Wall clock time and date at job start Tue Mar 31 2020 13:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00312 * 2 1 4 4 H 1.48502 * 109.46793 * 269.99964 * 3 2 1 5 5 H 1.48506 * 109.47179 * 29.99511 * 3 2 1 6 6 H 1.48493 * 109.47566 * 149.99577 * 3 2 1 7 7 C 1.37880 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00393 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99876 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.49616 * 299.93439 * 9 7 2 11 11 C 1.53044 * 109.52477 * 179.85327 * 9 7 2 12 12 C 1.53037 * 109.53691 * 178.66769 * 11 9 7 13 13 C 1.52759 * 109.38677 * 61.24271 * 12 11 9 14 14 N 1.46934 * 109.00425 * 305.58736 * 13 12 11 15 15 C 1.34781 * 120.62805 * 233.58392 * 14 13 12 16 16 O 1.21587 * 119.99838 * 184.74440 * 15 14 13 17 17 N 1.34778 * 120.00032 * 4.74422 * 15 14 13 18 18 C 1.46497 * 119.99862 * 174.92368 * 17 15 14 19 19 C 1.50707 * 109.46779 * 179.97438 * 18 17 15 20 20 C 1.38262 * 119.93736 * 270.01736 * 19 18 17 21 21 C 1.38182 * 120.09466 * 179.72576 * 20 19 18 22 22 C 1.38664 * 119.96853 * 0.53152 * 21 20 19 23 23 O 1.35955 * 120.06394 * 179.74779 * 22 21 20 24 24 C 1.38909 * 119.87083 * 359.47435 * 22 21 20 25 25 F 1.35105 * 120.04561 * 180.27397 * 24 22 21 26 26 C 1.38256 * 119.93656 * 90.00407 * 19 18 17 27 27 C 1.46922 * 118.73923 * 53.30892 * 14 13 12 28 28 H 0.97004 * 120.00186 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.45490 * 298.68824 * 11 9 7 30 30 H 1.09003 * 109.45405 * 58.64499 * 11 9 7 31 31 H 1.08997 * 109.49413 * 181.32108 * 12 11 9 32 32 H 1.08995 * 109.49636 * 301.37723 * 12 11 9 33 33 H 1.08991 * 109.51237 * 185.70546 * 13 12 11 34 34 H 1.08993 * 109.43263 * 65.41932 * 13 12 11 35 35 H 0.97000 * 119.99885 * 354.91901 * 17 15 14 36 36 H 1.08990 * 109.47219 * 60.00152 * 18 17 15 37 37 H 1.08996 * 109.47037 * 299.99618 * 18 17 15 38 38 H 1.08001 * 119.95364 * 359.97438 * 20 19 18 39 39 H 1.08000 * 120.01651 * 180.25995 * 21 20 19 40 40 H 0.96700 * 113.99537 * 269.72512 * 23 22 21 41 41 H 1.08002 * 119.98824 * 0.02562 * 26 19 18 42 42 H 1.08999 * 109.59011 * 66.43255 * 27 14 13 43 43 H 1.09009 * 109.58557 * 186.71454 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0462 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6247 -2.5576 0.8907 11 6 2.2443 -3.6634 -0.0025 12 6 1.4797 -4.9887 0.0310 13 6 0.6014 -5.0990 -1.2139 14 7 -0.2563 -3.9091 -1.3013 15 6 -1.5931 -4.0334 -1.4202 16 8 -2.2838 -3.0454 -1.5783 17 7 -2.1641 -5.2530 -1.3640 18 6 -3.6235 -5.3799 -1.3814 19 6 -4.0017 -6.8370 -1.3097 20 6 -4.1548 -7.5682 -2.4731 21 6 -4.4960 -8.9058 -2.4110 22 6 -4.6961 -9.5132 -1.1807 23 8 -5.0370 -10.8278 -1.1175 24 6 -4.5421 -8.7773 -0.0126 25 9 -4.7309 -9.3669 1.1882 26 6 -4.1948 -7.4400 -0.0806 27 6 0.3704 -2.5812 -1.2504 28 1 -0.4850 0.8401 -0.0004 29 1 2.8536 -3.6184 -0.9052 30 1 2.8884 -3.5934 0.8741 31 1 2.1881 -5.8168 0.0525 32 1 0.8518 -5.0239 0.9212 33 1 -0.0191 -5.9922 -1.1437 34 1 1.2337 -5.1594 -2.0996 35 1 -1.6088 -6.0466 -1.3120 36 1 -4.0147 -4.9483 -2.3025 37 1 -4.0443 -4.8524 -0.5254 38 1 -4.0034 -7.0942 -3.4317 39 1 -4.6111 -9.4768 -3.3205 40 1 -5.9906 -10.9876 -1.1254 41 1 -4.0749 -6.8667 0.8268 42 1 0.9835 -2.4322 -2.1392 43 1 -0.4025 -1.8138 -1.2067 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596354536.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:00 Heat of formation + Delta-G solvation = -90.412965 kcal Electronic energy + Delta-G solvation = -26882.986023 eV Core-core repulsion = 22842.803435 eV Total energy + Delta-G solvation = -4040.182588 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.17462 -40.19618 -39.54531 -37.61152 -36.75582 -34.38808 -33.28936 -31.80204 -31.13601 -30.46691 -29.63215 -26.21028 -25.03692 -24.01560 -23.34321 -21.98090 -21.75371 -20.11930 -19.03344 -18.89839 -17.79898 -17.15742 -16.95945 -16.39436 -16.17081 -15.74900 -15.46162 -14.98324 -14.66186 -14.41753 -14.29025 -13.98191 -13.76876 -13.67054 -13.51903 -13.14678 -12.71014 -12.58183 -12.40994 -12.29802 -11.96596 -11.85156 -11.83761 -11.01415 -10.98367 -10.88447 -10.50277 -10.38995 -10.22095 -9.87211 -9.55645 -9.32713 -9.09427 -8.99764 -8.89031 -8.79318 -8.41097 -7.64288 -5.97329 -4.06136 0.55698 0.74963 2.87809 3.31773 3.38966 3.40214 3.42355 3.56915 3.83256 3.92425 4.28716 4.39568 4.40935 4.47850 4.77613 4.86724 5.27718 5.28368 5.32814 5.33017 5.51180 5.55049 5.60620 5.66522 5.72570 5.76601 5.98808 6.14140 6.16743 6.30338 6.32383 6.59286 6.66673 6.73323 6.81568 6.99524 7.06701 7.12221 7.34775 7.49557 7.75603 7.93980 8.07378 8.42282 8.57007 8.97360 9.23042 9.59324 11.07819 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024452 B = 0.002585 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.843415 B =10829.317626 C =11158.357707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.039 3.961 10 H 0.028 0.972 11 C -0.110 4.110 12 C -0.134 4.134 13 C 0.116 3.884 14 N -0.621 5.621 15 C 0.702 3.298 16 O -0.583 6.583 17 N -0.755 5.755 18 C 0.180 3.820 19 C -0.080 4.080 20 C -0.094 4.094 21 C -0.119 4.119 22 C 0.075 3.925 23 O -0.489 6.489 24 C 0.072 3.928 25 F -0.132 7.132 26 C -0.120 4.120 27 C 0.129 3.871 28 H 0.263 0.737 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.392 0.608 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.392 0.608 41 H 0.144 0.856 42 H 0.039 0.961 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.638 -20.060 -4.361 22.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.076 0.924 9 C 0.020 3.980 10 H 0.046 0.954 11 C -0.147 4.147 12 C -0.172 4.172 13 C -0.009 4.009 14 N -0.358 5.358 15 C 0.403 3.597 16 O -0.460 6.460 17 N -0.415 5.415 18 C 0.056 3.944 19 C -0.080 4.080 20 C -0.113 4.113 21 C -0.137 4.137 22 C 0.030 3.970 23 O -0.299 6.299 24 C 0.052 3.948 25 F -0.111 7.111 26 C -0.139 4.139 27 C 0.009 3.991 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.228 0.772 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.156 0.844 39 H 0.158 0.842 40 H 0.249 0.751 41 H 0.162 0.838 42 H 0.057 0.943 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.706 -19.263 -4.402 22.015 hybrid contribution 0.200 0.273 0.309 0.458 sum -9.506 -18.990 -4.094 21.628 Atomic orbital electron populations 1.69892 1.05709 1.26806 1.49273 1.25056 0.94882 0.99239 0.94871 0.86596 0.79784 0.83528 0.78102 1.20645 1.21233 1.19975 1.21073 0.92883 0.90125 1.51874 0.92387 1.18991 0.92626 0.92204 0.94178 0.95367 1.21613 0.98540 0.94050 1.00539 1.21874 0.98625 0.99180 0.97562 1.21407 0.93368 0.87464 0.98613 1.47792 1.03464 1.08909 1.75600 1.15917 0.82556 0.82921 0.78286 1.90926 1.61725 1.36541 1.56814 1.45340 1.06124 1.07703 1.82358 1.19926 0.81055 0.89906 1.03541 1.19894 0.99514 0.96367 0.92249 1.21131 0.98156 0.93198 0.98780 1.21339 1.00608 0.94905 0.96863 1.18492 1.03105 0.84114 0.91336 1.84880 1.29278 1.19668 1.96087 1.18093 1.04547 0.91607 0.80509 1.91515 1.92772 1.84035 1.42769 1.21131 1.00506 0.92678 0.99608 1.22194 0.98321 0.80453 0.98153 0.92665 0.93184 0.93063 0.92312 0.92209 0.92211 0.92118 0.77179 0.90386 0.90610 0.84362 0.84160 0.75141 0.83799 0.94268 0.85941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.69 11.39 55.43 0.63 -25.06 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.10 8.57 -34.44 -0.29 -14.39 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.04 0.97 2.25 -91.65 -0.21 0.76 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.11 -2.17 5.11 -26.69 -0.14 -2.31 16 12 C -0.13 -2.14 6.06 -26.84 -0.16 -2.30 16 13 C 0.12 1.77 6.40 -3.93 -0.03 1.75 16 14 N -0.62 -12.41 2.98 -178.76 -0.53 -12.94 16 15 C 0.70 14.03 8.30 -86.91 -0.72 13.31 16 16 O -0.58 -14.31 15.78 5.29 0.08 -14.23 16 17 N -0.75 -10.87 5.46 -66.42 -0.36 -11.24 16 18 C 0.18 2.18 5.80 -5.19 -0.03 2.15 16 19 C -0.08 -0.75 5.25 -104.60 -0.55 -1.30 16 20 C -0.09 -0.75 9.69 -39.59 -0.38 -1.13 16 21 C -0.12 -0.89 9.99 -39.44 -0.39 -1.28 16 22 C 0.08 0.67 6.71 -39.18 -0.26 0.41 16 23 O -0.49 -3.94 13.37 -19.60 -0.26 -4.20 16 24 C 0.07 0.73 7.31 -39.30 -0.29 0.44 16 25 F -0.13 -1.51 17.11 2.25 0.04 -1.47 16 26 C -0.12 -1.17 9.67 -39.54 -0.38 -1.55 16 27 C 0.13 3.14 5.39 -3.71 -0.02 3.12 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.73 5.57 -51.93 -0.29 0.44 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.39 4.76 5.92 -40.82 -0.24 4.52 16 36 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 37 H 0.08 0.99 8.08 -51.93 -0.42 0.57 16 38 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.39 1.24 9.06 45.56 0.41 1.65 16 41 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 42 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.12 3.49 5.15 -51.92 -0.27 3.23 16 LS Contribution 357.85 15.07 5.39 5.39 Total: -1.00 -33.63 357.85 -8.98 -42.61 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -4.99 Total: 5.55 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -3.95 Total: -0.68 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.26 Total: -49.23 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.18 Total: -18.43 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.63 -8.98 -42.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596354536.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.802 kcal (2) G-P(sol) polarization free energy of solvation -33.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds