Wall clock time and date at job start Tue Mar 31 2020 13:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00145 * 2 1 4 4 H 1.48502 * 109.47154 * 239.99784 * 3 2 1 5 5 H 1.48494 * 109.46844 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47311 * 119.99701 * 3 2 1 7 7 C 1.37880 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99942 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99835 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46856 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46780 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.46689 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99699 * 179.97438 * 12 11 10 14 14 O 1.21588 * 120.00098 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99800 * 179.97438 * 13 12 11 16 16 C 1.46501 * 120.00020 * 180.02562 * 15 13 12 17 17 H 1.09007 * 109.69969 * 35.56200 * 16 15 13 18 18 C 1.53407 * 109.70312 * 275.00190 * 16 15 13 19 19 O 1.42814 * 108.38582 * 175.51327 * 18 16 15 20 20 C 1.35854 * 117.87308 * 49.10207 * 19 18 16 21 21 C 1.39113 * 118.46444 * 163.22228 * 20 19 18 22 22 C 1.38184 * 120.19333 * 180.02562 * 21 20 19 23 23 F 1.35101 * 120.05049 * 179.75990 * 22 21 20 24 24 C 1.38522 * 119.90612 * 359.56428 * 22 21 20 25 25 C 1.38068 * 119.95434 * 0.28426 * 24 22 21 26 26 C 1.38392 * 121.81099 * 342.94731 * 20 19 18 27 27 C 1.50782 * 121.38942 * 0.34781 * 26 20 19 28 28 H 0.96996 * 120.00062 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47012 * 60.00179 * 9 7 2 30 30 H 1.09002 * 109.46784 * 300.00197 * 9 7 2 31 31 H 1.09000 * 109.47357 * 59.99541 * 10 9 7 32 32 H 1.09002 * 109.47275 * 299.99517 * 10 9 7 33 33 H 1.09001 * 109.47090 * 59.99799 * 11 10 9 34 34 H 1.08995 * 109.47109 * 299.99561 * 11 10 9 35 35 H 0.96998 * 120.00186 * 359.97438 * 12 11 10 36 36 H 0.97001 * 120.00534 * 359.97438 * 15 13 12 37 37 H 1.09006 * 109.68077 * 55.78637 * 18 16 15 38 38 H 1.09002 * 109.68271 * 295.24119 * 18 16 15 39 39 H 1.07993 * 119.90529 * 359.81724 * 21 20 19 40 40 H 1.07999 * 120.02626 * 180.31582 * 24 22 21 41 41 H 1.07995 * 119.82704 * 179.97438 * 25 24 22 42 42 H 1.08998 * 109.43343 * 222.13788 * 27 26 20 43 43 H 1.09007 * 109.44223 * 102.27033 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0012 12 7 2.4322 -6.1006 0.0018 13 6 1.9830 -7.3713 0.0019 14 8 0.7875 -7.5935 0.0010 15 7 2.8588 -8.3957 0.0020 16 6 2.3704 -9.7769 0.0015 17 1 1.4610 -9.8449 -0.5957 18 6 2.0789 -10.2229 1.4401 19 8 1.5073 -11.5310 1.3991 20 6 2.1356 -12.4755 0.6516 21 6 1.8191 -13.8125 0.8697 22 6 2.4370 -14.8026 0.1300 23 9 2.1309 -16.1004 0.3476 24 6 3.3678 -14.4625 -0.8378 25 6 3.6806 -13.1358 -1.0575 26 6 3.0682 -12.1400 -0.3143 27 6 3.4407 -10.7034 -0.5809 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6240 -2.5566 0.8903 31 1 2.8713 -3.6039 0.8922 32 1 2.8725 -3.6048 -0.8877 33 1 0.8545 -5.0449 -0.8895 34 1 0.8526 -5.0447 0.8905 35 1 3.3859 -5.9234 0.0021 36 1 3.8125 -8.2185 0.0015 37 1 1.3770 -9.5299 1.9041 38 1 3.0062 -10.2452 2.0126 39 1 1.0907 -14.0775 1.6217 40 1 3.8482 -15.2345 -1.4206 41 1 4.4069 -12.8730 -1.8123 42 1 3.5146 -10.5415 -1.6563 43 1 4.4018 -10.4853 -0.1151 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596264384.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:15 Heat of formation + Delta-G solvation = -126.350599 kcal Electronic energy + Delta-G solvation = -25551.495510 eV Core-core repulsion = 21509.754549 eV Total energy + Delta-G solvation = -4041.740961 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.97327 -42.00329 -40.88000 -38.44675 -37.26323 -36.42855 -35.18900 -33.74123 -32.73290 -31.53447 -30.38666 -28.34053 -26.81915 -25.24972 -24.38107 -23.72510 -22.29250 -21.88398 -21.42979 -19.42205 -19.31753 -18.56422 -18.25165 -17.47619 -17.10201 -16.83609 -16.68393 -16.51270 -16.39880 -16.09676 -15.82299 -15.62438 -15.31541 -15.03712 -14.80901 -14.53490 -14.24230 -14.12807 -13.92543 -13.72459 -13.54825 -12.83801 -12.74063 -12.68553 -12.53390 -12.38750 -12.30814 -12.04009 -11.78535 -11.65270 -11.63933 -11.31124 -11.14663 -10.53056 -10.44734 -9.88990 -9.79054 -9.26254 -8.17685 -6.29240 0.03431 0.22411 1.42921 1.45944 1.51458 1.54263 2.07682 2.12525 2.43331 2.49694 3.16077 3.23019 3.31806 3.46891 3.53181 3.74993 3.82579 3.99906 4.08468 4.18878 4.21508 4.26089 4.39625 4.46168 4.50663 4.58702 4.83688 4.88166 4.98410 4.98805 5.01091 5.03164 5.16291 5.19622 5.30869 5.35525 5.47551 5.55751 5.69142 5.73534 5.86310 5.98328 6.24220 6.28777 6.88232 7.09968 7.40340 7.55327 8.94077 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.051128 B = 0.001653 C = 0.001625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.515407 B =16931.632932 C =17231.809084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.022 3.978 10 C -0.100 4.100 11 C 0.149 3.851 12 N -0.726 5.726 13 C 0.698 3.302 14 O -0.638 6.638 15 N -0.717 5.717 16 C 0.134 3.866 17 H 0.072 0.928 18 C 0.051 3.949 19 O -0.326 6.326 20 C 0.139 3.861 21 C -0.202 4.202 22 C 0.116 3.884 23 F -0.143 7.143 24 C -0.181 4.181 25 C -0.043 4.043 26 C -0.167 4.167 27 C -0.073 4.073 28 H 0.263 0.737 29 H -0.008 1.008 30 H -0.008 1.008 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.414 0.586 36 H 0.420 0.580 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.138 0.862 40 H 0.160 0.840 41 H 0.173 0.827 42 H 0.111 0.889 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.802 -29.460 -1.447 33.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.016 4.016 10 C -0.138 4.138 11 C 0.024 3.976 12 N -0.382 5.382 13 C 0.398 3.602 14 O -0.519 6.519 15 N -0.375 5.375 16 C 0.027 3.973 17 H 0.091 0.909 18 C -0.025 4.025 19 O -0.239 6.239 20 C 0.094 3.906 21 C -0.222 4.222 22 C 0.097 3.903 23 F -0.122 7.122 24 C -0.200 4.200 25 C -0.061 4.061 26 C -0.169 4.169 27 C -0.110 4.110 28 H 0.071 0.929 29 H 0.010 0.990 30 H 0.010 0.990 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.251 0.749 36 H 0.258 0.742 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.156 0.844 40 H 0.178 0.822 41 H 0.191 0.809 42 H 0.130 0.870 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 13.390 -29.602 -1.317 32.517 hybrid contribution 0.207 1.018 0.269 1.073 sum 13.597 -28.585 -1.048 31.671 Atomic orbital electron populations 1.70108 1.07956 1.27802 1.51649 1.26030 0.95733 1.03566 0.94832 0.85469 0.78167 0.77944 0.79260 1.18999 1.21336 1.19019 1.21667 0.93796 0.91984 1.50487 0.91392 1.18957 0.94526 0.93043 0.95069 1.21582 0.98384 0.91568 1.02240 1.21077 0.91369 0.84659 1.00462 1.44987 1.10977 1.03353 1.78847 1.16167 0.85025 0.81463 0.77547 1.90933 1.16557 1.84722 1.59660 1.44673 1.09624 1.03254 1.79974 1.21256 0.99081 0.80697 0.96270 0.90946 1.23520 1.00616 0.80515 0.97842 1.86036 1.51506 1.20411 1.65915 1.18583 0.92853 0.88005 0.91155 1.20511 1.06263 0.90206 1.05203 1.17476 0.97715 0.77504 0.97643 1.91497 1.92206 1.34383 1.94115 1.21344 1.00085 0.98826 0.99727 1.21104 0.97509 0.90075 0.97434 1.19978 1.00872 0.97318 0.98694 1.20760 0.98578 0.87566 1.04127 0.92881 0.98990 0.99007 0.91217 0.91211 0.93580 0.93544 0.74882 0.74212 0.88739 0.88970 0.84387 0.82194 0.80917 0.87037 0.86412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.75 13.29 21.45 0.28 -56.47 16 2 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 3 Si 0.97 43.17 29.54 68.60 2.03 45.20 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 7 C -0.54 -29.68 9.11 25.60 0.23 -29.44 16 8 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 9 C 0.02 1.11 4.97 29.85 0.15 1.26 16 10 C -0.10 -3.66 5.27 30.59 0.16 -3.50 16 11 C 0.15 5.06 5.67 86.38 0.49 5.55 16 12 N -0.73 -17.98 5.56 -478.53 -2.66 -20.64 16 13 C 0.70 18.53 8.54 179.06 1.53 20.06 16 14 O -0.64 -23.92 16.02 -3.99 -0.06 -23.99 16 15 N -0.72 -11.17 5.11 -457.04 -2.33 -13.51 16 16 C 0.13 2.18 2.67 45.15 0.12 2.30 16 17 H 0.07 1.70 7.61 -2.38 -0.02 1.68 16 18 C 0.05 0.93 6.62 72.12 0.48 1.41 16 19 O -0.33 -7.11 10.27 -91.92 -0.94 -8.06 16 20 C 0.14 2.58 6.47 22.52 0.15 2.72 16 21 C -0.20 -3.75 9.91 22.47 0.22 -3.53 16 22 C 0.12 1.91 7.30 22.32 0.16 2.07 16 23 F -0.14 -2.61 17.27 44.97 0.78 -1.84 16 24 C -0.18 -2.02 10.03 22.30 0.22 -1.79 16 25 C -0.04 -0.38 9.66 22.30 0.22 -0.16 16 26 C -0.17 -2.11 5.75 -19.73 -0.11 -2.22 16 27 C -0.07 -0.62 5.35 29.90 0.16 -0.46 16 28 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 29 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 30 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 31 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.41 7.00 8.49 -92.71 -0.79 6.22 16 36 H 0.42 3.06 8.59 -92.71 -0.80 2.26 16 37 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 38 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 40 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 41 H 0.17 0.29 8.06 -2.91 -0.02 0.26 16 42 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.12 0.36 8.10 -2.38 -0.02 0.34 16 Total: -1.00 -76.14 367.44 1.18 -74.95 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -0.54 Total: 9.86 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: 4.64 Total: -5.51 kcal Atomic # 7 Polarization: -85.91 SS G_CDS: -4.71 Total: -90.62 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -1.01 Total: -32.04 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.78 Total: -1.84 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -76.14 1.18 -74.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596264384.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.396 kcal (2) G-P(sol) polarization free energy of solvation -76.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds