Wall clock time and date at job start Tue Mar 31 2020 13:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35895 * 116.99966 * 2 1 4 4 C 1.38736 * 120.05636 * 180.02562 * 3 2 1 5 5 C 1.38142 * 119.94338 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.05788 * 0.02600 * 5 4 3 7 7 C 1.50701 * 119.94508 * 179.97438 * 6 5 4 8 8 O 1.42898 * 109.47066 * 89.99832 * 7 6 5 9 9 C 1.42896 * 113.99931 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47335 * 179.97438 * 9 8 7 11 11 S 1.81406 * 109.47291 * 179.97438 * 10 9 8 12 12 C 1.81397 * 103.00166 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47174 * 181.60710 * 12 11 10 14 14 C 1.50696 * 115.54860 * 305.21944 * 13 12 11 15 15 H 1.08002 * 120.00225 * 278.21059 * 14 13 12 16 16 C 1.37878 * 119.99672 * 97.94116 * 14 13 12 17 17 N 1.31521 * 120.00146 * 181.34555 * 16 14 13 18 18 Si 1.86796 * 120.00156 * 1.34746 * 16 14 13 19 19 H 1.48498 * 109.47513 * 92.60368 * 18 16 14 20 20 H 1.48507 * 109.47183 * 212.60603 * 18 16 14 21 21 H 1.48503 * 109.47191 * 332.60206 * 18 16 14 22 22 C 1.52998 * 117.51546 * 90.92566 * 13 12 11 23 23 C 1.52995 * 60.00079 * 107.48178 * 22 13 12 24 24 C 1.38269 * 120.10877 * 0.24607 * 6 5 4 25 25 C 1.38149 * 120.05682 * 359.45581 * 24 6 5 26 26 H 1.09003 * 109.46965 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47413 * 299.99702 * 1 2 3 28 28 H 1.09001 * 109.47648 * 60.00264 * 1 2 3 29 29 H 1.07995 * 120.02620 * 0.02562 * 4 3 2 30 30 H 1.08001 * 119.97216 * 180.02562 * 5 4 3 31 31 H 1.09000 * 109.47234 * 329.99641 * 7 6 5 32 32 H 1.08998 * 109.47108 * 209.99601 * 7 6 5 33 33 H 1.09003 * 109.47676 * 59.99791 * 9 8 7 34 34 H 1.09008 * 109.47333 * 300.00048 * 9 8 7 35 35 H 1.09004 * 109.46952 * 59.99925 * 10 9 8 36 36 H 1.08995 * 109.47126 * 300.00085 * 10 9 8 37 37 H 1.09005 * 109.46660 * 61.60654 * 12 11 10 38 38 H 1.09009 * 109.47147 * 301.61103 * 12 11 10 39 39 H 0.96990 * 120.00270 * 179.97438 * 17 16 14 40 40 H 1.09007 * 117.49366 * 214.96984 * 22 13 12 41 41 H 1.08992 * 117.50077 * 359.97438 * 22 13 12 42 42 H 1.09004 * 117.49474 * 252.50759 * 23 22 13 43 43 H 1.09001 * 117.52275 * 107.48578 * 23 22 13 44 44 H 1.07998 * 119.96972 * 179.70595 * 24 6 5 45 45 H 1.07995 * 120.02808 * 180.24894 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0560 2.5169 0.0000 6 6 3.3018 3.6758 0.0016 7 6 3.9860 5.0186 0.0028 8 8 4.2017 5.4444 -1.3441 9 6 4.8488 6.7135 -1.4558 10 6 5.0279 7.0664 -2.9338 11 16 5.8488 8.6779 -3.0756 12 6 5.9707 8.9173 -4.8696 13 6 6.6883 10.2369 -5.1604 14 6 6.0919 11.4582 -4.5095 15 1 5.2432 11.9506 -4.9607 16 6 6.6263 11.9437 -3.3349 17 7 6.0895 12.9938 -2.7527 18 14 8.1129 11.1101 -2.5703 19 1 9.3528 11.7701 -3.0520 20 1 8.0360 11.2202 -1.0913 21 1 8.1316 9.6771 -2.9596 22 6 8.2091 10.1938 -5.3219 23 6 7.3158 10.4096 -6.5450 24 6 1.9210 3.6047 0.0078 25 6 1.2914 2.3750 0.0011 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 4.0208 0.3799 -0.0014 30 1 5.1345 2.5750 -0.0008 31 1 4.9441 4.9377 0.5161 32 1 3.3582 5.7458 0.5176 33 1 5.8249 6.6675 -0.9729 34 1 4.2393 7.4762 -0.9710 35 1 4.0519 7.1124 -3.4171 36 1 5.6376 6.3038 -3.4181 37 1 4.9701 8.9450 -5.3012 38 1 6.5332 8.0933 -5.3087 39 1 6.4652 13.3351 -1.9262 40 1 8.7784 11.0489 -4.9573 41 1 8.6987 9.2253 -5.2206 42 1 7.2177 9.5829 -7.2487 43 1 7.2969 11.4065 -6.9854 44 1 1.3341 4.5113 0.0139 45 1 0.2129 2.3201 0.0019 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596339893.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:39 Heat of formation + Delta-G solvation = -31.927984 kcal Electronic energy + Delta-G solvation = -23363.852237 eV Core-core repulsion = 19860.126173 eV Total energy + Delta-G solvation = -3503.726064 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.139 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.46791 -38.52635 -37.25176 -37.02528 -32.21412 -32.01579 -31.39030 -30.35657 -28.06304 -27.93412 -25.56235 -25.34524 -22.96648 -22.79196 -21.78926 -21.47172 -19.02830 -18.51093 -16.85404 -16.75519 -16.40387 -16.10112 -16.01377 -15.83268 -15.27052 -14.79405 -14.67081 -14.28620 -14.00938 -13.84984 -13.67141 -13.39570 -13.05633 -12.92430 -12.82764 -12.45191 -12.35292 -11.99236 -11.65555 -11.54323 -11.45990 -11.14674 -11.08768 -11.07706 -10.74379 -10.31669 -10.16734 -9.80787 -9.64309 -9.29452 -9.04273 -8.90945 -8.53748 -8.47675 -8.37155 -6.75524 -6.04427 -4.09398 1.01708 1.06580 2.12713 2.89693 3.32321 3.32756 3.45295 3.52349 3.65555 4.05648 4.43545 4.53232 4.54451 4.68957 4.72339 4.74065 4.92742 4.95824 5.03667 5.06342 5.10576 5.16989 5.23977 5.27519 5.34921 5.40972 5.56461 5.63613 5.73106 5.87994 5.91418 5.93141 5.98677 6.03620 6.06958 6.11898 6.34588 6.36320 6.42646 6.43997 6.66237 6.98897 7.02499 7.07037 7.13504 7.74168 8.51293 8.94838 9.57986 11.06363 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.025798 B = 0.002059 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.109473 B =13593.223047 C =13859.753583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.129 3.871 4 C -0.155 4.155 5 C -0.059 4.059 6 C -0.123 4.123 7 C 0.106 3.894 8 O -0.383 6.383 9 C 0.083 3.917 10 C -0.120 4.120 11 S -0.200 6.200 12 C -0.036 4.036 13 C 0.013 3.987 14 C -0.489 4.489 15 H 0.078 0.922 16 C 0.091 3.909 17 N -0.895 5.895 18 Si 0.849 3.151 19 H -0.285 1.285 20 H -0.297 1.297 21 H -0.212 1.212 22 C -0.199 4.199 23 C -0.175 4.175 24 C -0.057 4.057 25 C -0.211 4.211 26 H 0.100 0.900 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.264 0.736 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.128 0.872 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.794 -23.890 6.520 25.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.084 3.916 4 C -0.174 4.174 5 C -0.077 4.077 6 C -0.124 4.124 7 C 0.030 3.970 8 O -0.303 6.303 9 C 0.006 3.994 10 C -0.267 4.267 11 S 0.027 5.973 12 C -0.185 4.185 13 C 0.011 3.989 14 C -0.526 4.526 15 H 0.096 0.904 16 C -0.112 4.112 17 N -0.532 5.532 18 Si 0.678 3.322 19 H -0.212 1.212 20 H -0.224 1.224 21 H -0.136 1.136 22 C -0.236 4.236 23 C -0.215 4.215 24 C -0.076 4.076 25 C -0.230 4.230 26 H 0.118 0.882 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.149 0.851 30 H 0.149 0.851 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.108 0.892 44 H 0.145 0.855 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.456 -23.426 7.354 25.660 hybrid contribution 0.145 -0.768 -0.322 0.845 sum -7.311 -24.193 7.031 26.234 Atomic orbital electron populations 1.23069 0.78294 1.03976 1.01496 1.86065 1.21493 1.27017 1.88653 1.19084 0.92427 0.84134 0.95977 1.20415 0.91361 0.98646 1.06964 1.20904 1.00044 0.90847 0.95872 1.19551 0.93569 0.94299 1.04956 1.21219 0.98822 0.92357 0.84624 1.87940 1.80231 1.36658 1.25508 1.22091 0.96956 0.84767 0.95633 1.23364 1.04082 1.00833 0.98436 1.87512 1.77075 1.20547 1.12203 1.23075 1.03132 1.00246 0.92016 1.19101 0.90334 0.93199 0.96256 1.20146 1.16579 1.08195 1.07718 0.90402 1.24879 0.96639 0.93876 0.95819 1.69871 1.40985 1.23604 1.18702 0.87216 0.83004 0.84068 0.77937 1.21182 1.22413 1.13612 1.22983 0.95454 1.01059 1.04111 1.22969 1.06124 1.01218 0.91153 1.20890 0.93879 0.97260 0.95534 1.21222 1.00093 0.92235 1.09434 0.88208 0.92581 0.92520 0.85051 0.85079 0.92405 0.92369 0.92546 0.92183 0.90137 0.90484 0.90698 0.92459 0.92618 0.89454 0.90480 0.90971 0.89182 0.85456 0.85325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.96 10.50 -19.41 -0.20 -3.16 16 3 C 0.13 1.29 6.69 -39.21 -0.26 1.03 16 4 C -0.16 -1.52 9.99 -39.43 -0.39 -1.92 16 5 C -0.06 -0.58 9.69 -39.61 -0.38 -0.97 16 6 C -0.12 -1.33 5.51 -104.60 -0.58 -1.90 16 7 C 0.11 1.18 6.06 36.01 0.22 1.39 16 8 O -0.38 -5.36 10.33 -35.23 -0.36 -5.72 16 9 C 0.08 1.20 5.95 37.16 0.22 1.42 16 10 C -0.12 -1.92 6.31 37.16 0.23 -1.69 16 11 S -0.20 -4.11 17.22 -107.50 -1.85 -5.96 16 12 C -0.04 -0.73 5.87 37.16 0.22 -0.51 16 13 C 0.01 0.30 1.39 -155.67 -0.22 0.08 16 14 C -0.49 -13.51 8.91 -34.44 -0.31 -13.82 16 15 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 16 C 0.09 2.62 5.29 -17.82 -0.09 2.52 16 17 N -0.90 -27.40 13.96 55.43 0.77 -26.62 16 18 Si 0.85 21.36 22.54 -169.99 -3.83 17.53 16 19 H -0.28 -7.12 6.96 56.52 0.39 -6.72 16 20 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 21 H -0.21 -4.94 4.80 56.52 0.27 -4.66 16 22 C -0.20 -4.22 6.91 -26.73 -0.18 -4.40 16 23 C -0.18 -3.48 9.95 -26.73 -0.27 -3.75 16 24 C -0.06 -0.57 9.69 -39.60 -0.38 -0.96 16 25 C -0.21 -1.96 9.04 -39.43 -0.36 -2.31 16 26 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 28 H 0.06 0.27 7.66 -51.93 -0.40 -0.12 16 29 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 30 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 32 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 35 H 0.08 1.27 8.14 -51.92 -0.42 0.85 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.07 1.46 8.14 -51.92 -0.42 1.03 16 38 H 0.06 1.02 8.09 -51.92 -0.42 0.60 16 39 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 40 H 0.09 1.98 5.74 -51.92 -0.30 1.69 16 41 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 44 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 45 H 0.13 0.90 6.30 -52.49 -0.33 0.57 16 LS Contribution 375.92 15.07 5.67 5.67 Total: -1.00 -31.99 375.92 -8.81 -40.80 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -7.45 Total: 2.12 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: -1.54 Total: -24.64 kcal Atomic # 7 Polarization: -27.40 SS G_CDS: 0.77 Total: -26.62 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.57 Total: -8.88 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -3.83 Total: 17.53 kcal Atomic # 16 Polarization: -4.11 SS G_CDS: -1.85 Total: -5.96 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.99 -8.81 -40.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596339893.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.873 kcal (2) G-P(sol) polarization free energy of solvation -31.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds