Wall clock time and date at job start Tue Mar 31 2020 13:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99650 * 2 1 4 4 H 1.48502 * 109.46786 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47266 * 300.00186 * 3 2 1 6 6 H 1.48496 * 109.46937 * 60.00094 * 3 2 1 7 7 C 1.37880 * 120.00261 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99671 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99762 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46785 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47087 * 180.02562 * 10 9 7 12 12 N 1.46507 * 109.47411 * 179.97438 * 11 10 9 13 13 C 1.34772 * 120.00160 * 179.97438 * 12 11 10 14 14 O 1.21586 * 120.00005 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99947 * 179.97438 * 13 12 11 16 16 C 1.46497 * 119.99961 * 179.97438 * 15 13 12 17 17 H 1.08999 * 109.69703 * 325.55843 * 16 15 13 18 18 C 1.53405 * 109.72253 * 86.12722 * 16 15 13 19 19 O 1.42837 * 108.36745 * 184.41038 * 18 16 15 20 20 C 1.35848 * 117.84977 * 310.69935 * 19 18 16 21 21 C 1.39105 * 118.48445 * 197.24150 * 20 19 18 22 22 C 1.38182 * 120.19816 * 180.45890 * 21 20 19 23 23 F 1.35100 * 120.04714 * 179.97438 * 22 21 20 24 24 C 1.38515 * 119.90481 * 359.97438 * 22 21 20 25 25 C 1.38072 * 119.95813 * 359.90870 * 24 22 21 26 26 C 1.38397 * 121.79211 * 17.51559 * 20 19 18 27 27 C 1.50779 * 121.39394 * 359.19168 * 26 20 19 28 28 H 0.96994 * 120.00597 * 359.97438 * 1 2 3 29 29 H 1.08991 * 109.47214 * 60.00488 * 9 7 2 30 30 H 1.09003 * 109.47261 * 299.99645 * 9 7 2 31 31 H 1.09000 * 109.47512 * 59.99778 * 10 9 7 32 32 H 1.09000 * 109.47142 * 300.00084 * 10 9 7 33 33 H 1.09003 * 109.47614 * 59.99710 * 11 10 9 34 34 H 1.09000 * 109.47178 * 300.00037 * 11 10 9 35 35 H 0.97002 * 119.99165 * 359.97438 * 12 11 10 36 36 H 0.97007 * 119.99606 * 0.02562 * 15 13 12 37 37 H 1.09002 * 109.68505 * 304.11753 * 18 16 15 38 38 H 1.08992 * 109.68726 * 64.64221 * 18 16 15 39 39 H 1.08003 * 119.89511 * 0.43349 * 21 20 19 40 40 H 1.08007 * 120.02639 * 179.97438 * 24 22 21 41 41 H 1.07999 * 119.82823 * 179.97438 * 25 24 22 42 42 H 1.08998 * 109.43333 * 138.04762 * 27 26 20 43 43 H 1.09000 * 109.43471 * 257.91629 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4805 -4.9870 -0.0033 12 7 2.4326 -6.1006 -0.0037 13 6 1.9834 -7.3712 -0.0047 14 8 0.7880 -7.5935 -0.0058 15 7 2.8593 -8.3956 -0.0056 16 6 2.3710 -9.7768 -0.0061 17 1 1.4509 -9.8414 0.5746 18 6 2.1060 -10.2317 -1.4470 19 8 1.5353 -11.5405 -1.4081 20 6 2.1540 -12.4802 -0.6468 21 6 1.8503 -13.8194 -0.8691 22 6 2.4518 -14.8040 -0.1088 23 9 2.1542 -16.1036 -0.3269 24 6 3.3603 -14.4566 0.8774 25 6 3.6646 -13.1279 1.0975 26 6 3.0649 -12.1374 0.3372 27 6 3.4307 -10.6988 0.6021 28 1 -0.4851 0.8399 0.0004 29 1 0.6249 -2.5563 -0.8919 30 1 0.6241 -2.5575 0.8880 31 1 2.8715 -3.6047 0.8890 32 1 2.8728 -3.6038 -0.8909 33 1 0.8548 -5.0442 -0.8940 34 1 0.8529 -5.0455 0.8860 35 1 3.3863 -5.9232 -0.0032 36 1 3.8130 -8.2183 -0.0051 37 1 1.4115 -9.5426 -1.9277 38 1 3.0432 -10.2554 -2.0028 39 1 1.1419 -14.0902 -1.6381 40 1 3.8313 -15.2246 1.4731 41 1 4.3729 -12.8594 1.8673 42 1 3.4839 -10.5303 1.6776 43 1 4.4002 -10.4826 0.1533 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596264382.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:13 Heat of formation + Delta-G solvation = -103.997716 kcal Electronic energy + Delta-G solvation = -25548.116063 eV Core-core repulsion = 21507.344396 eV Total energy + Delta-G solvation = -4040.771667 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.31808 -41.30325 -39.84238 -37.79968 -36.18344 -35.18839 -33.43735 -32.77404 -31.20069 -30.95445 -29.52433 -26.62973 -26.20578 -24.09068 -23.39011 -22.78040 -20.97175 -20.76565 -20.46842 -18.75306 -18.26514 -17.62451 -16.74876 -16.47837 -16.29512 -15.98962 -15.84552 -15.52173 -15.27826 -14.99104 -14.69239 -14.47748 -14.27355 -13.99031 -13.96441 -13.85357 -13.50573 -13.24719 -12.33039 -12.26642 -12.15484 -11.86115 -11.81826 -11.68331 -11.34506 -11.14465 -10.94339 -10.76984 -10.59546 -10.23480 -9.90235 -9.48759 -9.45134 -9.22936 -9.14028 -8.77074 -8.63342 -8.39840 -6.04180 -4.07423 0.61547 0.80011 2.42727 2.83551 3.07964 3.18763 3.28076 3.35738 3.38867 3.89974 4.07166 4.09341 4.18525 4.34403 4.42005 4.44073 4.56356 4.68613 4.81181 4.94544 5.00186 5.17360 5.31705 5.37066 5.49724 5.51594 5.58954 5.65872 5.70013 5.76158 5.86683 6.10832 6.15888 6.28592 6.44478 6.57451 6.69463 6.91554 6.95689 6.98122 7.61274 7.73474 7.94511 8.00218 8.35148 8.60344 8.99497 9.56956 11.07073 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.051069 B = 0.001653 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.148496 B =16939.947470 C =17233.299753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.134 3.866 12 N -0.739 5.739 13 C 0.700 3.300 14 O -0.587 6.587 15 N -0.743 5.743 16 C 0.131 3.869 17 H 0.105 0.895 18 C 0.051 3.949 19 O -0.303 6.303 20 C 0.164 3.836 21 C -0.187 4.187 22 C 0.133 3.867 23 F -0.135 7.135 24 C -0.186 4.186 25 C -0.051 4.051 26 C -0.167 4.167 27 C -0.083 4.083 28 H 0.261 0.739 29 H 0.020 0.980 30 H 0.019 0.981 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.395 0.605 36 H 0.398 0.602 37 H 0.118 0.882 38 H 0.069 0.931 39 H 0.144 0.856 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.093 0.907 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.927 -29.170 0.508 31.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.158 4.158 11 C 0.011 3.989 12 N -0.393 5.393 13 C 0.399 3.601 14 O -0.465 6.465 15 N -0.401 5.401 16 C 0.025 3.975 17 H 0.123 0.877 18 C -0.025 4.025 19 O -0.215 6.215 20 C 0.118 3.882 21 C -0.206 4.206 22 C 0.113 3.887 23 F -0.113 7.113 24 C -0.205 4.205 25 C -0.070 4.070 26 C -0.169 4.169 27 C -0.121 4.121 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.228 0.772 36 H 0.232 0.768 37 H 0.136 0.864 38 H 0.087 0.913 39 H 0.162 0.838 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.112 0.888 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.436 -29.282 0.373 30.767 hybrid contribution 1.428 1.017 0.039 1.754 sum 10.864 -28.265 0.412 30.284 Atomic orbital electron populations 1.69971 1.06052 1.26609 1.50557 1.25035 0.94857 0.99319 0.95271 0.86527 0.80015 0.83766 0.77616 1.19784 1.20994 1.21002 1.21236 0.93016 0.90926 1.50916 0.92598 1.19038 0.93865 0.90819 0.97737 1.21892 0.99802 0.93286 1.00848 1.21551 0.91265 0.84068 1.02018 1.45399 1.10593 1.04333 1.78940 1.16027 0.85274 0.80824 0.77934 1.90953 1.13983 1.83983 1.57562 1.44994 1.09153 1.04272 1.81658 1.21296 0.99131 0.80507 0.96602 0.87672 1.23555 1.00387 0.81127 0.97476 1.86089 1.51108 1.20025 1.64299 1.18369 0.91691 0.88341 0.89825 1.20436 1.06036 0.89742 1.04382 1.17258 0.96977 0.77931 0.96515 1.91522 1.92088 1.33723 1.94011 1.21012 1.01440 0.97640 1.00443 1.20729 0.97587 0.90987 0.97655 1.19746 1.01988 0.96067 0.99087 1.20743 0.98815 0.89589 1.02927 0.92957 0.96208 0.96215 0.92740 0.92747 0.91832 0.91840 0.77208 0.76801 0.86407 0.91281 0.83773 0.84432 0.84485 0.88847 0.89520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.44 16 10 C -0.12 -2.26 5.27 -26.73 -0.14 -2.40 16 11 C 0.13 2.27 5.67 -4.04 -0.02 2.24 16 12 N -0.74 -9.70 5.56 -65.22 -0.36 -10.07 16 13 C 0.70 9.57 8.55 -86.92 -0.74 8.82 16 14 O -0.59 -10.73 16.00 5.29 0.08 -10.64 16 15 N -0.74 -6.59 5.10 -58.44 -0.30 -6.89 16 16 C 0.13 1.15 2.69 -67.69 -0.18 0.97 16 17 H 0.11 1.22 7.57 -51.93 -0.39 0.82 16 18 C 0.05 0.46 6.63 37.37 0.25 0.71 16 19 O -0.30 -3.18 10.27 -19.26 -0.20 -3.38 16 20 C 0.16 1.53 6.47 -39.20 -0.25 1.28 16 21 C -0.19 -1.67 9.91 -39.28 -0.39 -2.06 16 22 C 0.13 1.12 7.30 -39.50 -0.29 0.84 16 23 F -0.13 -1.23 17.27 2.25 0.04 -1.19 16 24 C -0.19 -1.27 10.03 -39.54 -0.40 -1.66 16 25 C -0.05 -0.32 9.66 -39.54 -0.38 -0.70 16 26 C -0.17 -1.26 5.75 -104.42 -0.60 -1.86 16 27 C -0.08 -0.50 5.36 -27.81 -0.15 -0.65 16 28 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.39 3.95 8.49 -40.82 -0.35 3.60 16 36 H 0.40 2.23 8.59 -40.82 -0.35 1.88 16 37 H 0.12 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 40 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 41 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 42 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.09 0.36 8.10 -51.93 -0.42 -0.06 16 LS Contribution 367.42 15.07 5.54 5.54 Total: -1.00 -33.42 367.42 -9.46 -42.88 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -6.13 Total: 0.58 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -3.85 Total: -7.22 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.08 Total: -42.76 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.11 Total: -14.02 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.42 -9.46 -42.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596264382.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.120 kcal (2) G-P(sol) polarization free energy of solvation -33.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds