Wall clock time and date at job start Tue Mar 31 2020 13:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00056 * 2 1 4 4 C 1.53004 * 109.47068 * 180.02562 * 3 2 1 5 5 N 1.46891 * 109.47314 * 66.95087 * 4 3 2 6 6 C 1.46898 * 111.00020 * 287.15311 * 5 4 3 7 7 C 1.50699 * 109.47420 * 301.36484 * 6 5 4 8 8 H 1.08004 * 119.99952 * 4.47993 * 7 6 5 9 9 C 1.37878 * 120.00535 * 184.46963 * 7 6 5 10 10 N 1.31514 * 120.00226 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99699 * 0.02562 * 9 7 6 12 12 H 1.48508 * 109.47137 * 89.99637 * 11 9 7 13 13 H 1.48500 * 109.47316 * 209.99625 * 11 9 7 14 14 H 1.48502 * 109.47437 * 329.99613 * 11 9 7 15 15 C 1.38584 * 111.00211 * 163.20001 * 5 4 3 16 16 N 1.31223 * 126.47052 * 19.94194 * 15 5 4 17 17 N 1.28526 * 109.85889 * 179.97438 * 16 15 5 18 18 C 1.30295 * 110.05246 * 0.02562 * 17 16 15 19 19 C 1.50701 * 126.34264 * 179.97438 * 18 17 16 20 20 C 1.52989 * 109.47523 * 90.01951 * 19 18 17 21 21 F 1.39909 * 109.47094 * 59.99811 * 20 19 18 22 22 F 1.39905 * 109.47520 * 179.97438 * 20 19 18 23 23 F 1.39903 * 109.47420 * 300.00190 * 20 19 18 24 24 N 1.36443 * 126.47828 * 199.91648 * 15 5 4 25 25 C 1.46502 * 127.13345 * 0.02562 * 24 15 5 26 26 H 1.09000 * 109.47342 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46904 * 300.00169 * 1 2 3 28 28 H 1.09001 * 109.47081 * 59.99454 * 1 2 3 29 29 H 1.08994 * 109.47109 * 60.00411 * 3 2 1 30 30 H 1.08996 * 109.47325 * 300.00009 * 3 2 1 31 31 H 1.09006 * 109.46824 * 306.94806 * 4 3 2 32 32 H 1.09000 * 109.47133 * 186.95769 * 4 3 2 33 33 H 1.09001 * 109.47439 * 61.36694 * 6 5 4 34 34 H 1.09005 * 109.47299 * 181.37110 * 6 5 4 35 35 H 0.97002 * 119.99713 * 180.02562 * 10 9 7 36 36 H 1.09001 * 109.46730 * 210.02081 * 19 18 17 37 37 H 1.09002 * 109.47265 * 330.01635 * 19 18 17 38 38 H 1.08997 * 109.47408 * 95.02846 * 25 24 15 39 39 H 1.09002 * 109.47040 * 215.02849 * 25 24 15 40 40 H 1.09000 * 109.47337 * 335.02679 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9803 0.6056 -1.2753 6 6 3.6604 -0.8265 -1.3431 7 6 4.3249 -1.5446 -0.1969 8 1 4.8646 -0.9835 0.5517 9 6 4.2436 -2.9178 -0.1036 10 7 4.8231 -3.5444 0.8969 11 14 3.3104 -3.8883 -1.3985 12 1 4.2361 -4.2660 -2.4966 13 1 2.7439 -5.1159 -0.7843 14 1 2.2094 -3.0544 -1.9441 15 6 5.3348 0.8218 -1.4731 16 7 6.2215 1.1113 -0.5502 17 7 7.3821 1.2444 -1.0861 18 6 7.3053 1.0498 -2.3722 19 6 8.4455 1.1170 -3.3552 20 6 9.0843 -0.2666 -3.4907 21 9 8.1275 -1.1792 -3.9479 22 9 10.1425 -0.2044 -4.4038 23 9 9.5667 -0.6816 -2.2448 24 7 5.9985 0.7732 -2.6643 25 6 5.4289 0.4850 -3.9829 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.6887 1.8463 0.8900 30 1 1.6887 1.8464 -0.8899 31 1 3.8492 0.5399 0.8205 32 1 3.9783 2.1728 0.1238 33 1 2.5806 -0.9610 -1.2791 34 1 4.0222 -1.2354 -2.2866 35 1 4.7663 -4.5105 0.9623 36 1 8.0696 1.4403 -4.3260 37 1 9.1909 1.8280 -2.9991 38 1 5.1897 1.4209 -4.4879 39 1 6.1522 -0.0737 -4.5769 40 1 4.5211 -0.1066 -3.8652 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592398796.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:37 Heat of formation + Delta-G solvation = -121.302518 kcal Electronic energy + Delta-G solvation = -29219.455492 eV Core-core repulsion = 24655.996654 eV Total energy + Delta-G solvation = -4563.458838 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.15999 -48.68478 -48.63876 -43.96106 -39.55256 -37.76261 -36.04292 -34.64960 -33.89539 -31.13658 -30.27429 -28.57222 -28.10598 -26.95026 -25.17707 -24.23810 -23.58841 -21.83588 -21.35061 -19.59223 -19.55698 -19.22317 -18.81202 -18.02052 -17.45689 -17.37422 -16.96433 -16.50313 -16.19334 -15.72900 -15.58258 -15.55151 -15.41131 -15.12259 -15.06438 -14.83780 -14.76963 -14.47626 -14.23686 -14.04594 -13.76796 -13.54232 -13.46787 -13.15496 -13.08949 -12.73462 -12.64336 -12.45590 -12.44277 -12.12463 -11.74671 -11.73321 -11.36873 -11.01140 -10.78820 -10.47279 -10.34923 -9.28280 -8.26451 -6.29952 0.60742 1.29734 1.31274 1.34699 1.44659 1.60121 1.98380 2.33720 2.67179 2.83583 2.95870 2.98002 3.05432 3.12345 3.48124 3.70729 3.95728 4.05971 4.22833 4.31625 4.36832 4.40451 4.50758 4.57282 4.58355 4.62982 4.67786 4.74409 4.92043 4.94809 5.02783 5.12265 5.28212 5.44773 5.62722 5.83193 6.23262 6.34741 6.49692 6.76514 7.32052 7.74931 8.90766 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013998 B = 0.005094 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.868506 B = 5495.022994 C = 6463.899838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.404 6.404 3 C 0.077 3.923 4 C 0.073 3.927 5 N -0.441 5.441 6 C 0.169 3.831 7 C -0.533 4.533 8 H 0.034 0.966 9 C 0.009 3.991 10 N -0.951 5.951 11 Si 0.941 3.059 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.231 1.231 15 C 0.390 3.610 16 N -0.359 5.359 17 N -0.301 5.301 18 C 0.146 3.854 19 C -0.056 4.056 20 C 0.453 3.547 21 F -0.193 7.193 22 F -0.170 7.170 23 F -0.195 7.195 24 N -0.468 5.468 25 C 0.064 3.936 26 H 0.079 0.921 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.037 0.963 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.021 0.979 35 H 0.262 0.738 36 H 0.174 0.826 37 H 0.168 0.832 38 H 0.119 0.881 39 H 0.104 0.896 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.652 12.433 -15.918 20.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C 0.001 3.999 4 C -0.055 4.055 5 N -0.164 5.164 6 C 0.044 3.956 7 C -0.572 4.572 8 H 0.053 0.947 9 C -0.188 4.188 10 N -0.592 5.592 11 Si 0.764 3.236 12 H -0.199 1.199 13 H -0.212 1.212 14 H -0.154 1.154 15 C 0.033 3.967 16 N -0.204 5.204 17 N -0.141 5.141 18 C -0.123 4.123 19 C -0.096 4.096 20 C 0.398 3.602 21 F -0.175 7.175 22 F -0.151 7.151 23 F -0.177 7.177 24 N -0.162 5.162 25 C -0.077 4.077 26 H 0.098 0.902 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.039 0.961 35 H 0.071 0.929 36 H 0.191 0.809 37 H 0.185 0.815 38 H 0.138 0.862 39 H 0.122 0.878 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.234 12.607 -14.906 19.562 hybrid contribution -0.250 -1.833 -0.265 1.869 sum -1.484 10.775 -15.171 18.667 Atomic orbital electron populations 1.22867 0.80505 1.02920 1.00906 1.88157 1.20680 1.28260 1.95243 1.22512 0.90803 0.84945 1.01673 1.22039 0.95312 0.99117 0.88995 1.59485 1.04894 1.17318 1.34753 1.20410 0.99535 0.81092 0.94599 1.21738 1.32689 0.92661 1.10084 0.94739 1.25849 0.96128 0.98997 0.97823 1.70114 1.46475 1.09033 1.33533 0.85821 0.80195 0.78560 0.79053 1.19936 1.21178 1.15353 1.22775 0.92129 0.99299 0.82534 1.74616 0.95841 1.24607 1.25313 1.73795 1.16473 1.18555 1.05318 1.24228 0.85510 1.07921 0.94619 1.21334 0.94324 0.92678 1.01251 1.20708 0.76878 0.89236 0.73368 1.93180 1.64249 1.70980 1.89054 1.93213 1.58236 1.96644 1.67051 1.93234 1.88821 1.92087 1.43531 1.46129 1.07649 1.52909 1.09506 1.22507 1.01123 1.04949 0.79093 0.90244 0.93084 0.92514 0.90790 0.90832 0.94486 0.89142 0.89712 0.96092 0.92928 0.80868 0.81471 0.86232 0.87760 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 11.01 113.37 1.25 1.85 16 2 O -0.40 -14.45 7.73 -148.98 -1.15 -15.60 16 3 C 0.08 2.36 6.23 71.98 0.45 2.80 16 4 C 0.07 2.84 4.83 86.31 0.42 3.25 16 5 N -0.44 -17.78 4.67 -710.37 -3.32 -21.10 16 6 C 0.17 7.81 3.61 85.56 0.31 8.12 16 7 C -0.53 -31.11 8.25 25.60 0.21 -30.90 16 8 H 0.03 2.34 6.53 -2.91 -0.02 2.32 16 9 C 0.01 0.55 5.47 84.66 0.46 1.01 16 10 N -0.95 -62.40 13.96 21.45 0.30 -62.10 16 11 Si 0.94 44.42 27.38 68.60 1.88 46.30 16 12 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 13 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 14 H -0.23 -9.65 6.67 99.48 0.66 -8.99 16 15 C 0.39 16.34 6.01 260.11 1.56 17.90 16 16 N -0.36 -17.09 11.29 -58.00 -0.66 -17.74 16 17 N -0.30 -12.82 12.18 -49.54 -0.60 -13.43 16 18 C 0.15 4.71 6.79 137.64 0.94 5.65 16 19 C -0.06 -1.08 5.57 29.84 0.17 -0.91 16 20 C 0.45 11.34 3.15 71.98 0.23 11.57 16 21 F -0.19 -5.55 15.71 44.97 0.71 -4.84 16 22 F -0.17 -3.54 17.32 44.97 0.78 -2.76 16 23 F -0.20 -6.63 17.03 44.97 0.77 -5.87 16 24 N -0.47 -15.46 3.21 -538.19 -1.73 -17.18 16 25 C 0.06 1.39 10.84 127.77 1.39 2.78 16 26 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.04 1.82 5.97 -2.38 -0.01 1.80 16 32 H 0.09 3.25 7.81 -2.39 -0.02 3.23 16 33 H 0.09 3.85 4.84 -2.39 -0.01 3.84 16 34 H 0.02 0.95 5.84 -2.38 -0.01 0.93 16 35 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 36 H 0.17 1.56 7.98 -2.39 -0.02 1.54 16 37 H 0.17 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.12 1.62 8.14 -2.39 -0.02 1.61 16 39 H 0.10 1.84 6.71 -2.39 -0.02 1.82 16 40 H 0.09 2.14 6.54 -2.39 -0.02 2.12 16 Total: -1.00 -85.37 340.65 5.39 -79.98 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 1.04 Total: 11.22 kcal Atomic # 6 Polarization: 15.74 SS G_CDS: 7.37 Total: 23.11 kcal Atomic # 7 Polarization: -125.55 SS G_CDS: -6.00 Total: -131.55 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -1.15 Total: -15.60 kcal Atomic # 9 Polarization: -15.72 SS G_CDS: 2.25 Total: -13.47 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.30 kcal Total: -85.37 5.39 -79.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592398796.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.323 kcal (2) G-P(sol) polarization free energy of solvation -85.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds