Wall clock time and date at job start Tue Mar 31 2020 13:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86799 * 120.00215 * 2 1 4 4 H 1.48501 * 109.46939 * 274.66549 * 3 2 1 5 5 H 1.48498 * 109.47106 * 34.66248 * 3 2 1 6 6 H 1.48502 * 109.47498 * 154.66474 * 3 2 1 7 7 C 1.39948 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00401 * 162.22933 * 7 2 1 9 9 C 1.41393 * 119.99828 * 342.23089 * 7 2 1 10 10 C 1.40722 * 120.24711 * 155.28757 * 9 7 2 11 11 C 1.37609 * 119.74899 * 180.02562 * 10 9 7 12 12 C 1.38641 * 120.24817 * 0.02673 * 11 10 9 13 13 C 1.50698 * 119.75047 * 179.97438 * 12 11 10 14 14 N 1.46501 * 109.47017 * 89.99688 * 13 12 11 15 15 C 1.34779 * 120.00284 * 179.97438 * 14 13 12 16 16 O 1.21518 * 119.99437 * 0.02562 * 15 14 13 17 17 C 1.48172 * 120.00222 * 180.02562 * 15 14 13 18 18 C 1.39304 * 119.72117 * 180.02562 * 17 15 14 19 19 C 1.38591 * 119.05841 * 179.97438 * 18 17 15 20 20 C 1.38629 * 118.48414 * 0.02562 * 19 18 17 21 21 C 1.50708 * 120.31810 * 180.02562 * 20 19 18 22 22 C 1.52995 * 117.49404 * 188.62255 * 21 20 19 23 23 C 1.52991 * 60.00187 * 252.50900 * 22 21 20 24 24 C 1.38549 * 119.35359 * 0.27412 * 20 19 18 25 25 N 1.31522 * 120.90772 * 359.42729 * 24 20 19 26 26 C 1.38639 * 120.50091 * 0.24976 * 12 11 10 27 27 C 1.37615 * 120.24263 * 359.44406 * 26 12 11 28 28 H 0.96992 * 120.00096 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.12420 * 0.02562 * 10 9 7 30 30 H 1.08003 * 119.88108 * 180.02562 * 11 10 9 31 31 H 1.09000 * 109.47155 * 330.00124 * 13 12 11 32 32 H 1.08998 * 109.47553 * 210.00184 * 13 12 11 33 33 H 0.96999 * 120.00151 * 0.02562 * 14 13 12 34 34 H 1.08002 * 120.47378 * 359.95887 * 18 17 15 35 35 H 1.08005 * 120.75572 * 179.97438 * 19 18 17 36 36 H 1.08994 * 115.56408 * 334.30730 * 21 20 19 37 37 H 1.08999 * 117.50232 * 359.97438 * 22 21 20 38 38 H 1.09008 * 117.50225 * 145.02004 * 22 21 20 39 39 H 1.08998 * 117.50408 * 252.51065 * 23 22 21 40 40 H 1.09008 * 117.49778 * 107.48694 * 23 22 21 41 41 H 1.08008 * 119.54955 * 179.70298 * 24 20 19 42 42 H 1.08000 * 119.87472 * 179.70653 * 26 12 11 43 43 H 1.08004 * 120.12337 * 180.27600 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3911 2.1033 -1.3955 5 1 1.4925 2.6222 0.7963 6 1 3.5856 1.4137 0.5991 7 6 2.0079 -1.2120 0.0005 8 1 3.0493 -1.2345 -0.2849 9 6 1.3516 -2.4071 0.3748 10 6 1.8217 -3.6494 -0.0898 11 6 1.1747 -4.8061 0.2804 12 6 0.0634 -4.7507 1.1074 13 6 -0.6369 -6.0244 1.5053 14 7 -0.0449 -6.5413 2.7417 15 6 -0.5150 -7.6796 3.2894 16 8 -1.4295 -8.2773 2.7574 17 6 0.0834 -8.2021 4.5401 18 6 -0.4066 -9.3794 5.1009 19 6 0.1636 -9.8560 6.2707 20 6 1.2041 -9.1379 6.8394 21 6 1.8546 -9.6188 8.1110 22 6 2.8536 -8.6811 8.7917 23 6 3.3516 -9.9315 8.0642 24 6 1.6366 -7.9711 6.2303 25 7 1.0813 -7.5443 5.1170 26 6 -0.4121 -3.5320 1.5664 27 6 0.2230 -2.3631 1.2141 28 1 -0.4850 0.8400 0.0004 29 1 2.6871 -3.6949 -0.7344 30 1 1.5340 -5.7608 -0.0746 31 1 -0.5250 -6.7636 0.7122 32 1 -1.6957 -5.8219 1.6664 33 1 0.6848 -6.0640 3.1665 34 1 -1.2195 -9.9131 4.6309 35 1 -0.1951 -10.7658 6.7292 36 1 1.2304 -10.2407 8.7526 37 1 3.0407 -7.7166 8.3197 38 1 2.8867 -8.6860 9.8812 39 1 3.7122 -10.7591 8.6749 40 1 3.8659 -9.7894 7.1136 41 1 2.4439 -7.4066 6.6732 42 1 -1.2815 -3.5002 2.2064 43 1 -0.1464 -1.4150 1.5764 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592667900.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:36 Heat of formation + Delta-G solvation = 34.161000 kcal Electronic energy + Delta-G solvation = -24737.337762 eV Core-core repulsion = 21133.326331 eV Total energy + Delta-G solvation = -3604.011431 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.84683 -39.11451 -37.69660 -37.26788 -34.76156 -33.49038 -32.67655 -31.33138 -30.19458 -29.32951 -27.11639 -25.23935 -24.16403 -23.49971 -22.71062 -21.33977 -21.04840 -20.43447 -20.08479 -18.09387 -17.36807 -17.27231 -16.11734 -15.44147 -15.42685 -15.20824 -15.04511 -14.97333 -14.38117 -14.03531 -13.94598 -13.55783 -13.40355 -13.20412 -12.92607 -12.53897 -12.13493 -12.02855 -11.97565 -11.89031 -11.58089 -11.40737 -11.18736 -11.08081 -10.85891 -10.60861 -10.55531 -10.17263 -10.00582 -9.72325 -9.55495 -9.45888 -9.19832 -9.09924 -8.61235 -7.54064 -7.42467 -6.84617 -4.43882 0.46419 1.01422 2.58624 2.73846 3.01066 3.02559 3.03772 3.09951 3.42089 3.53961 3.84205 3.87244 3.98185 4.21758 4.38274 4.49620 4.54007 4.59753 4.64789 4.84163 5.00127 5.15312 5.20884 5.42384 5.52542 5.58639 5.62676 5.67599 5.75409 5.88779 5.92101 5.92453 6.27019 6.29218 6.35836 6.37789 6.81431 6.89283 7.00039 7.20910 7.29088 7.52881 7.54051 7.74349 7.97144 7.98249 8.04399 8.21932 8.44900 8.56431 8.81220 8.89310 10.09610 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015919 B = 0.002343 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.463394 B =11946.221983 C =13146.032450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.458 4.458 8 H 0.079 0.921 9 C 0.117 3.883 10 C -0.229 4.229 11 C -0.069 4.069 12 C -0.245 4.245 13 C 0.182 3.818 14 N -0.694 5.694 15 C 0.560 3.440 16 O -0.547 6.547 17 C 0.079 3.921 18 C -0.110 4.110 19 C -0.079 4.079 20 C -0.088 4.088 21 C -0.120 4.120 22 C -0.174 4.174 23 C -0.167 4.167 24 C 0.097 3.903 25 N -0.449 5.449 26 C -0.080 4.080 27 C -0.169 4.169 28 H 0.282 0.718 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.411 0.589 34 H 0.149 0.851 35 H 0.141 0.859 36 H 0.117 0.883 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.161 0.839 42 H 0.088 0.912 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.280 -15.071 15.572 21.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.114 3.886 10 C -0.249 4.249 11 C -0.087 4.087 12 C -0.247 4.247 13 C 0.060 3.940 14 N -0.343 5.343 15 C 0.344 3.656 16 O -0.425 6.425 17 C -0.059 4.059 18 C -0.130 4.130 19 C -0.105 4.105 20 C -0.090 4.090 21 C -0.138 4.138 22 C -0.211 4.211 23 C -0.204 4.204 24 C -0.063 4.063 25 N -0.160 5.160 26 C -0.099 4.099 27 C -0.189 4.189 28 H 0.093 0.907 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.248 0.752 34 H 0.167 0.833 35 H 0.158 0.842 36 H 0.135 0.865 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.178 0.822 42 H 0.106 0.894 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.687 -14.522 14.700 20.837 hybrid contribution 0.345 0.252 0.568 0.711 sum 3.032 -14.270 15.267 21.117 Atomic orbital electron populations 1.69820 1.07654 1.29429 1.34300 1.25953 0.94743 1.01476 0.92144 0.86301 0.80789 0.80559 0.79131 1.19500 1.19961 1.18344 1.19647 0.98174 0.91279 1.39637 0.90286 1.17670 0.90853 0.92051 0.87977 1.20963 1.03968 0.92846 1.07110 1.20403 0.94856 0.96519 0.96963 1.18954 1.02619 0.92509 1.10574 1.20039 0.96119 0.93551 0.84280 1.46434 1.37444 1.23911 1.26541 1.17952 0.82842 0.81597 0.83206 1.90753 1.29703 1.59277 1.62808 1.21366 0.94416 0.93746 0.96380 1.22129 1.00024 0.95659 0.95229 1.21397 0.94806 0.99512 0.94748 1.20342 0.96537 0.95907 0.96208 1.20968 0.92319 1.04473 0.96076 1.23106 1.02602 0.95279 1.00100 1.23068 0.94569 0.99771 1.02943 1.22700 0.98749 0.93682 0.91167 1.67638 1.07482 1.31640 1.09229 1.20556 0.98047 0.92591 0.98673 1.21300 0.99453 0.96762 1.01346 0.90710 0.88886 0.89376 0.92119 0.92038 0.75246 0.83320 0.84169 0.86501 0.87991 0.88034 0.88141 0.88321 0.82240 0.89381 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.96 10.97 55.55 0.61 -19.35 16 2 C 0.08 1.85 5.14 -17.34 -0.09 1.77 16 3 Si 0.91 18.21 29.59 -169.99 -5.03 13.18 16 4 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 7 C -0.46 -11.88 9.05 -37.74 -0.34 -12.23 16 8 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 9 C 0.12 3.05 5.57 -106.82 -0.60 2.46 16 10 C -0.23 -5.50 9.80 -38.87 -0.38 -5.89 16 11 C -0.07 -1.50 9.67 -39.66 -0.38 -1.88 16 12 C -0.24 -5.21 5.27 -104.33 -0.55 -5.76 16 13 C 0.18 3.41 5.79 -5.19 -0.03 3.38 16 14 N -0.69 -12.09 5.54 -62.32 -0.35 -12.44 16 15 C 0.56 9.60 7.81 -12.18 -0.10 9.51 16 16 O -0.55 -10.57 16.32 5.35 0.09 -10.49 16 17 C 0.08 1.15 6.75 -83.01 -0.56 0.59 16 18 C -0.11 -1.29 9.63 -39.05 -0.38 -1.67 16 19 C -0.08 -0.72 9.88 -39.31 -0.39 -1.11 16 20 C -0.09 -0.79 5.63 -104.36 -0.59 -1.38 16 21 C -0.12 -0.77 6.06 -91.77 -0.56 -1.33 16 22 C -0.17 -0.97 9.87 -26.74 -0.26 -1.24 16 23 C -0.17 -0.94 10.17 -26.74 -0.27 -1.22 16 24 C 0.10 1.04 10.47 -17.57 -0.18 0.85 16 25 N -0.45 -6.18 9.54 -9.80 -0.09 -6.27 16 26 C -0.08 -1.82 9.67 -39.66 -0.38 -2.20 16 27 C -0.17 -4.30 8.70 -38.87 -0.34 -4.63 16 28 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 29 H 0.09 2.11 8.06 -52.48 -0.42 1.69 16 30 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 31 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 32 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 33 H 0.41 7.06 7.79 -40.82 -0.32 6.74 16 34 H 0.15 1.66 7.64 -52.49 -0.40 1.26 16 35 H 0.14 0.86 8.06 -52.48 -0.42 0.43 16 36 H 0.12 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.10 0.57 6.19 -51.93 -0.32 0.25 16 38 H 0.10 0.45 8.14 -51.92 -0.42 0.03 16 39 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.10 0.62 8.14 -51.92 -0.42 0.20 16 41 H 0.16 1.36 6.03 -52.48 -0.32 1.04 16 42 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 43 H 0.12 3.09 6.18 -52.48 -0.32 2.77 16 LS Contribution 369.20 15.07 5.56 5.56 Total: -1.00 -28.96 369.20 -11.04 -39.99 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -5.45 Total: 11.79 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: -6.37 Total: -21.98 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.17 Total: -38.06 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.96 -11.04 -39.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592667900.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.153 kcal (2) G-P(sol) polarization free energy of solvation -28.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds