Wall clock time and date at job start Tue Mar 31 2020 13:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35981 * 116.99807 * 2 1 4 4 C 1.38703 * 119.99958 * 179.97438 * 3 2 1 5 5 C 1.38126 * 120.00143 * 180.02562 * 4 3 2 6 6 C 1.38701 * 119.99811 * 0.02562 * 5 4 3 7 7 O 1.35986 * 119.99935 * 179.97438 * 6 5 4 8 8 C 1.42898 * 117.00063 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.46794 * 179.97438 * 8 7 6 10 10 C 1.53007 * 109.46878 * 180.02562 * 9 8 7 11 11 S 1.81398 * 109.47229 * 179.97438 * 10 9 8 12 12 C 1.81400 * 103.00199 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47238 * 180.02562 * 12 11 10 14 14 C 1.50694 * 115.55426 * 65.33199 * 13 12 11 15 15 H 1.08000 * 119.99922 * 265.65674 * 14 13 12 16 16 C 1.37878 * 120.00042 * 85.65578 * 14 13 12 17 17 N 1.31511 * 119.99884 * 353.69219 * 16 14 13 18 18 Si 1.86802 * 119.99846 * 173.69754 * 16 14 13 19 19 H 1.48501 * 109.47070 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47126 * 120.00060 * 18 16 14 21 21 H 1.48498 * 109.46805 * 240.00140 * 18 16 14 22 22 C 1.53002 * 117.49288 * 279.65878 * 13 12 11 23 23 C 1.53001 * 117.49723 * 211.00546 * 13 12 11 24 24 C 1.38694 * 120.00215 * 0.25803 * 6 5 4 25 25 C 1.38135 * 119.99854 * 359.48631 * 24 6 5 26 26 H 1.08994 * 109.47430 * 300.00091 * 1 2 3 27 27 H 1.09001 * 109.46802 * 59.99910 * 1 2 3 28 28 H 1.09004 * 109.46986 * 179.97438 * 1 2 3 29 29 H 1.07994 * 119.99491 * 0.02562 * 4 3 2 30 30 H 1.07994 * 119.99950 * 179.97438 * 5 4 3 31 31 H 1.09001 * 109.47502 * 300.00112 * 8 7 6 32 32 H 1.09004 * 109.46982 * 60.00017 * 8 7 6 33 33 H 1.09002 * 109.47475 * 299.99579 * 9 8 7 34 34 H 1.08996 * 109.47283 * 60.00491 * 9 8 7 35 35 H 1.09001 * 109.47440 * 300.00134 * 10 9 8 36 36 H 1.09004 * 109.46960 * 59.99988 * 10 9 8 37 37 H 1.09004 * 109.46702 * 300.00374 * 12 11 10 38 38 H 1.09002 * 109.47005 * 59.99845 * 12 11 10 39 39 H 0.97001 * 119.99852 * 174.97411 * 17 16 14 40 40 H 1.08998 * 117.50339 * 0.02562 * 22 13 12 41 41 H 1.09005 * 117.49292 * 145.02159 * 22 13 12 42 42 H 1.08997 * 117.49716 * 214.97870 * 23 13 12 43 43 H 1.09001 * 117.49700 * 359.97190 * 23 13 12 44 44 H 1.08006 * 120.00332 * 179.72817 * 24 6 5 45 45 H 1.08002 * 120.00119 * 180.23581 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4315 1.2842 0.0005 5 6 4.0586 2.5150 0.0011 6 6 3.3031 3.6782 0.0016 7 8 3.9204 4.8898 0.0027 8 6 3.0805 6.0459 0.0037 9 6 3.9478 7.3063 0.0055 10 6 3.0484 8.5442 0.0073 11 16 4.0766 10.0386 0.0101 12 6 2.8518 11.3767 0.0127 13 6 3.5714 12.7269 0.0146 14 6 4.3774 13.0356 -1.2206 15 1 5.4331 12.8094 -1.2471 16 6 3.7671 13.6070 -2.3170 17 7 2.4621 13.7686 -2.3333 18 14 4.7940 14.1514 -3.7795 19 1 6.2261 13.8618 -3.5139 20 1 4.3564 13.4157 -4.9929 21 1 4.6159 15.6100 -3.9937 22 6 4.1051 13.2409 1.3533 23 6 2.8774 13.8963 0.7159 24 6 1.9181 3.6056 0.0070 25 6 1.2909 2.3748 0.0011 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 4.0196 0.3785 0.0005 30 1 5.1370 2.5715 0.0019 31 1 2.4511 6.0387 -0.8862 32 1 2.4512 6.0370 0.8938 33 1 4.5767 7.3134 0.8957 34 1 4.5772 7.3155 -0.8843 35 1 2.4191 8.5374 -0.8827 36 1 2.4192 8.5348 0.8973 37 1 2.2273 11.2994 -0.8774 38 1 2.2275 11.2960 0.9026 39 1 2.0404 14.2358 -3.0714 40 1 3.9439 12.6170 2.2324 41 1 5.0391 13.8027 1.3403 42 1 3.0041 14.8889 0.2839 43 1 1.9079 13.7038 1.1755 44 1 1.3298 4.5114 0.0119 45 1 0.2124 2.3183 0.0015 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596325829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:36 Heat of formation + Delta-G solvation = -36.831765 kcal Electronic energy + Delta-G solvation = -23070.599223 eV Core-core repulsion = 19566.660515 eV Total energy + Delta-G solvation = -3503.938708 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.139 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.66737 -39.27162 -36.74776 -36.57479 -33.87172 -31.93944 -31.48489 -29.67793 -27.77855 -27.46662 -26.57118 -25.29936 -23.23146 -22.14980 -21.40501 -21.12536 -19.19073 -18.71043 -17.91610 -16.79569 -16.47321 -16.20578 -16.02112 -15.33429 -15.07036 -14.66254 -14.63131 -14.46595 -13.99805 -13.80550 -13.65825 -13.28151 -13.19752 -12.91862 -12.75806 -12.25434 -12.17467 -12.08604 -11.78971 -11.63635 -11.19073 -11.04580 -10.99820 -10.90938 -10.85062 -10.52201 -10.46455 -10.17821 -9.64722 -9.38533 -9.29987 -8.82280 -8.44948 -8.02753 -8.00263 -6.83628 -6.05367 -4.10214 0.94826 1.19076 2.24676 2.93735 3.13901 3.29285 3.37978 3.43388 3.44491 3.47948 4.40504 4.42114 4.48164 4.70680 4.76531 4.77157 4.83550 4.91711 5.04000 5.07546 5.14530 5.17333 5.23882 5.26847 5.32534 5.38196 5.56771 5.68471 5.75651 5.95273 5.97540 5.99994 6.03350 6.16544 6.19716 6.28787 6.38345 6.51655 6.72382 6.79607 6.99261 7.05198 7.25794 7.38991 7.47609 7.88570 8.39260 8.92214 9.56023 11.03858 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.022148 B = 0.001854 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.900051 B =15095.722049 C =15349.476349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.084 3.916 4 C -0.111 4.111 5 C -0.114 4.114 6 C 0.101 3.899 7 O -0.312 6.312 8 C 0.065 3.935 9 C -0.098 4.098 10 C -0.100 4.100 11 S -0.240 6.240 12 C -0.026 4.026 13 C 0.053 3.947 14 C -0.482 4.482 15 H 0.063 0.937 16 C 0.070 3.930 17 N -0.882 5.882 18 Si 0.889 3.111 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.285 1.285 22 C -0.204 4.204 23 C -0.148 4.148 24 C -0.170 4.170 25 C -0.167 4.167 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.099 0.901 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.047 0.953 39 H 0.259 0.741 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.062 0.938 44 H 0.132 0.868 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.735 -23.748 5.646 24.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.040 3.960 4 C -0.130 4.130 5 C -0.132 4.132 6 C 0.056 3.944 7 O -0.226 6.226 8 C -0.012 4.012 9 C -0.136 4.136 10 C -0.249 4.249 11 S -0.011 6.011 12 C -0.174 4.174 13 C 0.051 3.949 14 C -0.520 4.520 15 H 0.081 0.919 16 C -0.132 4.132 17 N -0.520 5.520 18 Si 0.716 3.284 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.242 4.242 23 C -0.188 4.188 24 C -0.189 4.189 25 C -0.186 4.186 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.117 0.883 29 H 0.155 0.845 30 H 0.157 0.843 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.081 0.919 44 H 0.150 0.850 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.508 -23.815 5.489 24.690 hybrid contribution -1.661 0.593 -0.857 1.961 sum -5.169 -23.223 4.632 24.238 Atomic orbital electron populations 1.23032 0.78571 1.03855 1.01288 1.86067 1.21186 1.26741 1.89391 1.18904 0.92337 0.84189 1.00597 1.20228 0.91311 0.97867 1.03575 1.20279 1.00406 0.88982 1.03559 1.18937 0.90950 0.85778 0.98770 1.86085 1.35956 1.11886 1.88701 1.22862 0.93462 0.83482 1.01379 1.21175 0.97967 0.89523 1.04970 1.23168 1.00906 0.96585 1.04244 1.86921 1.17505 0.98798 1.97910 1.23093 0.96775 0.95232 1.02281 1.18471 0.97384 0.87898 0.91121 1.20430 0.94639 1.40765 0.96125 0.91871 1.24956 0.94727 0.95674 0.97878 1.70019 1.08429 1.41199 1.32325 0.86584 0.80902 0.78171 0.82720 1.19556 1.21041 1.21085 1.23019 0.98081 1.05591 0.97482 1.22576 0.93494 0.99080 1.03689 1.21110 0.93515 0.98512 1.05795 1.21036 1.00011 0.91694 1.05853 0.92754 0.92741 0.88301 0.84515 0.84304 0.91883 0.92012 0.90020 0.89782 0.90467 0.90925 0.89842 0.93470 0.93158 0.91418 0.90246 0.89779 0.91913 0.85038 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.92 10.50 -19.68 -0.21 -3.13 16 3 C 0.08 0.83 6.69 -39.24 -0.26 0.56 16 4 C -0.11 -1.05 9.98 -39.45 -0.39 -1.44 16 5 C -0.11 -1.14 9.98 -39.45 -0.39 -1.53 16 6 C 0.10 1.13 6.69 -39.24 -0.26 0.87 16 7 O -0.31 -3.81 10.14 -19.70 -0.20 -4.01 16 8 C 0.06 0.70 4.74 37.16 0.18 0.88 16 9 C -0.10 -1.24 5.59 -26.73 -0.15 -1.38 16 10 C -0.10 -1.45 5.94 37.16 0.22 -1.23 16 11 S -0.24 -4.70 21.43 -107.50 -2.30 -7.00 16 12 C -0.03 -0.56 5.80 37.16 0.22 -0.34 16 13 C 0.05 1.28 1.34 -155.66 -0.21 1.07 16 14 C -0.48 -12.99 8.49 -34.44 -0.29 -13.28 16 15 H 0.06 1.75 7.82 -52.49 -0.41 1.34 16 16 C 0.07 1.90 5.39 -17.82 -0.10 1.81 16 17 N -0.88 -24.53 12.90 55.43 0.71 -23.81 16 18 Si 0.89 21.14 29.55 -169.99 -5.02 16.12 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 C -0.20 -4.44 9.96 -26.69 -0.27 -4.71 16 23 C -0.15 -3.41 9.40 -26.70 -0.25 -3.66 16 24 C -0.17 -1.70 9.03 -39.45 -0.36 -2.06 16 25 C -0.17 -1.53 9.03 -39.45 -0.36 -1.89 16 26 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 27 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 28 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.06 0.63 7.67 -51.93 -0.40 0.23 16 32 H 0.06 0.59 7.65 -51.93 -0.40 0.19 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.08 1.10 8.14 -51.92 -0.42 0.67 16 36 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 37 H 0.08 1.99 8.14 -51.92 -0.42 1.57 16 38 H 0.05 0.94 8.09 -51.92 -0.42 0.52 16 39 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 42 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 43 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.13 1.13 6.29 -52.48 -0.33 0.80 16 45 H 0.13 0.90 6.29 -52.49 -0.33 0.57 16 LS Contribution 388.68 15.07 5.86 5.86 Total: -1.00 -29.67 388.68 -10.14 -39.81 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -7.29 Total: 1.37 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: -1.68 Total: -25.19 kcal Atomic # 7 Polarization: -24.53 SS G_CDS: 0.71 Total: -23.81 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.41 Total: -7.14 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -4.70 SS G_CDS: -2.30 Total: -7.00 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.67 -10.14 -39.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596325829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.973 kcal (2) G-P(sol) polarization free energy of solvation -29.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds