Wall clock time and date at job start Tue Mar 31 2020 12:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42908 * 109.47443 * 2 1 4 4 C 1.35994 * 117.00036 * 179.97438 * 3 2 1 5 5 C 1.38570 * 120.07395 * 359.95869 * 4 3 2 6 6 C 1.38237 * 119.99655 * 180.02562 * 5 4 3 7 7 C 1.38254 * 120.15011 * 359.97438 * 6 5 4 8 8 C 1.38245 * 120.14527 * 0.03408 * 7 6 5 9 9 C 1.38567 * 119.99786 * 359.96817 * 8 7 6 10 10 O 1.35992 * 120.07200 * 180.02562 * 9 8 7 11 11 C 1.42904 * 116.99797 * 359.97438 * 10 9 8 12 12 C 1.53010 * 109.46930 * 180.02562 * 11 10 9 13 13 S 1.81402 * 109.46820 * 179.97438 * 12 11 10 14 14 C 1.81400 * 102.99497 * 179.97438 * 13 12 11 15 15 C 1.53008 * 109.46883 * 175.10025 * 14 13 12 16 16 C 1.50703 * 115.54485 * 65.25193 * 15 14 13 17 17 H 1.07997 * 119.99740 * 268.61083 * 16 15 14 18 18 C 1.37883 * 119.99903 * 88.61607 * 16 15 14 19 19 N 1.31510 * 119.99785 * 174.71890 * 18 16 15 20 20 Si 1.86797 * 120.00117 * 354.71741 * 18 16 15 21 21 H 1.48502 * 109.47188 * 92.47474 * 20 18 16 22 22 H 1.48497 * 109.47078 * 212.47920 * 20 18 16 23 23 H 1.48503 * 109.47075 * 332.48016 * 20 18 16 24 24 C 1.52991 * 117.50051 * 279.57979 * 15 14 13 25 25 C 1.52995 * 117.49984 * 210.91615 * 15 14 13 26 26 H 1.08992 * 109.47267 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47057 * 300.00160 * 1 2 3 28 28 H 1.09002 * 109.46963 * 59.99514 * 1 2 3 29 29 H 1.09005 * 109.47409 * 239.99827 * 2 1 3 30 30 H 1.08998 * 109.47185 * 120.00028 * 2 1 3 31 31 H 1.08000 * 119.99766 * 0.04406 * 5 4 3 32 32 H 1.08003 * 119.92314 * 180.27682 * 6 5 4 33 33 H 1.07994 * 119.92645 * 180.02562 * 7 6 5 34 34 H 1.08003 * 119.99892 * 180.02562 * 8 7 6 35 35 H 1.08999 * 109.46885 * 299.99732 * 11 10 9 36 36 H 1.08997 * 109.47521 * 60.00373 * 11 10 9 37 37 H 1.09001 * 109.46725 * 299.99970 * 12 11 10 38 38 H 1.08997 * 109.46791 * 59.99831 * 12 11 10 39 39 H 1.08993 * 109.47459 * 295.10380 * 14 13 12 40 40 H 1.09004 * 109.47563 * 55.10745 * 14 13 12 41 41 H 0.96996 * 120.00295 * 179.97438 * 19 18 16 42 42 H 1.09003 * 117.50230 * 0.02562 * 24 15 14 43 43 H 1.09003 * 117.49772 * 145.02030 * 24 15 14 44 44 H 1.08999 * 117.49901 * 214.98161 * 25 15 14 45 45 H 1.09003 * 117.49897 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3546 1.5254 0.0005 5 6 4.2001 0.4276 0.0019 6 6 5.5703 0.6105 0.0030 7 6 6.1004 1.8873 0.0022 8 6 5.2625 2.9869 0.0010 9 6 3.8881 2.8106 -0.0001 10 8 3.0625 3.8912 -0.0018 11 6 3.6804 5.1798 -0.0018 12 6 2.6001 6.2634 -0.0032 13 16 3.3845 7.8990 -0.0025 14 6 1.9672 9.0311 -0.0051 15 6 2.4656 10.4725 0.1184 16 6 3.2822 10.9794 -1.0423 17 1 4.3572 10.8758 -1.0323 18 6 2.6570 11.5757 -2.1169 19 7 3.3740 12.1108 -3.0808 20 14 0.7917 11.6233 -2.2036 21 1 0.3002 12.8883 -1.6006 22 1 0.3601 11.5509 -3.6226 23 1 0.2317 10.4686 -1.4564 24 6 2.8354 10.9748 1.5154 25 6 1.5585 11.4746 0.8351 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.7885 -0.5709 0.0019 32 1 6.2282 -0.2461 -0.0004 33 1 7.1714 2.0260 0.0026 34 1 5.6792 3.9833 -0.0001 35 1 4.2996 5.2857 0.8889 36 1 4.3018 5.2847 -0.8911 37 1 1.9805 6.1575 -0.8937 38 1 1.9790 6.1583 0.8863 39 1 1.4126 8.9170 -0.9364 40 1 1.3150 8.7989 0.8369 41 1 2.9342 12.5299 -3.8370 42 1 2.7242 10.2784 2.3465 43 1 3.6693 11.6724 1.5949 44 1 1.5528 12.5007 0.4675 45 1 0.6065 11.1073 1.2183 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596340649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:48 Heat of formation + Delta-G solvation = -27.839843 kcal Electronic energy + Delta-G solvation = -23728.770992 eV Core-core repulsion = 20225.222203 eV Total energy + Delta-G solvation = -3503.548789 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.139 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.69384 -38.76552 -37.10486 -36.98251 -32.40860 -32.08363 -31.63563 -30.42105 -29.06158 -28.09158 -25.45721 -24.72584 -23.33259 -22.48047 -21.64599 -21.30834 -19.08334 -18.90550 -17.58082 -16.57971 -16.55263 -16.31711 -15.99872 -15.38284 -15.02665 -14.96861 -14.86351 -14.23142 -13.96707 -13.82605 -13.40406 -13.22370 -13.05836 -12.89400 -12.81585 -12.49797 -12.22669 -12.17024 -12.04035 -11.80531 -11.33231 -11.20869 -11.07170 -11.03341 -10.84509 -10.72632 -10.47212 -10.16861 -9.69727 -9.47621 -9.06151 -8.95816 -8.59037 -8.40615 -7.98422 -7.00584 -6.10247 -4.12600 1.07512 1.24841 1.90472 2.94952 3.20019 3.27324 3.36485 3.37263 3.40594 3.53468 4.41225 4.50704 4.59907 4.63710 4.76423 4.81267 4.89441 4.89742 4.93898 4.96128 5.13250 5.16167 5.16590 5.28955 5.36044 5.47431 5.48661 5.61338 5.69077 5.73415 5.84711 5.90363 5.97707 6.04145 6.07025 6.11597 6.28716 6.35304 6.45758 6.47342 6.70676 6.93208 7.01263 7.10682 7.44712 7.71183 8.49943 8.95258 9.52567 11.01738 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.017347 B = 0.002437 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.711415 B =11485.246856 C =12095.223491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.305 6.305 4 C 0.098 3.902 5 C -0.176 4.176 6 C -0.122 4.122 7 C -0.116 4.116 8 C -0.173 4.173 9 C 0.108 3.892 10 O -0.304 6.304 11 C 0.080 3.920 12 C -0.111 4.111 13 S -0.208 6.208 14 C -0.040 4.040 15 C 0.012 3.988 16 C -0.481 4.481 17 H 0.081 0.919 18 C 0.079 3.921 19 N -0.895 5.895 20 Si 0.877 3.123 21 H -0.278 1.278 22 H -0.293 1.293 23 H -0.261 1.261 24 C -0.172 4.172 25 C -0.193 4.193 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.132 0.868 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.138 0.862 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.057 0.943 41 H 0.264 0.736 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.122 -24.860 7.534 26.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.219 6.219 4 C 0.052 3.948 5 C -0.195 4.195 6 C -0.141 4.141 7 C -0.134 4.134 8 C -0.191 4.191 9 C 0.062 3.938 10 O -0.218 6.218 11 C 0.004 3.996 12 C -0.259 4.259 13 S 0.019 5.981 14 C -0.188 4.188 15 C 0.010 3.990 16 C -0.518 4.518 17 H 0.099 0.901 18 C -0.123 4.123 19 N -0.532 5.532 20 Si 0.705 3.295 21 H -0.204 1.204 22 H -0.220 1.220 23 H -0.185 1.185 24 C -0.210 4.210 25 C -0.233 4.233 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.150 0.850 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.156 0.844 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.426 -24.389 7.334 25.471 hybrid contribution -2.108 -0.319 -0.217 2.143 sum -2.534 -24.707 7.117 25.837 Atomic orbital electron populations 1.21762 0.92714 1.02667 1.03784 1.22773 0.96024 0.82265 1.01072 1.86203 1.18115 1.28634 1.88933 1.18242 0.83148 0.91175 1.02197 1.21040 0.94129 0.97249 1.07036 1.20834 0.94171 0.97339 1.01720 1.20888 0.99795 0.91852 1.00851 1.21213 0.91212 1.00794 1.05919 1.18277 0.89153 0.85329 1.01064 1.86147 1.34278 1.12771 1.88602 1.22425 0.95150 0.79475 1.02527 1.23251 1.00988 0.95930 1.05714 1.86963 1.16665 0.96510 1.97963 1.23341 0.95302 0.97220 1.02968 1.19017 0.98789 0.87695 0.93491 1.20204 0.94374 1.37528 0.99691 0.90060 1.24954 0.97913 0.94181 0.95269 1.69890 1.35675 1.37215 1.10405 0.86897 0.86667 0.79221 0.76755 1.20419 1.21972 1.18524 1.22837 0.98275 1.03658 0.96207 1.23042 0.93502 1.00321 1.06398 0.90474 0.91450 0.91400 0.92205 0.92234 0.85028 0.85710 0.85495 0.84383 0.91143 0.90873 0.89540 0.89896 0.90312 0.92459 0.92562 0.90675 0.89297 0.89090 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.28 37.15 0.38 -0.65 16 2 C 0.05 0.44 5.46 37.15 0.20 0.64 16 3 O -0.30 -3.82 9.92 -34.23 -0.34 -4.16 16 4 C 0.10 1.22 6.70 -39.12 -0.26 0.96 16 5 C -0.18 -1.71 9.04 -39.46 -0.36 -2.07 16 6 C -0.12 -1.09 10.04 -39.58 -0.40 -1.49 16 7 C -0.12 -1.11 10.04 -39.57 -0.40 -1.51 16 8 C -0.17 -1.98 9.04 -39.46 -0.36 -2.34 16 9 C 0.11 1.46 6.70 -39.12 -0.26 1.19 16 10 O -0.30 -4.52 9.92 -34.22 -0.34 -4.86 16 11 C 0.08 1.11 4.75 37.16 0.18 1.28 16 12 C -0.11 -1.69 6.31 37.16 0.23 -1.46 16 13 S -0.21 -3.95 21.43 -107.50 -2.30 -6.26 16 14 C -0.04 -0.82 5.42 37.16 0.20 -0.62 16 15 C 0.01 0.28 0.79 -155.66 -0.12 0.16 16 16 C -0.48 -13.18 9.07 -34.44 -0.31 -13.50 16 17 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 18 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 19 N -0.89 -26.99 13.96 55.43 0.77 -26.22 16 20 Si 0.88 21.32 24.95 -169.99 -4.24 17.08 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.26 -5.95 5.69 56.52 0.32 -5.63 16 24 C -0.17 -3.48 9.96 -26.70 -0.27 -3.75 16 25 C -0.19 -4.02 7.67 -26.70 -0.20 -4.23 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 30 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 31 H 0.13 0.94 6.30 -52.49 -0.33 0.61 16 32 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 33 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.14 1.44 6.30 -52.48 -0.33 1.11 16 35 H 0.07 0.89 7.66 -51.93 -0.40 0.50 16 36 H 0.07 0.98 7.66 -51.93 -0.40 0.58 16 37 H 0.09 1.33 8.14 -51.92 -0.42 0.91 16 38 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.08 1.69 6.54 -51.93 -0.34 1.35 16 40 H 0.06 1.04 8.09 -51.92 -0.42 0.62 16 41 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.09 1.83 8.14 -51.93 -0.42 1.40 16 44 H 0.09 1.99 7.33 -51.93 -0.38 1.61 16 45 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 379.65 15.07 5.72 5.72 Total: -1.00 -31.27 379.65 -9.83 -41.10 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -7.26 Total: 2.82 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: -1.84 Total: -25.22 kcal Atomic # 7 Polarization: -26.99 SS G_CDS: 0.77 Total: -26.22 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.68 Total: -9.02 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.24 Total: 17.08 kcal Atomic # 16 Polarization: -3.95 SS G_CDS: -2.30 Total: -6.26 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.27 -9.83 -41.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596340649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.259 kcal (2) G-P(sol) polarization free energy of solvation -31.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds