20 C 0.455 3.545 21 F -0.181 7.181 22 F -0.184 7.184 23 F -0.168 7.168 24 N -0.471 5.471 25 C 0.076 3.924 26 H 0.080 0.920 27 H 0.034 0.966 28 H 0.033 0.967 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.014 0.986 35 H 0.262 0.738 36 H 0.121 0.879 37 H 0.140 0.860 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.353 11.161 -12.113 16.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.279 6.279 3 C -0.007 4.007 4 C -0.057 4.057 5 N -0.184 5.184 6 C 0.031 3.969 7 C -0.581 4.581 8 H 0.104 0.896 9 C -0.124 4.124 10 N -0.530 5.530 11 Si 0.696 3.304 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.187 1.187 15 C 0.061 3.939 16 N -0.160 5.160 17 N -0.094 5.094 18 C -0.144 4.144 19 C -0.103 4.103 20 C 0.399 3.601 21 F -0.163 7.163 22 F -0.166 7.166 23 F -0.149 7.149 24 N -0.165 5.165 25 C -0.068 4.068 26 H 0.099 0.901 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.032 0.968 35 H 0.072 0.928 36 H 0.140 0.860 37 H 0.158 0.842 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.074 11.296 -11.073 15.818 hybrid contribution -0.787 -1.520 -1.458 2.249 sum -0.713 9.776 -12.531 15.909 Atomic orbital electron populations 1.22685 0.82918 1.02278 0.98956 1.88264 1.17930 1.26805 1.94861 1.22501 0.93544 0.85264 0.99351 1.22053 0.92564 0.99982 0.91106 1.59407 1.04935 1.19434 1.34575 1.20661 0.99829 0.79640 0.96772 1.21536 1.33953 0.92642 1.09971 0.89575 1.24828 0.94778 0.97578 0.95248 1.69918 1.43723 1.08782 1.30594 0.86961 0.80897 0.80210 0.82297 1.20605 1.21126 1.18664 1.22639 0.92019 0.97927 0.81352 1.74752 0.94617 1.23421 1.23213 1.73894 1.16849 1.15653 1.02986 1.23275 0.84426 1.11781 0.94884 1.20942 0.95646 0.93627 1.00049 1.20421 0.76694 0.88756 0.74180 1.93203 1.63780 1.70235 1.89033 1.93184 1.58890 1.96719 1.67807 1.93278 1.88418 1.91662 1.41539 1.45805 1.07775 1.54082 1.08867 1.22083 1.01138 1.02464 0.81078 0.90131 0.94740 0.94839 0.93078 0.93463 0.89394 0.90163 0.90498 0.96810 0.92764 0.86046 0.84204 0.90400 0.89833 0.88393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.51 16 2 O -0.36 -6.65 7.73 -35.23 -0.27 -6.92 16 3 C 0.07 1.12 6.23 37.16 0.23 1.36 16 4 C 0.07 1.34 4.83 -3.83 -0.02 1.32 16 5 N -0.46 -9.31 4.67 -175.88 -0.82 -10.13 16 6 C 0.16 3.61 3.61 -4.98 -0.02 3.59 16 7 C -0.54 -15.24 8.25 -34.44 -0.28 -15.53 16 8 H 0.09 2.72 6.53 -52.48 -0.34 2.38 16 9 C 0.08 2.29 5.47 -17.82 -0.10 2.20 16 10 N -0.89 -27.93 13.96 55.43 0.77 -27.16 16 11 Si 0.87 21.47 27.38 -169.99 -4.65 16.82 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.26 -6.07 6.67 56.52 0.38 -5.69 16 15 C 0.42 8.68 6.01 -318.88 -1.92 6.76 16 16 N -0.31 -7.20 11.29 30.31 0.34 -6.86 16 17 N -0.25 -5.28 12.18 32.99 0.40 -4.88 16 18 C 0.12 2.08 6.79 -154.02 -1.05 1.03 16 19 C -0.06 -0.70 5.57 -27.89 -0.16 -0.86 16 20 C 0.45 6.20 3.15 37.15 0.12 6.32 16 21 F -0.18 -2.80 15.71 2.25 0.04 -2.76 16 22 F -0.18 -2.19 17.32 2.25 0.04 -2.15 16 23 F -0.17 -2.87 17.03 2.25 0.04 -2.83 16 24 N -0.47 -8.19 3.21 -121.46 -0.39 -8.58 16 25 C 0.08 0.96 10.84 59.85 0.65 1.61 16 26 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 2.01 5.97 -51.93 -0.31 1.70 16 32 H 0.08 1.40 7.81 -51.93 -0.41 0.99 16 33 H 0.08 1.80 4.84 -51.93 -0.25 1.55 16 34 H 0.01 0.32 5.84 -51.93 -0.30 0.02 16 35 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 36 H 0.12 0.91 7.98 -51.93 -0.41 0.49 16 37 H 0.14 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.92 6.71 -51.93 -0.35 0.57 16 40 H 0.10 1.35 6.54 -51.93 -0.34 1.01 16 LS Contribution 340.65 15.07 5.13 5.13 Total: -1.00 -35.81 340.65 -5.63 -41.44 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -4.83 Total: -0.42 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: -1.43 Total: 9.30 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: 0.31 Total: -57.61 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.27 Total: -6.92 kcal Atomic # 9 Polarization: -7.86 SS G_CDS: 0.11 Total: -7.74 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.65 Total: 16.82 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.81 -5.63 -41.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592398796.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.570 kcal (2) G-P(sol) polarization free energy of solvation -35.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds