Wall clock time and date at job start Tue Mar 31 2020 12:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42908 * 109.47443 * 2 1 4 4 C 1.35994 * 117.00036 * 179.97438 * 3 2 1 5 5 C 1.38570 * 120.07395 * 359.95869 * 4 3 2 6 6 C 1.38237 * 119.99655 * 180.02562 * 5 4 3 7 7 C 1.38254 * 120.15011 * 359.97438 * 6 5 4 8 8 C 1.38245 * 120.14527 * 0.03408 * 7 6 5 9 9 C 1.38567 * 119.99786 * 359.96817 * 8 7 6 10 10 O 1.35992 * 120.07200 * 180.02562 * 9 8 7 11 11 C 1.42904 * 116.99797 * 359.97438 * 10 9 8 12 12 C 1.53010 * 109.46930 * 180.02562 * 11 10 9 13 13 S 1.81402 * 109.46820 * 179.97438 * 12 11 10 14 14 C 1.81400 * 102.99497 * 179.97438 * 13 12 11 15 15 C 1.53008 * 109.46883 * 175.10025 * 14 13 12 16 16 C 1.50703 * 115.54485 * 65.25193 * 15 14 13 17 17 H 1.07997 * 119.99740 * 268.61083 * 16 15 14 18 18 C 1.37883 * 119.99903 * 88.61607 * 16 15 14 19 19 N 1.31510 * 119.99785 * 174.71890 * 18 16 15 20 20 Si 1.86797 * 120.00117 * 354.71741 * 18 16 15 21 21 H 1.48502 * 109.47188 * 92.47474 * 20 18 16 22 22 H 1.48497 * 109.47078 * 212.47920 * 20 18 16 23 23 H 1.48503 * 109.47075 * 332.48016 * 20 18 16 24 24 C 1.52991 * 117.50051 * 279.57979 * 15 14 13 25 25 C 1.52995 * 117.49984 * 210.91615 * 15 14 13 26 26 H 1.08992 * 109.47267 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47057 * 300.00160 * 1 2 3 28 28 H 1.09002 * 109.46963 * 59.99514 * 1 2 3 29 29 H 1.09005 * 109.47409 * 239.99827 * 2 1 3 30 30 H 1.08998 * 109.47185 * 120.00028 * 2 1 3 31 31 H 1.08000 * 119.99766 * 0.04406 * 5 4 3 32 32 H 1.08003 * 119.92314 * 180.27682 * 6 5 4 33 33 H 1.07994 * 119.92645 * 180.02562 * 7 6 5 34 34 H 1.08003 * 119.99892 * 180.02562 * 8 7 6 35 35 H 1.08999 * 109.46885 * 299.99732 * 11 10 9 36 36 H 1.08997 * 109.47521 * 60.00373 * 11 10 9 37 37 H 1.09001 * 109.46725 * 299.99970 * 12 11 10 38 38 H 1.08997 * 109.46791 * 59.99831 * 12 11 10 39 39 H 1.08993 * 109.47459 * 295.10380 * 14 13 12 40 40 H 1.09004 * 109.47563 * 55.10745 * 14 13 12 41 41 H 0.96996 * 120.00295 * 179.97438 * 19 18 16 42 42 H 1.09003 * 117.50230 * 0.02562 * 24 15 14 43 43 H 1.09003 * 117.49772 * 145.02030 * 24 15 14 44 44 H 1.08999 * 117.49901 * 214.98161 * 25 15 14 45 45 H 1.09003 * 117.49897 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3546 1.5254 0.0005 5 6 4.2001 0.4276 0.0019 6 6 5.5703 0.6105 0.0030 7 6 6.1004 1.8873 0.0022 8 6 5.2625 2.9869 0.0010 9 6 3.8881 2.8106 -0.0001 10 8 3.0625 3.8912 -0.0018 11 6 3.6804 5.1798 -0.0018 12 6 2.6001 6.2634 -0.0032 13 16 3.3845 7.8990 -0.0025 14 6 1.9672 9.0311 -0.0051 15 6 2.4656 10.4725 0.1184 16 6 3.2822 10.9794 -1.0423 17 1 4.3572 10.8758 -1.0323 18 6 2.6570 11.5757 -2.1169 19 7 3.3740 12.1108 -3.0808 20 14 0.7917 11.6233 -2.2036 21 1 0.3002 12.8883 -1.6006 22 1 0.3601 11.5509 -3.6226 23 1 0.2317 10.4686 -1.4564 24 6 2.8354 10.9748 1.5154 25 6 1.5585 11.4746 0.8351 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.7885 -0.5709 0.0019 32 1 6.2282 -0.2461 -0.0004 33 1 7.1714 2.0260 0.0026 34 1 5.6792 3.9833 -0.0001 35 1 4.2996 5.2857 0.8889 36 1 4.3018 5.2847 -0.8911 37 1 1.9805 6.1575 -0.8937 38 1 1.9790 6.1583 0.8863 39 1 1.4126 8.9170 -0.9364 40 1 1.3150 8.7989 0.8369 41 1 2.9342 12.5299 -3.8370 42 1 2.7242 10.2784 2.3465 43 1 3.6693 11.6724 1.5949 44 1 1.5528 12.5007 0.4675 45 1 0.6065 11.1073 1.2183 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596340649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:47 Heat of formation + Delta-G solvation = -44.342609 kcal Electronic energy + Delta-G solvation = -23729.486606 eV Core-core repulsion = 20225.222203 eV Total energy + Delta-G solvation = -3504.264403 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.139 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.53053 -39.66031 -38.72229 -37.91482 -34.22336 -33.25665 -32.49689 -31.21555 -29.92398 -29.69145 -27.50333 -25.59608 -24.21999 -23.29181 -23.28383 -22.14157 -20.91538 -19.78549 -18.43468 -18.41991 -17.47255 -17.28878 -16.94525 -16.85533 -16.71440 -15.81909 -15.76063 -15.52299 -15.11443 -15.03177 -14.84512 -14.77337 -14.38016 -14.08843 -13.80577 -13.48445 -13.38705 -13.10469 -12.95559 -12.85655 -12.80944 -12.62886 -12.18297 -12.12713 -11.95235 -11.90126 -11.85622 -11.65680 -11.64567 -11.02670 -10.84579 -10.65981 -10.15306 -9.74844 -8.84132 -8.52346 -8.27043 -6.33563 0.28664 0.44255 0.52994 1.35406 1.38083 1.48794 1.75829 2.25334 2.35255 2.37767 2.74635 3.06549 3.26635 3.64773 3.75837 3.85800 3.98737 4.00985 4.05597 4.05650 4.20241 4.23386 4.25623 4.33331 4.40067 4.41684 4.43767 4.47938 4.54033 4.61241 4.70573 4.73275 4.86168 4.86253 4.92676 5.07717 5.16599 5.25063 5.31359 5.33782 5.48243 5.52782 5.70344 5.74684 6.08121 6.32468 6.60194 6.74082 7.35043 8.88914 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.017347 B = 0.002437 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.711415 B =11485.246856 C =12095.223491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.045 3.955 3 O -0.334 6.334 4 C 0.079 3.921 5 C -0.174 4.174 6 C -0.115 4.115 7 C -0.120 4.120 8 C -0.181 4.181 9 C 0.071 3.929 10 O -0.323 6.323 11 C 0.087 3.913 12 C -0.092 4.092 13 S -0.248 6.248 14 C -0.033 4.033 15 C -0.016 4.016 16 C -0.476 4.476 17 H 0.030 0.970 18 C 0.021 3.979 19 N -0.949 5.949 20 Si 0.936 3.064 21 H -0.267 1.267 22 H -0.300 1.300 23 H -0.232 1.232 24 C -0.158 4.158 25 C -0.183 4.183 26 H 0.104 0.896 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.151 0.849 34 H 0.140 0.860 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.089 0.911 41 H 0.265 0.735 42 H 0.106 0.894 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.482 -27.617 9.248 29.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.249 6.249 4 C 0.033 3.967 5 C -0.192 4.192 6 C -0.133 4.133 7 C -0.138 4.138 8 C -0.200 4.200 9 C 0.025 3.975 10 O -0.238 6.238 11 C 0.011 3.989 12 C -0.240 4.240 13 S -0.020 6.020 14 C -0.182 4.182 15 C -0.018 4.018 16 C -0.514 4.514 17 H 0.048 0.952 18 C -0.177 4.177 19 N -0.589 5.589 20 Si 0.761 3.239 21 H -0.192 1.192 22 H -0.227 1.227 23 H -0.155 1.155 24 C -0.195 4.195 25 C -0.222 4.222 26 H 0.122 0.878 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.176 0.824 32 H 0.176 0.824 33 H 0.168 0.832 34 H 0.157 0.843 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.114 0.886 39 H 0.084 0.916 40 H 0.108 0.892 41 H 0.073 0.927 42 H 0.124 0.876 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.784 -27.163 9.080 28.696 hybrid contribution -1.523 0.401 -0.726 1.734 sum -3.307 -26.762 8.354 28.230 Atomic orbital electron populations 1.21804 0.92039 1.04128 1.02794 1.23072 0.96639 0.80818 1.02411 1.86164 1.18396 1.31207 1.89150 1.18557 0.83666 0.91564 1.02866 1.21399 0.94325 0.97674 1.05809 1.21282 0.94335 0.98122 0.99599 1.21248 1.00861 0.91698 1.00039 1.21377 0.90853 1.01720 1.06048 1.18658 0.89923 0.85340 1.03549 1.86079 1.35173 1.13134 1.89386 1.22282 0.94534 0.79288 1.02807 1.23147 1.01024 0.93684 1.06178 1.87083 1.17692 0.99226 1.98045 1.23152 0.95641 0.95739 1.03626 1.18904 1.00414 0.89486 0.93015 1.20309 0.92699 1.36824 1.01568 0.95174 1.25815 1.03051 0.93970 0.94827 1.70051 1.37926 1.39355 1.11576 0.85924 0.80616 0.80626 0.76737 1.19249 1.22688 1.15475 1.22859 0.97775 1.03336 0.95519 1.23101 0.95006 0.98972 1.05143 0.87757 0.92308 0.92491 0.90877 0.90683 0.82387 0.82417 0.83151 0.84270 0.90323 0.91218 0.89819 0.88577 0.91589 0.89235 0.92658 0.87596 0.90563 0.90524 0.87511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 10.28 71.98 0.74 -1.12 16 2 C 0.04 0.66 5.46 71.98 0.39 1.05 16 3 O -0.33 -8.26 9.92 -79.62 -0.79 -9.05 16 4 C 0.08 1.91 6.70 22.57 0.15 2.07 16 5 C -0.17 -2.98 9.04 22.35 0.20 -2.78 16 6 C -0.12 -1.72 10.04 22.27 0.22 -1.49 16 7 C -0.12 -2.07 10.04 22.27 0.22 -1.85 16 8 C -0.18 -4.07 9.04 22.35 0.20 -3.87 16 9 C 0.07 1.91 6.70 22.57 0.15 2.06 16 10 O -0.32 -9.71 9.92 -79.59 -0.79 -10.50 16 11 C 0.09 2.40 4.75 71.99 0.34 2.74 16 12 C -0.09 -2.74 6.31 71.99 0.45 -2.29 16 13 S -0.25 -9.32 21.43 -56.49 -1.21 -10.53 16 14 C -0.03 -1.30 5.42 71.98 0.39 -0.91 16 15 C -0.02 -0.72 0.79 -52.93 -0.04 -0.76 16 16 C -0.48 -26.90 9.07 25.60 0.23 -26.67 16 17 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 18 C 0.02 1.19 5.47 84.66 0.46 1.65 16 19 N -0.95 -59.71 13.96 21.45 0.30 -59.41 16 20 Si 0.94 43.80 24.95 68.60 1.71 45.51 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 22 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 23 H -0.23 -9.68 5.69 99.48 0.57 -9.12 16 24 C -0.16 -6.05 9.96 30.62 0.30 -5.75 16 25 C -0.18 -7.09 7.67 30.62 0.23 -6.86 16 26 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.85 7.67 -2.38 -0.02 0.83 16 30 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16 31 H 0.16 1.74 6.30 -2.91 -0.02 1.72 16 32 H 0.16 1.29 8.06 -2.91 -0.02 1.26 16 33 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 34 H 0.14 2.92 6.30 -2.91 -0.02 2.90 16 35 H 0.08 1.99 7.66 -2.39 -0.02 1.97 16 36 H 0.07 1.92 7.66 -2.39 -0.02 1.90 16 37 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.10 2.61 8.14 -2.39 -0.02 2.60 16 39 H 0.07 2.71 6.54 -2.39 -0.02 2.70 16 40 H 0.09 2.91 8.09 -2.39 -0.02 2.89 16 41 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 42 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 43 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 44 H 0.08 3.20 7.33 -2.39 -0.02 3.18 16 45 H 0.11 3.43 8.14 -2.39 -0.02 3.42 16 Total: -1.00 -71.35 379.65 4.71 -66.64 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 0.82 Total: 22.12 kcal Atomic # 6 Polarization: -49.44 SS G_CDS: 4.67 Total: -44.77 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: 0.30 Total: -59.41 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -1.58 Total: -19.55 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.71 Total: 45.51 kcal Atomic # 16 Polarization: -9.32 SS G_CDS: -1.21 Total: -10.53 kcal Total: -71.35 4.71 -66.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596340649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.296 kcal (2) G-P(sol) polarization free energy of solvation -71.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds