Wall clock time and date at job start Tue Mar 31 2020 13:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99650 * 2 1 4 4 H 1.48502 * 109.46786 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47266 * 300.00186 * 3 2 1 6 6 H 1.48496 * 109.46937 * 60.00094 * 3 2 1 7 7 C 1.37880 * 120.00261 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99671 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99762 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46785 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47087 * 180.02562 * 10 9 7 12 12 N 1.46507 * 109.47411 * 179.97438 * 11 10 9 13 13 C 1.34772 * 120.00160 * 179.97438 * 12 11 10 14 14 O 1.21586 * 120.00005 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99947 * 179.97438 * 13 12 11 16 16 C 1.46497 * 119.99961 * 179.97438 * 15 13 12 17 17 H 1.08999 * 109.69703 * 325.55843 * 16 15 13 18 18 C 1.53405 * 109.72253 * 86.12722 * 16 15 13 19 19 O 1.42837 * 108.36745 * 184.41038 * 18 16 15 20 20 C 1.35848 * 117.84977 * 310.69935 * 19 18 16 21 21 C 1.39105 * 118.48445 * 197.24150 * 20 19 18 22 22 C 1.38182 * 120.19816 * 180.45890 * 21 20 19 23 23 F 1.35100 * 120.04714 * 179.97438 * 22 21 20 24 24 C 1.38515 * 119.90481 * 359.97438 * 22 21 20 25 25 C 1.38072 * 119.95813 * 359.90870 * 24 22 21 26 26 C 1.38397 * 121.79211 * 17.51559 * 20 19 18 27 27 C 1.50779 * 121.39394 * 359.19168 * 26 20 19 28 28 H 0.96994 * 120.00597 * 359.97438 * 1 2 3 29 29 H 1.08991 * 109.47214 * 60.00488 * 9 7 2 30 30 H 1.09003 * 109.47261 * 299.99645 * 9 7 2 31 31 H 1.09000 * 109.47512 * 59.99778 * 10 9 7 32 32 H 1.09000 * 109.47142 * 300.00084 * 10 9 7 33 33 H 1.09003 * 109.47614 * 59.99710 * 11 10 9 34 34 H 1.09000 * 109.47178 * 300.00037 * 11 10 9 35 35 H 0.97002 * 119.99165 * 359.97438 * 12 11 10 36 36 H 0.97007 * 119.99606 * 0.02562 * 15 13 12 37 37 H 1.09002 * 109.68505 * 304.11753 * 18 16 15 38 38 H 1.08992 * 109.68726 * 64.64221 * 18 16 15 39 39 H 1.08003 * 119.89511 * 0.43349 * 21 20 19 40 40 H 1.08007 * 120.02639 * 179.97438 * 24 22 21 41 41 H 1.07999 * 119.82823 * 179.97438 * 25 24 22 42 42 H 1.08998 * 109.43333 * 138.04762 * 27 26 20 43 43 H 1.09000 * 109.43471 * 257.91629 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4805 -4.9870 -0.0033 12 7 2.4326 -6.1006 -0.0037 13 6 1.9834 -7.3712 -0.0047 14 8 0.7880 -7.5935 -0.0058 15 7 2.8593 -8.3956 -0.0056 16 6 2.3710 -9.7768 -0.0061 17 1 1.4509 -9.8414 0.5746 18 6 2.1060 -10.2317 -1.4470 19 8 1.5353 -11.5405 -1.4081 20 6 2.1540 -12.4802 -0.6468 21 6 1.8503 -13.8194 -0.8691 22 6 2.4518 -14.8040 -0.1088 23 9 2.1542 -16.1036 -0.3269 24 6 3.3603 -14.4566 0.8774 25 6 3.6646 -13.1279 1.0975 26 6 3.0649 -12.1374 0.3372 27 6 3.4307 -10.6988 0.6021 28 1 -0.4851 0.8399 0.0004 29 1 0.6249 -2.5563 -0.8919 30 1 0.6241 -2.5575 0.8880 31 1 2.8715 -3.6047 0.8890 32 1 2.8728 -3.6038 -0.8909 33 1 0.8548 -5.0442 -0.8940 34 1 0.8529 -5.0455 0.8860 35 1 3.3863 -5.9232 -0.0032 36 1 3.8130 -8.2183 -0.0051 37 1 1.4115 -9.5426 -1.9277 38 1 3.0432 -10.2554 -2.0028 39 1 1.1419 -14.0902 -1.6381 40 1 3.8313 -15.2246 1.4731 41 1 4.3729 -12.8594 1.8673 42 1 3.4839 -10.5303 1.6776 43 1 4.4002 -10.4826 0.1533 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596264382.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:12 Heat of formation + Delta-G solvation = -126.500392 kcal Electronic energy + Delta-G solvation = -25549.091852 eV Core-core repulsion = 21507.344396 eV Total energy + Delta-G solvation = -4041.747456 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.97319 -42.00085 -40.88011 -38.44593 -37.26368 -36.42917 -35.19135 -33.74098 -32.73370 -31.53339 -30.38796 -28.34392 -26.81793 -25.25162 -24.38021 -23.72420 -22.29293 -21.88584 -21.43393 -19.42659 -19.31092 -18.56985 -18.25386 -17.47254 -17.10215 -16.83522 -16.68626 -16.51121 -16.39760 -16.09646 -15.81996 -15.62290 -15.32091 -15.03288 -14.80916 -14.53452 -14.26169 -14.12986 -13.92123 -13.71370 -13.55249 -12.84467 -12.78077 -12.70901 -12.52769 -12.33499 -12.29376 -12.03708 -11.78835 -11.65734 -11.64919 -11.30400 -11.12726 -10.54844 -10.44654 -9.88921 -9.79111 -9.26362 -8.18295 -6.29639 0.03437 0.22353 1.42887 1.42909 1.51690 1.56359 2.07813 2.12714 2.42917 2.49606 3.15738 3.23085 3.31857 3.46983 3.53509 3.75046 3.82524 4.00038 4.08529 4.18917 4.21565 4.26077 4.39655 4.46272 4.50713 4.58718 4.83717 4.88217 4.98369 4.98838 5.01125 5.03202 5.16267 5.19628 5.30910 5.35634 5.47687 5.55920 5.69113 5.73442 5.86291 5.98324 6.24061 6.28722 6.88348 7.09975 7.40082 7.55365 8.93939 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.051069 B = 0.001653 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.148496 B =16939.947470 C =17233.299753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.967 3.033 4 H -0.257 1.257 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.021 3.979 10 C -0.100 4.100 11 C 0.149 3.851 12 N -0.726 5.726 13 C 0.698 3.302 14 O -0.638 6.638 15 N -0.717 5.717 16 C 0.133 3.867 17 H 0.073 0.927 18 C 0.051 3.949 19 O -0.326 6.326 20 C 0.139 3.861 21 C -0.202 4.202 22 C 0.116 3.884 23 F -0.143 7.143 24 C -0.181 4.181 25 C -0.044 4.044 26 C -0.167 4.167 27 C -0.073 4.073 28 H 0.262 0.738 29 H -0.008 1.008 30 H -0.008 1.008 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.414 0.586 36 H 0.420 0.580 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.138 0.862 40 H 0.160 0.840 41 H 0.173 0.827 42 H 0.111 0.889 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.785 -29.476 1.507 33.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.181 1.181 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.577 4.577 8 H 0.086 0.914 9 C -0.017 4.017 10 C -0.138 4.138 11 C 0.024 3.976 12 N -0.382 5.382 13 C 0.398 3.602 14 O -0.519 6.519 15 N -0.375 5.375 16 C 0.027 3.973 17 H 0.091 0.909 18 C -0.025 4.025 19 O -0.239 6.239 20 C 0.094 3.906 21 C -0.222 4.222 22 C 0.097 3.903 23 F -0.122 7.122 24 C -0.200 4.200 25 C -0.062 4.062 26 C -0.168 4.168 27 C -0.111 4.111 28 H 0.071 0.929 29 H 0.010 0.990 30 H 0.010 0.990 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.251 0.749 36 H 0.258 0.742 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.156 0.844 40 H 0.178 0.822 41 H 0.191 0.809 42 H 0.129 0.871 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 13.384 -29.623 1.372 32.535 hybrid contribution 0.193 1.027 -0.271 1.079 sum 13.577 -28.596 1.101 31.675 Atomic orbital electron populations 1.70119 1.07958 1.27681 1.51823 1.26031 0.95731 1.03576 0.94869 0.85365 0.79258 0.78669 0.77526 1.18073 1.20716 1.20701 1.21725 0.93808 0.91966 1.50205 0.91384 1.18965 0.94538 0.93060 0.95091 1.21580 0.98382 0.91565 1.02247 1.21077 0.91368 0.84659 1.00466 1.44986 1.10979 1.03353 1.78844 1.16166 0.85023 0.81464 0.77541 1.90932 1.16565 1.84718 1.59668 1.44674 1.09619 1.03257 1.79972 1.21255 0.99171 0.80675 0.96233 0.90908 1.23520 1.00672 0.80486 0.97809 1.86043 1.52144 1.20592 1.65079 1.18577 0.93024 0.88061 0.90944 1.20516 1.06527 0.90234 1.04880 1.17472 0.97947 0.77474 0.97456 1.91497 1.92306 1.34206 1.94191 1.21345 1.00332 0.98759 0.99536 1.21106 0.97358 0.90121 0.97567 1.19984 1.01210 0.97305 0.98342 1.20760 0.98766 0.87590 1.03934 0.92881 0.98979 0.98973 0.91200 0.91225 0.93551 0.93571 0.74882 0.74217 0.88703 0.88939 0.84371 0.82199 0.80938 0.87097 0.86417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.76 13.29 21.45 0.28 -56.48 16 2 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 3 Si 0.97 43.22 29.54 68.60 2.03 45.25 16 4 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.54 -29.54 9.11 25.60 0.23 -29.31 16 8 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.02 1.08 4.97 29.85 0.15 1.23 16 10 C -0.10 -3.66 5.27 30.59 0.16 -3.50 16 11 C 0.15 5.05 5.67 86.38 0.49 5.54 16 12 N -0.73 -17.97 5.56 -478.53 -2.66 -20.63 16 13 C 0.70 18.53 8.55 179.05 1.53 20.06 16 14 O -0.64 -23.93 16.00 -3.99 -0.06 -23.99 16 15 N -0.72 -11.16 5.10 -457.07 -2.33 -13.49 16 16 C 0.13 2.17 2.69 45.15 0.12 2.30 16 17 H 0.07 1.71 7.57 -2.39 -0.02 1.69 16 18 C 0.05 0.92 6.63 72.12 0.48 1.40 16 19 O -0.33 -7.08 10.27 -91.84 -0.94 -8.02 16 20 C 0.14 2.57 6.47 22.52 0.15 2.71 16 21 C -0.20 -3.74 9.91 22.46 0.22 -3.51 16 22 C 0.12 1.90 7.30 22.32 0.16 2.06 16 23 F -0.14 -2.61 17.27 44.97 0.78 -1.84 16 24 C -0.18 -2.02 10.03 22.30 0.22 -1.79 16 25 C -0.04 -0.38 9.66 22.30 0.22 -0.17 16 26 C -0.17 -2.11 5.75 -19.73 -0.11 -2.22 16 27 C -0.07 -0.63 5.36 29.89 0.16 -0.47 16 28 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 29 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 30 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 31 H 0.07 2.36 8.14 -2.39 -0.02 2.35 16 32 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.41 7.00 8.49 -92.71 -0.79 6.21 16 36 H 0.42 3.06 8.59 -92.70 -0.80 2.26 16 37 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 40 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 41 H 0.17 0.30 8.06 -2.91 -0.02 0.28 16 42 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.12 0.36 8.10 -2.39 -0.02 0.34 16 Total: -1.00 -76.20 367.42 1.19 -75.00 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -0.54 Total: 9.66 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: 4.64 Total: -5.47 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -4.71 Total: -90.60 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -1.01 Total: -32.01 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.78 Total: -1.84 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -76.20 1.19 -75.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596264382.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.497 kcal (2) G-P(sol) polarization free energy of solvation -76.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds