Wall clock time and date at job start Tue Mar 31 2020 13:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35981 * 116.99807 * 2 1 4 4 C 1.38703 * 119.99958 * 179.97438 * 3 2 1 5 5 C 1.38126 * 120.00143 * 180.02562 * 4 3 2 6 6 C 1.38701 * 119.99811 * 0.02562 * 5 4 3 7 7 O 1.35986 * 119.99935 * 179.97438 * 6 5 4 8 8 C 1.42898 * 117.00063 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.46794 * 179.97438 * 8 7 6 10 10 C 1.53007 * 109.46878 * 180.02562 * 9 8 7 11 11 S 1.81398 * 109.47229 * 179.97438 * 10 9 8 12 12 C 1.81400 * 103.00199 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47238 * 180.02562 * 12 11 10 14 14 C 1.50694 * 115.55426 * 65.33199 * 13 12 11 15 15 H 1.08000 * 119.99922 * 265.65674 * 14 13 12 16 16 C 1.37878 * 120.00042 * 85.65578 * 14 13 12 17 17 N 1.31511 * 119.99884 * 353.69219 * 16 14 13 18 18 Si 1.86802 * 119.99846 * 173.69754 * 16 14 13 19 19 H 1.48501 * 109.47070 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47126 * 120.00060 * 18 16 14 21 21 H 1.48498 * 109.46805 * 240.00140 * 18 16 14 22 22 C 1.53002 * 117.49288 * 279.65878 * 13 12 11 23 23 C 1.53001 * 117.49723 * 211.00546 * 13 12 11 24 24 C 1.38694 * 120.00215 * 0.25803 * 6 5 4 25 25 C 1.38135 * 119.99854 * 359.48631 * 24 6 5 26 26 H 1.08994 * 109.47430 * 300.00091 * 1 2 3 27 27 H 1.09001 * 109.46802 * 59.99910 * 1 2 3 28 28 H 1.09004 * 109.46986 * 179.97438 * 1 2 3 29 29 H 1.07994 * 119.99491 * 0.02562 * 4 3 2 30 30 H 1.07994 * 119.99950 * 179.97438 * 5 4 3 31 31 H 1.09001 * 109.47502 * 300.00112 * 8 7 6 32 32 H 1.09004 * 109.46982 * 60.00017 * 8 7 6 33 33 H 1.09002 * 109.47475 * 299.99579 * 9 8 7 34 34 H 1.08996 * 109.47283 * 60.00491 * 9 8 7 35 35 H 1.09001 * 109.47440 * 300.00134 * 10 9 8 36 36 H 1.09004 * 109.46960 * 59.99988 * 10 9 8 37 37 H 1.09004 * 109.46702 * 300.00374 * 12 11 10 38 38 H 1.09002 * 109.47005 * 59.99845 * 12 11 10 39 39 H 0.97001 * 119.99852 * 174.97411 * 17 16 14 40 40 H 1.08998 * 117.50339 * 0.02562 * 22 13 12 41 41 H 1.09005 * 117.49292 * 145.02159 * 22 13 12 42 42 H 1.08997 * 117.49716 * 214.97870 * 23 13 12 43 43 H 1.09001 * 117.49700 * 359.97190 * 23 13 12 44 44 H 1.08006 * 120.00332 * 179.72817 * 24 6 5 45 45 H 1.08002 * 120.00119 * 180.23581 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4315 1.2842 0.0005 5 6 4.0586 2.5150 0.0011 6 6 3.3031 3.6782 0.0016 7 8 3.9204 4.8898 0.0027 8 6 3.0805 6.0459 0.0037 9 6 3.9478 7.3063 0.0055 10 6 3.0484 8.5442 0.0073 11 16 4.0766 10.0386 0.0101 12 6 2.8518 11.3767 0.0127 13 6 3.5714 12.7269 0.0146 14 6 4.3774 13.0356 -1.2206 15 1 5.4331 12.8094 -1.2471 16 6 3.7671 13.6070 -2.3170 17 7 2.4621 13.7686 -2.3333 18 14 4.7940 14.1514 -3.7795 19 1 6.2261 13.8618 -3.5139 20 1 4.3564 13.4157 -4.9929 21 1 4.6159 15.6100 -3.9937 22 6 4.1051 13.2409 1.3533 23 6 2.8774 13.8963 0.7159 24 6 1.9181 3.6056 0.0070 25 6 1.2909 2.3748 0.0011 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 4.0196 0.3785 0.0005 30 1 5.1370 2.5715 0.0019 31 1 2.4511 6.0387 -0.8862 32 1 2.4512 6.0370 0.8938 33 1 4.5767 7.3134 0.8957 34 1 4.5772 7.3155 -0.8843 35 1 2.4191 8.5374 -0.8827 36 1 2.4192 8.5348 0.8973 37 1 2.2273 11.2994 -0.8774 38 1 2.2275 11.2960 0.9026 39 1 2.0404 14.2358 -3.0714 40 1 3.9439 12.6170 2.2324 41 1 5.0391 13.8027 1.3403 42 1 3.0041 14.8889 0.2839 43 1 1.9079 13.7038 1.1755 44 1 1.3298 4.5114 0.0119 45 1 0.2124 2.3183 0.0015 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596325829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:35 Heat of formation + Delta-G solvation = -50.450160 kcal Electronic energy + Delta-G solvation = -23071.189761 eV Core-core repulsion = 19566.660515 eV Total energy + Delta-G solvation = -3504.529246 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.139 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.38027 -39.99807 -38.41098 -37.47079 -34.88594 -33.98867 -32.17878 -30.38333 -29.46576 -28.05853 -27.62054 -27.21097 -24.04769 -22.92301 -22.87704 -22.33328 -21.04513 -19.43269 -18.66180 -18.11336 -17.53097 -17.34909 -16.74851 -16.60682 -16.58166 -15.79753 -15.75218 -15.53367 -15.40572 -14.99887 -14.74546 -14.42826 -14.24728 -13.91642 -13.76084 -13.53144 -13.45210 -13.02237 -12.99781 -12.83133 -12.72120 -12.67531 -12.39441 -12.27463 -11.97686 -11.92369 -11.62405 -11.49179 -11.28971 -10.88685 -10.67866 -10.44698 -10.08953 -9.84232 -8.73833 -8.39949 -8.11028 -6.20330 0.24563 0.44943 0.85086 1.39016 1.42881 1.53311 1.95587 2.22617 2.43989 2.44385 2.72250 3.17891 3.54812 3.72936 3.82651 3.82909 4.00139 4.03365 4.16049 4.21508 4.28147 4.31165 4.37262 4.40555 4.43298 4.50605 4.53290 4.58025 4.61798 4.70145 4.74942 4.89197 4.95322 4.97130 5.01180 5.04022 5.13272 5.23900 5.28044 5.33033 5.58059 5.60167 5.63488 5.78817 6.32518 6.39755 6.52136 6.83956 7.47443 8.97365 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.022148 B = 0.001854 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.900051 B =15095.722049 C =15349.476349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.076 3.924 4 C -0.119 4.119 5 C -0.121 4.121 6 C 0.078 3.922 7 O -0.329 6.329 8 C 0.070 3.930 9 C -0.091 4.091 10 C -0.082 4.082 11 S -0.280 6.280 12 C -0.014 4.014 13 C 0.023 3.977 14 C -0.492 4.492 15 H 0.046 0.954 16 C 0.028 3.972 17 N -0.906 5.906 18 Si 0.943 3.057 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.280 1.280 22 C -0.182 4.182 23 C -0.150 4.150 24 C -0.175 4.175 25 C -0.170 4.170 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.118 0.882 29 H 0.151 0.849 30 H 0.147 0.853 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.259 0.741 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.078 0.922 44 H 0.145 0.855 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.608 -25.266 6.223 26.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.032 3.968 4 C -0.137 4.137 5 C -0.140 4.140 6 C 0.033 3.967 7 O -0.244 6.244 8 C -0.007 4.007 9 C -0.129 4.129 10 C -0.230 4.230 11 S -0.052 6.052 12 C -0.162 4.162 13 C 0.022 3.978 14 C -0.530 4.530 15 H 0.064 0.936 16 C -0.172 4.172 17 N -0.544 5.544 18 Si 0.769 3.231 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.205 1.205 22 C -0.220 4.220 23 C -0.190 4.190 24 C -0.194 4.194 25 C -0.189 4.189 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.136 0.864 29 H 0.169 0.831 30 H 0.165 0.835 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.112 0.888 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.110 0.890 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.097 0.903 44 H 0.163 0.837 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.380 -25.329 6.070 26.412 hybrid contribution -1.408 0.928 -1.013 1.967 sum -5.787 -24.401 5.057 25.583 Atomic orbital electron populations 1.23311 0.76743 1.05495 1.02058 1.86051 1.23160 1.26501 1.89263 1.19121 0.92688 0.84762 1.00275 1.20453 0.91713 0.98208 1.03339 1.20466 1.00983 0.89039 1.03496 1.19162 0.91732 0.85550 1.00221 1.86032 1.36727 1.12464 1.89196 1.22786 0.92913 0.82309 1.02689 1.21051 0.97805 0.89770 1.04299 1.23170 1.00315 0.94009 1.05509 1.86947 1.19095 1.01118 1.97998 1.22780 0.96663 0.95066 1.01732 1.18603 0.98465 0.89418 0.91331 1.20582 0.94168 1.40662 0.97594 0.93565 1.25561 0.95665 0.96002 1.00007 1.70095 1.09366 1.41910 1.33034 0.85741 0.79469 0.77893 0.80000 1.19615 1.20867 1.20547 1.22997 0.97261 1.04653 0.97064 1.22505 0.94839 0.97728 1.03948 1.21307 0.93186 0.99413 1.05462 1.21289 1.01172 0.91197 1.05209 0.91878 0.91994 0.86387 0.83128 0.83539 0.90941 0.90305 0.90217 0.91029 0.90050 0.88765 0.92622 0.91574 0.93175 0.88997 0.90595 0.91973 0.90316 0.83739 0.83151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -5.60 10.50 -93.34 -0.98 -6.58 16 3 C 0.08 1.39 6.69 22.49 0.15 1.54 16 4 C -0.12 -2.12 9.98 22.35 0.22 -1.90 16 5 C -0.12 -2.35 9.98 22.35 0.22 -2.12 16 6 C 0.08 1.67 6.69 22.49 0.15 1.82 16 7 O -0.33 -7.68 10.14 -93.39 -0.95 -8.63 16 8 C 0.07 1.37 4.74 71.98 0.34 1.71 16 9 C -0.09 -2.16 5.59 30.60 0.17 -1.99 16 10 C -0.08 -2.21 5.94 71.98 0.43 -1.78 16 11 S -0.28 -10.79 21.43 -56.49 -1.21 -12.00 16 12 C -0.01 -0.61 5.80 71.98 0.42 -0.19 16 13 C 0.02 1.12 1.34 -52.93 -0.07 1.05 16 14 C -0.49 -26.84 8.49 25.60 0.22 -26.62 16 15 H 0.05 2.61 7.82 -2.91 -0.02 2.59 16 16 C 0.03 1.51 5.39 84.66 0.46 1.97 16 17 N -0.91 -50.83 12.90 21.45 0.28 -50.55 16 18 Si 0.94 43.79 29.55 68.60 2.03 45.82 16 19 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 C -0.18 -7.73 9.96 30.62 0.30 -7.42 16 23 C -0.15 -6.86 9.40 30.62 0.29 -6.57 16 24 C -0.18 -3.19 9.03 22.35 0.20 -2.99 16 25 C -0.17 -2.80 9.03 22.36 0.20 -2.60 16 26 H 0.06 0.44 7.66 -2.39 -0.02 0.42 16 27 H 0.06 0.45 7.66 -2.39 -0.02 0.43 16 28 H 0.12 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 30 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 31 H 0.07 1.29 7.67 -2.39 -0.02 1.27 16 32 H 0.08 1.29 7.65 -2.38 -0.02 1.27 16 33 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 38 H 0.07 2.54 8.09 -2.39 -0.02 2.52 16 39 H 0.26 13.91 8.32 -92.71 -0.77 13.14 16 40 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 41 H 0.08 3.24 8.14 -2.38 -0.02 3.22 16 42 H 0.06 3.07 8.14 -2.39 -0.02 3.05 16 43 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 44 H 0.14 2.14 6.29 -2.91 -0.02 2.12 16 45 H 0.15 1.71 6.29 -2.91 -0.02 1.69 16 Total: -1.00 -63.56 388.68 4.94 -58.62 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 0.96 Total: 18.14 kcal Atomic # 6 Polarization: -49.63 SS G_CDS: 4.82 Total: -44.82 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: 0.28 Total: -50.55 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -1.93 Total: -15.21 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: -10.79 SS G_CDS: -1.21 Total: -12.00 kcal Total: -63.56 4.94 -58.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596325829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.175 kcal (2) G-P(sol) polarization free energy of solvation -63.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds