Wall clock time and date at job start Tue Mar 31 2020 13:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00145 * 2 1 4 4 H 1.48502 * 109.47154 * 239.99784 * 3 2 1 5 5 H 1.48494 * 109.46844 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47311 * 119.99701 * 3 2 1 7 7 C 1.37880 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99942 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99835 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46856 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46780 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.46689 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99699 * 179.97438 * 12 11 10 14 14 O 1.21588 * 120.00098 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99800 * 179.97438 * 13 12 11 16 16 C 1.46501 * 120.00020 * 180.02562 * 15 13 12 17 17 H 1.09007 * 109.69969 * 35.56200 * 16 15 13 18 18 C 1.53407 * 109.70312 * 275.00190 * 16 15 13 19 19 O 1.42814 * 108.38582 * 175.51327 * 18 16 15 20 20 C 1.35854 * 117.87308 * 49.10207 * 19 18 16 21 21 C 1.39113 * 118.46444 * 163.22228 * 20 19 18 22 22 C 1.38184 * 120.19333 * 180.02562 * 21 20 19 23 23 F 1.35101 * 120.05049 * 179.75990 * 22 21 20 24 24 C 1.38522 * 119.90612 * 359.56428 * 22 21 20 25 25 C 1.38068 * 119.95434 * 0.28426 * 24 22 21 26 26 C 1.38392 * 121.81099 * 342.94731 * 20 19 18 27 27 C 1.50782 * 121.38942 * 0.34781 * 26 20 19 28 28 H 0.96996 * 120.00062 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47012 * 60.00179 * 9 7 2 30 30 H 1.09002 * 109.46784 * 300.00197 * 9 7 2 31 31 H 1.09000 * 109.47357 * 59.99541 * 10 9 7 32 32 H 1.09002 * 109.47275 * 299.99517 * 10 9 7 33 33 H 1.09001 * 109.47090 * 59.99799 * 11 10 9 34 34 H 1.08995 * 109.47109 * 299.99561 * 11 10 9 35 35 H 0.96998 * 120.00186 * 359.97438 * 12 11 10 36 36 H 0.97001 * 120.00534 * 359.97438 * 15 13 12 37 37 H 1.09006 * 109.68077 * 55.78637 * 18 16 15 38 38 H 1.09002 * 109.68271 * 295.24119 * 18 16 15 39 39 H 1.07993 * 119.90529 * 359.81724 * 21 20 19 40 40 H 1.07999 * 120.02626 * 180.31582 * 24 22 21 41 41 H 1.07995 * 119.82704 * 179.97438 * 25 24 22 42 42 H 1.08998 * 109.43343 * 222.13788 * 27 26 20 43 43 H 1.09007 * 109.44223 * 102.27033 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0012 12 7 2.4322 -6.1006 0.0018 13 6 1.9830 -7.3713 0.0019 14 8 0.7875 -7.5935 0.0010 15 7 2.8588 -8.3957 0.0020 16 6 2.3704 -9.7769 0.0015 17 1 1.4610 -9.8449 -0.5957 18 6 2.0789 -10.2229 1.4401 19 8 1.5073 -11.5310 1.3991 20 6 2.1356 -12.4755 0.6516 21 6 1.8191 -13.8125 0.8697 22 6 2.4370 -14.8026 0.1300 23 9 2.1309 -16.1004 0.3476 24 6 3.3678 -14.4625 -0.8378 25 6 3.6806 -13.1358 -1.0575 26 6 3.0682 -12.1400 -0.3143 27 6 3.4407 -10.7034 -0.5809 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6240 -2.5566 0.8903 31 1 2.8713 -3.6039 0.8922 32 1 2.8725 -3.6048 -0.8877 33 1 0.8545 -5.0449 -0.8895 34 1 0.8526 -5.0447 0.8905 35 1 3.3859 -5.9234 0.0021 36 1 3.8125 -8.2185 0.0015 37 1 1.3770 -9.5299 1.9041 38 1 3.0062 -10.2452 2.0126 39 1 1.0907 -14.0775 1.6217 40 1 3.8482 -15.2345 -1.4206 41 1 4.4069 -12.8730 -1.8123 42 1 3.5146 -10.5415 -1.6563 43 1 4.4018 -10.4853 -0.1151 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596264384.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:15 Heat of formation + Delta-G solvation = -103.889343 kcal Electronic energy + Delta-G solvation = -25550.521517 eV Core-core repulsion = 21509.754549 eV Total energy + Delta-G solvation = -4040.766968 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.31762 -41.30433 -39.84209 -37.79921 -36.18274 -35.18731 -33.43535 -32.77401 -31.19897 -30.95479 -29.52217 -26.62681 -26.20521 -24.09146 -23.38991 -22.77872 -20.97075 -20.76092 -20.46576 -18.75151 -18.26694 -17.62365 -16.75232 -16.47629 -16.29079 -15.98698 -15.84188 -15.52465 -15.27296 -14.99136 -14.69392 -14.48392 -14.27395 -13.99073 -13.96201 -13.85421 -13.50434 -13.24995 -12.31552 -12.26085 -12.15350 -11.86513 -11.82408 -11.68319 -11.34723 -11.14022 -10.90535 -10.76258 -10.64591 -10.23445 -9.89400 -9.48063 -9.45064 -9.22862 -9.16355 -8.76982 -8.63177 -8.38950 -6.03604 -4.07015 0.61563 0.80129 2.42735 2.83396 3.08123 3.18808 3.30291 3.35417 3.36976 3.89980 4.06993 4.09257 4.18350 4.34422 4.42229 4.44256 4.56418 4.68531 4.81266 4.94543 5.00201 5.17523 5.32039 5.37080 5.49649 5.51667 5.58982 5.65871 5.70060 5.76261 5.86670 6.10853 6.15924 6.28613 6.44523 6.57546 6.69524 6.91705 6.95779 6.98230 7.61019 7.73710 7.94769 8.00238 8.35397 8.60342 8.99383 9.57174 11.07556 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.051128 B = 0.001653 C = 0.001625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.515407 B =16931.632932 C =17231.809084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.134 3.866 12 N -0.739 5.739 13 C 0.700 3.300 14 O -0.587 6.587 15 N -0.743 5.743 16 C 0.132 3.868 17 H 0.105 0.895 18 C 0.051 3.949 19 O -0.303 6.303 20 C 0.164 3.836 21 C -0.187 4.187 22 C 0.133 3.867 23 F -0.135 7.135 24 C -0.187 4.187 25 C -0.051 4.051 26 C -0.168 4.168 27 C -0.083 4.083 28 H 0.262 0.738 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.395 0.605 36 H 0.398 0.602 37 H 0.118 0.882 38 H 0.069 0.931 39 H 0.144 0.856 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.093 0.907 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.901 -29.152 -0.460 31.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.011 3.989 12 N -0.393 5.393 13 C 0.399 3.601 14 O -0.465 6.465 15 N -0.401 5.401 16 C 0.025 3.975 17 H 0.123 0.877 18 C -0.025 4.025 19 O -0.215 6.215 20 C 0.118 3.882 21 C -0.206 4.206 22 C 0.113 3.887 23 F -0.113 7.113 24 C -0.206 4.206 25 C -0.069 4.069 26 C -0.169 4.169 27 C -0.121 4.121 28 H 0.072 0.928 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.228 0.772 36 H 0.232 0.768 37 H 0.136 0.864 38 H 0.087 0.913 39 H 0.162 0.838 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.112 0.888 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.398 -29.259 -0.329 30.733 hybrid contribution 1.454 1.010 -0.038 1.771 sum 10.852 -28.249 -0.367 30.264 Atomic orbital electron populations 1.69952 1.06049 1.26829 1.50349 1.25030 0.94861 0.99292 0.95250 0.86638 0.79557 0.83104 0.78559 1.20268 1.21257 1.20260 1.21160 0.92937 0.90952 1.51200 0.92711 1.19028 0.93851 0.90784 0.97724 1.21894 0.99806 0.93292 1.00841 1.21552 0.91266 0.84065 1.02017 1.45399 1.10591 1.04333 1.78942 1.16028 0.85274 0.80821 0.77940 1.90954 1.13977 1.83988 1.57561 1.44992 1.09156 1.04267 1.81664 1.21295 0.98955 0.80517 0.96740 0.87740 1.23558 1.00399 0.81159 0.97433 1.86083 1.50456 1.19844 1.65133 1.18373 0.91519 0.88299 0.90007 1.20432 1.05785 0.89704 1.04685 1.17261 0.96748 0.77969 0.96690 1.91522 1.91986 1.33902 1.93932 1.21011 1.01184 0.97690 1.00670 1.20725 0.97674 0.90958 0.97586 1.19739 1.01662 0.96061 0.99462 1.20741 0.98708 0.89594 1.03017 0.92846 0.96222 0.96224 0.92738 0.92753 0.91845 0.91823 0.77209 0.76799 0.86380 0.91287 0.83771 0.84433 0.84488 0.88841 0.89511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.26 5.27 -26.73 -0.14 -2.40 16 11 C 0.13 2.27 5.67 -4.04 -0.02 2.24 16 12 N -0.74 -9.71 5.56 -65.22 -0.36 -10.07 16 13 C 0.70 9.57 8.54 -86.92 -0.74 8.83 16 14 O -0.59 -10.72 16.02 5.29 0.08 -10.64 16 15 N -0.74 -6.60 5.11 -58.43 -0.30 -6.90 16 16 C 0.13 1.16 2.67 -67.68 -0.18 0.98 16 17 H 0.10 1.20 7.61 -51.92 -0.40 0.81 16 18 C 0.05 0.47 6.62 37.37 0.25 0.71 16 19 O -0.30 -3.19 10.27 -19.28 -0.20 -3.39 16 20 C 0.16 1.54 6.47 -39.20 -0.25 1.28 16 21 C -0.19 -1.68 9.91 -39.28 -0.39 -2.07 16 22 C 0.13 1.13 7.30 -39.50 -0.29 0.84 16 23 F -0.13 -1.23 17.27 2.25 0.04 -1.19 16 24 C -0.19 -1.27 10.03 -39.54 -0.40 -1.67 16 25 C -0.05 -0.32 9.66 -39.54 -0.38 -0.70 16 26 C -0.17 -1.26 5.75 -104.42 -0.60 -1.86 16 27 C -0.08 -0.50 5.35 -27.81 -0.15 -0.65 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.39 3.95 8.49 -40.82 -0.35 3.60 16 36 H 0.40 2.23 8.59 -40.82 -0.35 1.88 16 37 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 42 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.09 0.36 8.10 -51.93 -0.42 -0.06 16 LS Contribution 367.44 15.07 5.54 5.54 Total: -1.00 -33.35 367.44 -9.46 -42.81 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -6.13 Total: 0.64 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -3.85 Total: -7.22 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.08 Total: -42.76 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.11 Total: -14.02 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.35 -9.46 -42.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596264384.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.078 kcal (2) G-P(sol) polarization free energy of solvation -33.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds