Wall clock time and date at job start Tue Mar 31 2020 13:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99864 * 2 1 4 4 H 1.48507 * 109.47200 * 240.00066 * 3 2 1 5 5 H 1.48496 * 109.47603 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47091 * 120.00467 * 3 2 1 7 7 C 1.37876 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00055 * 173.69229 * 7 2 1 9 9 C 1.50701 * 119.99837 * 353.68999 * 7 2 1 10 10 C 1.52996 * 115.54880 * 85.66130 * 9 7 2 11 11 S 1.81396 * 109.47415 * 65.33024 * 10 9 7 12 12 C 1.81399 * 102.99960 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47229 * 180.02562 * 12 11 10 14 14 N 1.29949 * 126.28500 * 89.97381 * 13 12 11 15 15 O 1.21306 * 110.24942 * 180.02562 * 14 13 12 16 16 C 1.33645 * 109.80987 * 359.97438 * 15 14 13 17 17 C 1.50701 * 126.54973 * 179.97438 * 16 15 14 18 18 C 1.52998 * 109.47105 * 60.02625 * 17 16 15 19 19 C 1.52999 * 109.47109 * 180.02562 * 18 17 16 20 20 C 1.52999 * 109.47291 * 60.00099 * 19 18 17 21 21 C 1.53010 * 109.46685 * 299.99919 * 20 19 18 22 22 C 1.52990 * 109.47220 * 300.02529 * 17 16 15 23 23 N 1.31130 * 106.89750 * 0.22736 * 16 15 14 24 24 C 1.53001 * 117.49691 * 231.32756 * 9 7 2 25 25 C 1.52999 * 117.49917 * 299.98678 * 9 7 2 26 26 H 0.96994 * 120.00072 * 354.97012 * 1 2 3 27 27 H 1.09001 * 109.47095 * 305.32434 * 10 9 7 28 28 H 1.09006 * 109.47178 * 185.33179 * 10 9 7 29 29 H 1.08999 * 109.47452 * 60.00351 * 12 11 10 30 30 H 1.09001 * 109.47081 * 299.99534 * 12 11 10 31 31 H 1.08999 * 109.46952 * 180.02562 * 17 16 15 32 32 H 1.09002 * 109.47402 * 299.99766 * 18 17 16 33 33 H 1.09001 * 109.47755 * 59.99867 * 18 17 16 34 34 H 1.08999 * 109.46928 * 299.99608 * 19 18 17 35 35 H 1.09001 * 109.47144 * 180.02562 * 19 18 17 36 36 H 1.08998 * 109.47344 * 180.02562 * 20 19 18 37 37 H 1.08993 * 109.47188 * 59.99667 * 20 19 18 38 38 H 1.08999 * 109.47103 * 300.00227 * 21 20 19 39 39 H 1.09004 * 109.46756 * 179.97438 * 21 20 19 40 40 H 1.09001 * 109.47252 * 300.00162 * 22 17 16 41 41 H 1.08999 * 109.47390 * 59.99984 * 22 17 16 42 42 H 1.08999 * 117.50075 * 215.00180 * 24 9 7 43 43 H 1.08999 * 117.50170 * 0.02562 * 24 9 7 44 44 H 1.09000 * 117.50021 * 359.97438 * 25 9 7 45 45 H 1.09000 * 117.49886 * 144.97273 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0797 -1.1968 -0.1033 9 6 1.2579 -2.4952 0.1423 10 6 0.7098 -3.0876 -1.1575 11 16 2.0896 -3.5543 -2.2385 12 6 1.2530 -4.2251 -3.7015 13 6 2.2818 -4.6653 -4.7109 14 7 2.8206 -5.8449 -4.7955 15 8 3.6125 -5.8798 -5.7138 16 6 3.6549 -4.6900 -6.3208 17 6 4.5100 -4.3161 -7.5041 18 6 4.1619 -5.2179 -8.6901 19 6 5.0305 -4.8388 -9.8912 20 6 6.5064 -5.0181 -9.5302 21 6 6.8545 -4.1162 -8.3442 22 6 5.9860 -4.4949 -7.1435 23 7 2.8144 -3.9084 -5.6867 24 6 1.7409 -3.4727 1.2157 25 6 0.4341 -2.7010 1.4151 26 1 -0.4850 0.8368 0.0736 27 1 0.0884 -2.3469 -1.6607 28 1 0.1113 -3.9700 -0.9306 29 1 0.6178 -3.4562 -4.1414 30 1 0.6413 -5.0792 -3.4107 31 1 4.3248 -3.2759 -7.7720 32 1 4.3471 -6.2582 -8.4222 33 1 3.1103 -5.0906 -8.9471 34 1 4.8457 -3.7986 -10.1593 35 1 4.7822 -5.4810 -10.7363 36 1 7.1252 -4.7476 -10.3858 37 1 6.6911 -6.0583 -9.2621 38 1 6.6697 -3.0760 -8.6123 39 1 7.9059 -4.2443 -8.0867 40 1 6.2340 -3.8525 -6.2986 41 1 6.1712 -5.5351 -6.8756 42 1 1.6682 -4.5378 0.9959 43 1 2.5985 -3.1745 1.8188 44 1 0.4325 -1.8954 2.1493 45 1 -0.4986 -3.2580 1.3264 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596351607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:23 Heat of formation + Delta-G solvation = 48.639499 kcal Electronic energy + Delta-G solvation = -24163.510645 eV Core-core repulsion = 20695.571000 eV Total energy + Delta-G solvation = -3467.939645 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -46.78988 -39.57278 -38.45245 -37.24459 -34.63022 -34.00975 -31.70548 -31.60764 -30.38724 -29.37787 -27.37856 -25.37450 -24.50763 -23.53916 -22.94544 -22.21629 -21.14937 -20.54046 -19.30179 -18.70170 -18.14489 -17.05371 -16.89875 -16.63324 -15.96008 -15.78725 -15.51858 -15.15384 -15.13056 -14.98611 -14.86107 -14.44498 -13.79872 -13.73252 -13.60863 -13.48089 -13.35617 -13.14295 -13.03941 -12.81989 -12.65316 -12.37216 -12.33339 -12.10572 -12.05401 -12.02169 -11.58171 -11.47397 -11.39536 -11.23845 -11.03473 -10.78996 -10.69037 -10.46285 -9.89680 -8.56242 -8.12699 -6.22808 -0.12044 0.44873 1.39339 1.40797 1.42100 1.48964 1.72995 1.75011 2.40068 2.43016 2.80525 3.16104 3.51571 3.59542 3.69997 3.71950 3.99173 4.05957 4.15798 4.26649 4.29734 4.32258 4.38477 4.41716 4.52179 4.54725 4.57470 4.58779 4.65694 4.70962 4.83997 4.90637 4.98514 5.02102 5.10956 5.15135 5.21632 5.25782 5.26478 5.39520 5.41409 5.55354 5.59447 5.61316 5.75884 6.36499 6.80535 7.03456 7.45348 8.95433 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016897 B = 0.002705 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.715043 B =10348.356192 C =11316.815462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.032 3.968 3 Si 0.941 3.059 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.500 4.500 8 H 0.044 0.956 9 C 0.026 3.974 10 C -0.015 4.015 11 S -0.249 6.249 12 C -0.007 4.007 13 C 0.183 3.817 14 N -0.387 5.387 15 O 0.087 5.913 16 C 0.196 3.804 17 C 0.011 3.989 18 C -0.112 4.112 19 C -0.113 4.113 20 C -0.122 4.122 21 C -0.114 4.114 22 C -0.116 4.116 23 N -0.497 5.497 24 C -0.185 4.185 25 C -0.145 4.145 26 H 0.261 0.739 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.058 0.942 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.259 -11.570 -20.523 25.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.169 4.169 3 Si 0.767 3.233 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.538 4.538 8 H 0.062 0.938 9 C 0.024 3.976 10 C -0.163 4.163 11 S -0.022 6.022 12 C -0.156 4.156 13 C -0.090 4.090 14 N -0.095 5.095 15 O 0.026 5.974 16 C -0.025 4.025 17 C -0.010 4.010 18 C -0.151 4.151 19 C -0.151 4.151 20 C -0.159 4.159 21 C -0.151 4.151 22 C -0.155 4.155 23 N -0.230 5.230 24 C -0.222 4.222 25 C -0.185 4.185 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.131 0.869 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.109 0.891 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.722 -11.617 -19.791 24.922 hybrid contribution -1.198 1.083 0.275 1.638 sum 8.524 -10.535 -19.516 23.759 Atomic orbital electron populations 1.70070 1.06713 1.27508 1.49813 1.25531 0.95536 1.01466 0.94322 0.85879 0.78735 0.80028 0.78649 1.20191 1.20660 1.19813 1.20519 0.92358 0.90281 1.50634 0.93781 1.18523 0.99499 0.94032 0.85509 1.22910 0.95117 1.00669 0.97605 1.87201 1.18450 1.80530 1.16054 1.21436 0.95758 1.04909 0.93450 1.24878 1.00476 0.86555 0.97082 1.74628 1.06469 1.21974 1.06397 1.85231 1.45090 1.35260 1.31805 1.29612 0.95304 0.80309 0.97241 1.20222 0.92148 1.02939 0.85663 1.21659 1.00808 0.99213 0.93381 1.21513 0.94476 1.02632 0.96453 1.21599 0.96075 1.00200 0.98036 1.21504 0.99342 1.00433 0.93832 1.21659 0.91165 1.03080 0.99588 1.71917 1.11957 1.31115 1.08048 1.23012 0.97618 0.96581 1.05012 1.22518 0.93497 1.01046 1.01431 0.93016 0.91898 0.90901 0.86950 0.86304 0.86249 0.90433 0.91344 0.91125 0.90094 0.90536 0.91408 0.91184 0.90512 0.92304 0.90477 0.89095 0.90579 0.91711 0.90056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.03 12.90 21.45 0.28 -50.75 16 2 C 0.03 1.77 5.39 84.65 0.46 2.23 16 3 Si 0.94 44.21 29.55 68.60 2.03 46.24 16 4 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 6 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.50 -27.74 8.49 25.60 0.22 -27.52 16 8 H 0.04 2.53 7.82 -2.91 -0.02 2.51 16 9 C 0.03 1.28 1.34 -52.93 -0.07 1.21 16 10 C -0.01 -0.65 5.80 71.98 0.42 -0.23 16 11 S -0.25 -10.50 21.41 -56.49 -1.21 -11.71 16 12 C -0.01 -0.22 6.57 71.24 0.47 0.25 16 13 C 0.18 6.21 7.48 138.46 1.04 7.25 16 14 N -0.39 -12.64 12.16 -60.29 -0.73 -13.37 16 15 O 0.09 2.41 11.31 74.81 0.85 3.25 16 16 C 0.20 4.94 7.02 88.38 0.62 5.56 16 17 C 0.01 0.17 2.66 -11.54 -0.03 0.14 16 18 C -0.11 -1.30 5.19 30.59 0.16 -1.15 16 19 C -0.11 -0.89 5.92 30.59 0.18 -0.71 16 20 C -0.12 -0.90 5.92 30.60 0.18 -0.72 16 21 C -0.11 -1.09 5.92 30.58 0.18 -0.90 16 22 C -0.12 -1.63 5.18 30.57 0.16 -1.48 16 23 N -0.50 -16.11 11.55 -303.17 -3.50 -19.61 16 24 C -0.18 -7.99 9.96 30.62 0.30 -7.69 16 25 C -0.15 -6.66 9.40 30.62 0.29 -6.37 16 26 H 0.26 14.14 8.32 -92.71 -0.77 13.37 16 27 H 0.06 3.07 8.14 -2.39 -0.02 3.05 16 28 H 0.07 2.86 8.09 -2.39 -0.02 2.84 16 29 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 30 H 0.12 3.52 8.14 -2.39 -0.02 3.50 16 31 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 34 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.08 0.65 8.14 -2.38 -0.02 0.64 16 40 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 43 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 44 H 0.06 3.20 8.14 -2.39 -0.02 3.18 16 45 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -64.62 383.21 3.23 -61.39 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.96 Total: 14.71 kcal Atomic # 6 Polarization: -34.71 SS G_CDS: 4.57 Total: -30.14 kcal Atomic # 7 Polarization: -79.77 SS G_CDS: -3.96 Total: -83.73 kcal Atomic # 8 Polarization: 2.41 SS G_CDS: 0.85 Total: 3.25 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: -10.50 SS G_CDS: -1.21 Total: -11.71 kcal Total: -64.62 3.23 -61.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596351607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.027 kcal (2) G-P(sol) polarization free energy of solvation -64.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds