Wall clock time and date at job start Tue Mar 31 2020 13:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35895 * 116.99966 * 2 1 4 4 C 1.38736 * 120.05636 * 180.02562 * 3 2 1 5 5 C 1.38142 * 119.94338 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.05788 * 0.02600 * 5 4 3 7 7 C 1.50701 * 119.94508 * 179.97438 * 6 5 4 8 8 O 1.42898 * 109.47066 * 89.99832 * 7 6 5 9 9 C 1.42896 * 113.99931 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47335 * 179.97438 * 9 8 7 11 11 S 1.81406 * 109.47291 * 179.97438 * 10 9 8 12 12 C 1.81397 * 103.00166 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47174 * 181.60710 * 12 11 10 14 14 C 1.50696 * 115.54860 * 305.21944 * 13 12 11 15 15 H 1.08002 * 120.00225 * 278.21059 * 14 13 12 16 16 C 1.37878 * 119.99672 * 97.94116 * 14 13 12 17 17 N 1.31521 * 120.00146 * 181.34555 * 16 14 13 18 18 Si 1.86796 * 120.00156 * 1.34746 * 16 14 13 19 19 H 1.48498 * 109.47513 * 92.60368 * 18 16 14 20 20 H 1.48507 * 109.47183 * 212.60603 * 18 16 14 21 21 H 1.48503 * 109.47191 * 332.60206 * 18 16 14 22 22 C 1.52998 * 117.51546 * 90.92566 * 13 12 11 23 23 C 1.52995 * 60.00079 * 107.48178 * 22 13 12 24 24 C 1.38269 * 120.10877 * 0.24607 * 6 5 4 25 25 C 1.38149 * 120.05682 * 359.45581 * 24 6 5 26 26 H 1.09003 * 109.46965 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47413 * 299.99702 * 1 2 3 28 28 H 1.09001 * 109.47648 * 60.00264 * 1 2 3 29 29 H 1.07995 * 120.02620 * 0.02562 * 4 3 2 30 30 H 1.08001 * 119.97216 * 180.02562 * 5 4 3 31 31 H 1.09000 * 109.47234 * 329.99641 * 7 6 5 32 32 H 1.08998 * 109.47108 * 209.99601 * 7 6 5 33 33 H 1.09003 * 109.47676 * 59.99791 * 9 8 7 34 34 H 1.09008 * 109.47333 * 300.00048 * 9 8 7 35 35 H 1.09004 * 109.46952 * 59.99925 * 10 9 8 36 36 H 1.08995 * 109.47126 * 300.00085 * 10 9 8 37 37 H 1.09005 * 109.46660 * 61.60654 * 12 11 10 38 38 H 1.09009 * 109.47147 * 301.61103 * 12 11 10 39 39 H 0.96990 * 120.00270 * 179.97438 * 17 16 14 40 40 H 1.09007 * 117.49366 * 214.96984 * 22 13 12 41 41 H 1.08992 * 117.50077 * 359.97438 * 22 13 12 42 42 H 1.09004 * 117.49474 * 252.50759 * 23 22 13 43 43 H 1.09001 * 117.52275 * 107.48578 * 23 22 13 44 44 H 1.07998 * 119.96972 * 179.70595 * 24 6 5 45 45 H 1.07995 * 120.02808 * 180.24894 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0560 2.5169 0.0000 6 6 3.3018 3.6758 0.0016 7 6 3.9860 5.0186 0.0028 8 8 4.2017 5.4444 -1.3441 9 6 4.8488 6.7135 -1.4558 10 6 5.0279 7.0664 -2.9338 11 16 5.8488 8.6779 -3.0756 12 6 5.9707 8.9173 -4.8696 13 6 6.6883 10.2369 -5.1604 14 6 6.0919 11.4582 -4.5095 15 1 5.2432 11.9506 -4.9607 16 6 6.6263 11.9437 -3.3349 17 7 6.0895 12.9938 -2.7527 18 14 8.1129 11.1101 -2.5703 19 1 9.3528 11.7701 -3.0520 20 1 8.0360 11.2202 -1.0913 21 1 8.1316 9.6771 -2.9596 22 6 8.2091 10.1938 -5.3219 23 6 7.3158 10.4096 -6.5450 24 6 1.9210 3.6047 0.0078 25 6 1.2914 2.3750 0.0011 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 4.0208 0.3799 -0.0014 30 1 5.1345 2.5750 -0.0008 31 1 4.9441 4.9377 0.5161 32 1 3.3582 5.7458 0.5176 33 1 5.8249 6.6675 -0.9729 34 1 4.2393 7.4762 -0.9710 35 1 4.0519 7.1124 -3.4171 36 1 5.6376 6.3038 -3.4181 37 1 4.9701 8.9450 -5.3012 38 1 6.5332 8.0933 -5.3087 39 1 6.4652 13.3351 -1.9262 40 1 8.7784 11.0489 -4.9573 41 1 8.6987 9.2253 -5.2206 42 1 7.2177 9.5829 -7.2487 43 1 7.2969 11.4065 -6.9854 44 1 1.3341 4.5113 0.0139 45 1 0.2129 2.3201 0.0019 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596339893.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:38 Heat of formation + Delta-G solvation = -50.620138 kcal Electronic energy + Delta-G solvation = -23364.662790 eV Core-core repulsion = 19860.126173 eV Total energy + Delta-G solvation = -3504.536617 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.139 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.14034 -39.37885 -38.75884 -38.07316 -34.19075 -33.14286 -32.10172 -31.31600 -29.64200 -28.48476 -27.49343 -26.26979 -23.99653 -23.65672 -23.42766 -22.19807 -20.88417 -19.15296 -18.38165 -17.86520 -17.54410 -17.13111 -16.86267 -16.75305 -16.66267 -16.36666 -15.68148 -15.49446 -15.13134 -14.85614 -14.78792 -14.58797 -14.54594 -14.27418 -14.00939 -13.63483 -13.50144 -12.98045 -12.86558 -12.79620 -12.55236 -12.51458 -12.26112 -12.03943 -11.97399 -11.90617 -11.76627 -11.67403 -10.92583 -10.67625 -10.65108 -10.52084 -10.06451 -10.00636 -9.19884 -8.39904 -8.21860 -6.32109 0.25356 0.34897 0.67808 1.43286 1.46528 1.62738 1.93111 2.33818 2.44786 2.55272 3.11145 3.13657 3.26301 3.77154 3.81708 3.91250 3.92624 4.01418 4.15511 4.15664 4.26656 4.31843 4.37303 4.37566 4.41260 4.44366 4.49452 4.51912 4.58736 4.70117 4.72645 4.74672 4.75750 4.78787 4.85315 5.04112 5.06866 5.22409 5.29941 5.32192 5.47781 5.60579 5.72362 5.74113 6.12891 6.29910 6.39452 6.73599 7.38854 8.89632 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.025798 B = 0.002059 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.109473 B =13593.223047 C =13859.753583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.120 3.880 4 C -0.167 4.167 5 C -0.064 4.064 6 C -0.141 4.141 7 C 0.103 3.897 8 O -0.395 6.395 9 C 0.087 3.913 10 C -0.094 4.094 11 S -0.269 6.269 12 C -0.022 4.022 13 C -0.019 4.019 14 C -0.483 4.483 15 H 0.031 0.969 16 C 0.039 3.961 17 N -0.949 5.949 18 Si 0.902 3.098 19 H -0.283 1.283 20 H -0.312 1.312 21 H -0.178 1.178 22 C -0.195 4.195 23 C -0.153 4.153 24 C -0.067 4.067 25 C -0.214 4.214 26 H 0.119 0.881 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.142 0.858 30 H 0.144 0.856 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.262 0.738 40 H 0.068 0.932 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.079 0.921 44 H 0.137 0.863 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.227 -27.112 5.862 28.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.074 3.926 4 C -0.185 4.185 5 C -0.082 4.082 6 C -0.141 4.141 7 C 0.027 3.973 8 O -0.315 6.315 9 C 0.010 3.990 10 C -0.242 4.242 11 S -0.043 6.043 12 C -0.170 4.170 13 C -0.021 4.021 14 C -0.520 4.520 15 H 0.049 0.951 16 C -0.159 4.159 17 N -0.588 5.588 18 Si 0.730 3.270 19 H -0.210 1.210 20 H -0.241 1.241 21 H -0.101 1.101 22 C -0.232 4.232 23 C -0.193 4.193 24 C -0.085 4.085 25 C -0.233 4.233 26 H 0.138 0.862 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.160 0.840 30 H 0.162 0.838 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.093 0.907 38 H 0.110 0.890 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.126 0.874 42 H 0.131 0.869 43 H 0.098 0.902 44 H 0.154 0.846 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.893 -26.669 6.663 28.340 hybrid contribution -0.202 0.170 -0.160 0.309 sum -7.095 -26.499 6.503 28.192 Atomic orbital electron populations 1.23351 0.76441 1.05640 1.02254 1.86047 1.23493 1.26778 1.88516 1.19297 0.92787 0.84696 0.95792 1.20646 0.91761 0.99113 1.07017 1.21092 1.00787 0.90708 0.95576 1.19653 0.94045 0.94307 1.06108 1.21381 0.99762 0.92736 0.83407 1.87905 1.80209 1.36006 1.27417 1.21970 0.97324 0.85147 0.94606 1.23226 1.03632 0.97649 0.99706 1.87630 1.78275 1.24560 1.13789 1.22930 1.03317 0.99531 0.91204 1.19040 0.91861 0.92536 0.98682 1.20308 1.14876 1.09551 1.07307 0.95071 1.25629 0.99413 0.94349 0.96486 1.70023 1.43244 1.26001 1.19563 0.86420 0.79533 0.85144 0.75940 1.21050 1.24095 1.10077 1.23018 0.93902 1.01881 1.04368 1.23023 1.03365 1.02329 0.90549 1.21103 0.93925 0.98012 0.95500 1.21451 1.01202 0.91757 1.08853 0.86231 0.91603 0.91921 0.83986 0.83819 0.91160 0.91643 0.91950 0.92738 0.89943 0.88953 0.90679 0.88971 0.92937 0.91373 0.87402 0.86920 0.90209 0.84557 0.83346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.27 16 2 O -0.33 -5.73 10.50 -92.37 -0.97 -6.70 16 3 C 0.12 2.25 6.69 22.51 0.15 2.40 16 4 C -0.17 -3.08 9.99 22.37 0.22 -2.86 16 5 C -0.06 -1.18 9.69 22.25 0.22 -0.97 16 6 C -0.14 -2.84 5.51 -19.85 -0.11 -2.95 16 7 C 0.10 2.12 6.06 71.24 0.43 2.55 16 8 O -0.39 -10.27 10.33 -148.98 -1.54 -11.81 16 9 C 0.09 2.36 5.95 71.98 0.43 2.79 16 10 C -0.09 -2.80 6.31 71.98 0.45 -2.35 16 11 S -0.27 -10.58 17.22 -56.49 -0.97 -11.55 16 12 C -0.02 -0.81 5.87 71.98 0.42 -0.39 16 13 C -0.02 -0.85 1.39 -52.93 -0.07 -0.92 16 14 C -0.48 -27.21 8.91 25.60 0.23 -26.98 16 15 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 16 C 0.04 2.30 5.29 84.65 0.45 2.75 16 17 N -0.95 -60.56 13.96 21.45 0.30 -60.26 16 18 Si 0.90 44.49 22.54 68.60 1.55 46.04 16 19 H -0.28 -13.71 6.96 99.48 0.69 -13.02 16 20 H -0.31 -16.05 7.11 99.48 0.71 -15.35 16 21 H -0.18 -7.76 4.80 99.48 0.48 -7.28 16 22 C -0.19 -7.61 6.91 30.59 0.21 -7.39 16 23 C -0.15 -5.61 9.95 30.59 0.30 -5.30 16 24 C -0.07 -1.26 9.69 22.26 0.22 -1.04 16 25 C -0.21 -3.65 9.04 22.37 0.20 -3.45 16 26 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.07 0.46 7.66 -2.39 -0.02 0.44 16 28 H 0.06 0.48 7.66 -2.39 -0.02 0.47 16 29 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 30 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 31 H 0.07 1.25 8.08 -2.39 -0.02 1.23 16 32 H 0.07 1.23 8.08 -2.39 -0.02 1.21 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 38 H 0.09 2.82 8.09 -2.39 -0.02 2.80 16 39 H 0.26 15.91 8.31 -92.72 -0.77 15.14 16 40 H 0.07 2.94 5.74 -2.38 -0.01 2.93 16 41 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 42 H 0.11 3.25 8.14 -2.38 -0.02 3.23 16 43 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 44 H 0.14 2.19 8.06 -2.91 -0.02 2.16 16 45 H 0.15 1.79 6.30 -2.91 -0.02 1.77 16 Total: -1.00 -71.27 375.92 3.94 -67.33 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.71 Total: 19.82 kcal Atomic # 6 Polarization: -47.72 SS G_CDS: 4.87 Total: -42.86 kcal Atomic # 7 Polarization: -60.56 SS G_CDS: 0.30 Total: -60.26 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -2.51 Total: -18.51 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.55 Total: 46.04 kcal Atomic # 16 Polarization: -10.58 SS G_CDS: -0.97 Total: -11.55 kcal Total: -71.27 3.94 -67.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596339893.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.710 kcal (2) G-P(sol) polarization free energy of solvation -71.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds