Wall clock time and date at job start Tue Mar 31 2020 13:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99864 * 2 1 4 4 H 1.48507 * 109.47200 * 240.00066 * 3 2 1 5 5 H 1.48496 * 109.47603 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47091 * 120.00467 * 3 2 1 7 7 C 1.37876 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00055 * 173.69229 * 7 2 1 9 9 C 1.50701 * 119.99837 * 353.68999 * 7 2 1 10 10 C 1.52996 * 115.54880 * 85.66130 * 9 7 2 11 11 S 1.81396 * 109.47415 * 65.33024 * 10 9 7 12 12 C 1.81399 * 102.99960 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47229 * 180.02562 * 12 11 10 14 14 N 1.29949 * 126.28500 * 89.97381 * 13 12 11 15 15 O 1.21306 * 110.24942 * 180.02562 * 14 13 12 16 16 C 1.33645 * 109.80987 * 359.97438 * 15 14 13 17 17 C 1.50701 * 126.54973 * 179.97438 * 16 15 14 18 18 C 1.52998 * 109.47105 * 60.02625 * 17 16 15 19 19 C 1.52999 * 109.47109 * 180.02562 * 18 17 16 20 20 C 1.52999 * 109.47291 * 60.00099 * 19 18 17 21 21 C 1.53010 * 109.46685 * 299.99919 * 20 19 18 22 22 C 1.52990 * 109.47220 * 300.02529 * 17 16 15 23 23 N 1.31130 * 106.89750 * 0.22736 * 16 15 14 24 24 C 1.53001 * 117.49691 * 231.32756 * 9 7 2 25 25 C 1.52999 * 117.49917 * 299.98678 * 9 7 2 26 26 H 0.96994 * 120.00072 * 354.97012 * 1 2 3 27 27 H 1.09001 * 109.47095 * 305.32434 * 10 9 7 28 28 H 1.09006 * 109.47178 * 185.33179 * 10 9 7 29 29 H 1.08999 * 109.47452 * 60.00351 * 12 11 10 30 30 H 1.09001 * 109.47081 * 299.99534 * 12 11 10 31 31 H 1.08999 * 109.46952 * 180.02562 * 17 16 15 32 32 H 1.09002 * 109.47402 * 299.99766 * 18 17 16 33 33 H 1.09001 * 109.47755 * 59.99867 * 18 17 16 34 34 H 1.08999 * 109.46928 * 299.99608 * 19 18 17 35 35 H 1.09001 * 109.47144 * 180.02562 * 19 18 17 36 36 H 1.08998 * 109.47344 * 180.02562 * 20 19 18 37 37 H 1.08993 * 109.47188 * 59.99667 * 20 19 18 38 38 H 1.08999 * 109.47103 * 300.00227 * 21 20 19 39 39 H 1.09004 * 109.46756 * 179.97438 * 21 20 19 40 40 H 1.09001 * 109.47252 * 300.00162 * 22 17 16 41 41 H 1.08999 * 109.47390 * 59.99984 * 22 17 16 42 42 H 1.08999 * 117.50075 * 215.00180 * 24 9 7 43 43 H 1.08999 * 117.50170 * 0.02562 * 24 9 7 44 44 H 1.09000 * 117.50021 * 359.97438 * 25 9 7 45 45 H 1.09000 * 117.49886 * 144.97273 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0797 -1.1968 -0.1033 9 6 1.2579 -2.4952 0.1423 10 6 0.7098 -3.0876 -1.1575 11 16 2.0896 -3.5543 -2.2385 12 6 1.2530 -4.2251 -3.7015 13 6 2.2818 -4.6653 -4.7109 14 7 2.8206 -5.8449 -4.7955 15 8 3.6125 -5.8798 -5.7138 16 6 3.6549 -4.6900 -6.3208 17 6 4.5100 -4.3161 -7.5041 18 6 4.1619 -5.2179 -8.6901 19 6 5.0305 -4.8388 -9.8912 20 6 6.5064 -5.0181 -9.5302 21 6 6.8545 -4.1162 -8.3442 22 6 5.9860 -4.4949 -7.1435 23 7 2.8144 -3.9084 -5.6867 24 6 1.7409 -3.4727 1.2157 25 6 0.4341 -2.7010 1.4151 26 1 -0.4850 0.8368 0.0736 27 1 0.0884 -2.3469 -1.6607 28 1 0.1113 -3.9700 -0.9306 29 1 0.6178 -3.4562 -4.1414 30 1 0.6413 -5.0792 -3.4107 31 1 4.3248 -3.2759 -7.7720 32 1 4.3471 -6.2582 -8.4222 33 1 3.1103 -5.0906 -8.9471 34 1 4.8457 -3.7986 -10.1593 35 1 4.7822 -5.4810 -10.7363 36 1 7.1252 -4.7476 -10.3858 37 1 6.6911 -6.0583 -9.2621 38 1 6.6697 -3.0760 -8.6123 39 1 7.9059 -4.2443 -8.0867 40 1 6.2340 -3.8525 -6.2986 41 1 6.1712 -5.5351 -6.8756 42 1 1.6682 -4.5378 0.9959 43 1 2.5985 -3.1745 1.8188 44 1 0.4325 -1.8954 2.1493 45 1 -0.4986 -3.2580 1.3264 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596351607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:23 Heat of formation + Delta-G solvation = 63.774128 kcal Electronic energy + Delta-G solvation = -24162.854358 eV Core-core repulsion = 20695.571000 eV Total energy + Delta-G solvation = -3467.283358 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.57274 -38.99019 -36.58913 -36.02009 -33.64722 -31.93281 -31.19639 -30.73380 -29.09294 -27.61229 -25.31120 -24.45194 -23.39240 -23.02723 -21.30959 -21.12479 -19.98828 -19.20155 -18.08000 -17.52648 -16.25543 -16.12722 -15.29076 -15.25518 -14.62673 -14.61502 -14.60774 -14.23652 -13.86284 -13.52408 -13.34177 -13.12120 -13.03042 -12.66482 -12.62958 -12.48248 -11.85676 -11.71364 -11.60879 -11.54523 -11.28020 -11.03537 -10.99665 -10.89827 -10.86684 -10.72567 -10.64613 -10.47975 -10.22191 -9.88258 -9.68385 -9.27687 -8.83610 -8.43437 -8.03968 -6.88361 -6.04339 -4.09766 1.10710 1.79121 2.74992 2.78957 3.32899 3.34443 3.37707 3.41964 3.56074 4.00408 4.29632 4.30250 4.43248 4.45314 4.74713 4.80939 4.93639 5.01943 5.02819 5.08702 5.22616 5.24627 5.31600 5.37407 5.43475 5.55082 5.63258 5.67993 5.68898 5.72854 5.76970 5.85845 5.88110 5.93426 6.01064 6.07633 6.18461 6.37361 6.50655 6.72070 6.78961 7.05269 7.38089 7.47405 7.89061 8.21814 8.38923 8.91908 9.56686 11.04819 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016897 B = 0.002705 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.715043 B =10348.356192 C =11316.815462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.073 3.927 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.486 4.486 8 H 0.061 0.939 9 C 0.055 3.945 10 C -0.028 4.028 11 S -0.211 6.211 12 C -0.022 4.022 13 C 0.200 3.800 14 N -0.375 5.375 15 O 0.080 5.920 16 C 0.178 3.822 17 C 0.010 3.990 18 C -0.116 4.116 19 C -0.117 4.117 20 C -0.123 4.123 21 C -0.117 4.117 22 C -0.118 4.118 23 N -0.465 5.465 24 C -0.205 4.205 25 C -0.146 4.146 26 H 0.260 0.740 27 H 0.087 0.913 28 H 0.050 0.950 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.116 0.884 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.423 -10.721 -18.902 23.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.130 4.130 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.524 4.524 8 H 0.080 0.920 9 C 0.053 3.947 10 C -0.176 4.176 11 S 0.015 5.985 12 C -0.171 4.171 13 C -0.073 4.073 14 N -0.083 5.083 15 O 0.020 5.980 16 C -0.043 4.043 17 C -0.010 4.010 18 C -0.155 4.155 19 C -0.154 4.154 20 C -0.161 4.161 21 C -0.155 4.155 22 C -0.157 4.157 23 N -0.198 5.198 24 C -0.243 4.243 25 C -0.186 4.186 26 H 0.070 0.930 27 H 0.106 0.894 28 H 0.069 0.931 29 H 0.126 0.874 30 H 0.117 0.883 31 H 0.134 0.866 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.103 0.897 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.884 -10.774 -18.181 22.924 hybrid contribution -1.014 0.873 -0.135 1.344 sum 7.870 -9.901 -18.316 22.259 Atomic orbital electron populations 1.69995 1.05860 1.26969 1.49041 1.24935 0.94787 0.98889 0.94396 0.86707 0.79753 0.83101 0.78835 1.19940 1.21325 1.20270 1.20349 0.92916 0.88474 1.50660 0.92039 1.18422 0.98303 0.93949 0.84045 1.23195 0.95201 1.00666 0.98584 1.87197 1.17487 1.80053 1.13748 1.21503 0.95926 1.04294 0.95411 1.24880 0.99836 0.86071 0.96506 1.74656 1.06043 1.21937 1.05615 1.85261 1.45714 1.34861 1.32208 1.28784 0.96571 0.81430 0.97551 1.19893 0.92254 1.02277 0.86606 1.21651 1.00503 0.99590 0.93729 1.21514 0.94750 1.02151 0.97033 1.21596 0.96101 1.00290 0.98105 1.21510 0.99463 1.00072 0.94417 1.21651 0.91727 1.03211 0.99074 1.71922 1.10462 1.30197 1.07260 1.23034 0.98463 0.95832 1.06931 1.22581 0.92222 1.01172 1.02620 0.92985 0.89442 0.93095 0.87408 0.88285 0.86616 0.90731 0.91106 0.91441 0.91316 0.91707 0.91645 0.91411 0.91208 0.90789 0.90714 0.91370 0.90224 0.89695 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.69 12.90 55.43 0.71 -23.98 16 2 C 0.07 2.00 5.39 -17.82 -0.10 1.90 16 3 Si 0.89 21.38 29.55 -169.99 -5.02 16.35 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.49 -13.31 8.49 -34.44 -0.29 -13.61 16 8 H 0.06 1.73 7.82 -52.49 -0.41 1.32 16 9 C 0.05 1.34 1.34 -155.66 -0.21 1.14 16 10 C -0.03 -0.63 5.80 37.16 0.22 -0.41 16 11 S -0.21 -4.47 21.41 -107.50 -2.30 -6.77 16 12 C -0.02 -0.38 6.57 36.01 0.24 -0.15 16 13 C 0.20 3.44 7.48 -156.37 -1.17 2.27 16 14 N -0.38 -6.25 12.16 30.90 0.38 -5.88 16 15 O 0.08 1.13 11.31 18.09 0.20 1.33 16 16 C 0.18 2.31 7.02 -13.05 -0.09 2.22 16 17 C 0.01 0.09 2.66 -91.78 -0.24 -0.16 16 18 C -0.12 -0.79 5.19 -26.73 -0.14 -0.93 16 19 C -0.12 -0.61 5.92 -26.73 -0.16 -0.77 16 20 C -0.12 -0.62 5.92 -26.73 -0.16 -0.78 16 21 C -0.12 -0.68 5.92 -26.75 -0.16 -0.84 16 22 C -0.12 -0.90 5.18 -26.76 -0.14 -1.04 16 23 N -0.47 -7.61 11.55 -9.86 -0.11 -7.72 16 24 C -0.21 -4.54 9.96 -26.69 -0.27 -4.80 16 25 C -0.15 -3.38 9.40 -26.69 -0.25 -3.64 16 26 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 27 H 0.09 2.11 8.14 -51.92 -0.42 1.68 16 28 H 0.05 1.03 8.09 -51.92 -0.42 0.61 16 29 H 0.11 1.78 8.14 -51.92 -0.42 1.35 16 30 H 0.10 1.53 8.14 -51.92 -0.42 1.11 16 31 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 43 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 44 H 0.08 2.09 8.14 -51.93 -0.42 1.66 16 45 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 383.21 15.07 5.77 5.77 Total: -1.00 -30.26 383.21 -10.86 -41.12 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -7.58 Total: -0.65 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: -2.92 Total: -19.58 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.98 Total: -37.58 kcal Atomic # 8 Polarization: 1.13 SS G_CDS: 0.20 Total: 1.33 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -4.47 SS G_CDS: -2.30 Total: -6.77 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.26 -10.86 -41.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596351607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.894 kcal (2) G-P(sol) polarization free energy of solvation -30.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds