Wall clock time and date at job start Tue Mar 31 2020 13:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00312 * 2 1 4 4 H 1.48502 * 109.46793 * 269.99964 * 3 2 1 5 5 H 1.48506 * 109.47179 * 29.99511 * 3 2 1 6 6 H 1.48493 * 109.47566 * 149.99577 * 3 2 1 7 7 C 1.37880 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00393 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99876 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.49616 * 299.93439 * 9 7 2 11 11 C 1.53044 * 109.52477 * 179.85327 * 9 7 2 12 12 C 1.53037 * 109.53691 * 178.66769 * 11 9 7 13 13 C 1.52759 * 109.38677 * 61.24271 * 12 11 9 14 14 N 1.46934 * 109.00425 * 305.58736 * 13 12 11 15 15 C 1.34781 * 120.62805 * 233.58392 * 14 13 12 16 16 O 1.21587 * 119.99838 * 184.74440 * 15 14 13 17 17 N 1.34778 * 120.00032 * 4.74422 * 15 14 13 18 18 C 1.46497 * 119.99862 * 174.92368 * 17 15 14 19 19 C 1.50707 * 109.46779 * 179.97438 * 18 17 15 20 20 C 1.38262 * 119.93736 * 270.01736 * 19 18 17 21 21 C 1.38182 * 120.09466 * 179.72576 * 20 19 18 22 22 C 1.38664 * 119.96853 * 0.53152 * 21 20 19 23 23 O 1.35955 * 120.06394 * 179.74779 * 22 21 20 24 24 C 1.38909 * 119.87083 * 359.47435 * 22 21 20 25 25 F 1.35105 * 120.04561 * 180.27397 * 24 22 21 26 26 C 1.38256 * 119.93656 * 90.00407 * 19 18 17 27 27 C 1.46922 * 118.73923 * 53.30892 * 14 13 12 28 28 H 0.97004 * 120.00186 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.45490 * 298.68824 * 11 9 7 30 30 H 1.09003 * 109.45405 * 58.64499 * 11 9 7 31 31 H 1.08997 * 109.49413 * 181.32108 * 12 11 9 32 32 H 1.08995 * 109.49636 * 301.37723 * 12 11 9 33 33 H 1.08991 * 109.51237 * 185.70546 * 13 12 11 34 34 H 1.08993 * 109.43263 * 65.41932 * 13 12 11 35 35 H 0.97000 * 119.99885 * 354.91901 * 17 15 14 36 36 H 1.08990 * 109.47219 * 60.00152 * 18 17 15 37 37 H 1.08996 * 109.47037 * 299.99618 * 18 17 15 38 38 H 1.08001 * 119.95364 * 359.97438 * 20 19 18 39 39 H 1.08000 * 120.01651 * 180.25995 * 21 20 19 40 40 H 0.96700 * 113.99537 * 269.72512 * 23 22 21 41 41 H 1.08002 * 119.98824 * 0.02562 * 26 19 18 42 42 H 1.08999 * 109.59011 * 66.43255 * 27 14 13 43 43 H 1.09009 * 109.58557 * 186.71454 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0462 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6247 -2.5576 0.8907 11 6 2.2443 -3.6634 -0.0025 12 6 1.4797 -4.9887 0.0310 13 6 0.6014 -5.0990 -1.2139 14 7 -0.2563 -3.9091 -1.3013 15 6 -1.5931 -4.0334 -1.4202 16 8 -2.2838 -3.0454 -1.5783 17 7 -2.1641 -5.2530 -1.3640 18 6 -3.6235 -5.3799 -1.3814 19 6 -4.0017 -6.8370 -1.3097 20 6 -4.1548 -7.5682 -2.4731 21 6 -4.4960 -8.9058 -2.4110 22 6 -4.6961 -9.5132 -1.1807 23 8 -5.0370 -10.8278 -1.1175 24 6 -4.5421 -8.7773 -0.0126 25 9 -4.7309 -9.3669 1.1882 26 6 -4.1948 -7.4400 -0.0806 27 6 0.3704 -2.5812 -1.2504 28 1 -0.4850 0.8401 -0.0004 29 1 2.8536 -3.6184 -0.9052 30 1 2.8884 -3.5934 0.8741 31 1 2.1881 -5.8168 0.0525 32 1 0.8518 -5.0239 0.9212 33 1 -0.0191 -5.9922 -1.1437 34 1 1.2337 -5.1594 -2.0996 35 1 -1.6088 -6.0466 -1.3120 36 1 -4.0147 -4.9483 -2.3025 37 1 -4.0443 -4.8524 -0.5254 38 1 -4.0034 -7.0942 -3.4317 39 1 -4.6111 -9.4768 -3.3205 40 1 -5.9906 -10.9876 -1.1254 41 1 -4.0749 -6.8667 0.8268 42 1 0.9835 -2.4322 -2.1392 43 1 -0.4025 -1.8138 -1.2067 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596354536.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:59 Heat of formation + Delta-G solvation = -113.879159 kcal Electronic energy + Delta-G solvation = -26884.003593 eV Core-core repulsion = 22842.803435 eV Total energy + Delta-G solvation = -4041.200159 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.96238 -41.38037 -40.57904 -38.65836 -38.02551 -35.74752 -35.09467 -33.44313 -31.89323 -31.62964 -31.09926 -27.42822 -26.82681 -25.47964 -24.02168 -23.44584 -22.72342 -21.71718 -20.43043 -19.64753 -19.21714 -18.31942 -17.90809 -17.75097 -17.26754 -16.98905 -16.58024 -16.38798 -16.15038 -15.55589 -15.22114 -15.18693 -15.00785 -14.96447 -14.68276 -14.41161 -14.23015 -14.13068 -13.66596 -13.53175 -13.04483 -13.01757 -12.87335 -12.67591 -12.61927 -12.27348 -12.21646 -11.84468 -11.64326 -11.62238 -11.23655 -10.94795 -10.83012 -10.50332 -10.18395 -10.01836 -9.66500 -9.24754 -8.08666 -6.25638 -0.13956 0.07892 1.42095 1.42443 1.53305 1.78250 2.26658 2.41342 2.44985 2.90558 3.11570 3.22113 3.26454 3.51244 3.73485 4.04903 4.13266 4.15315 4.17701 4.28723 4.43216 4.61364 4.62568 4.74129 4.76637 4.82179 4.87608 4.90921 4.98887 5.11343 5.12001 5.27483 5.28952 5.34006 5.40861 5.49135 5.58381 5.65495 5.67472 5.90884 5.99064 6.17764 6.37985 6.68785 6.87313 7.13290 7.44158 7.68581 8.94639 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024452 B = 0.002585 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.843415 B =10829.317626 C =11158.357707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.009 3.991 3 Si 0.957 3.043 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.535 4.535 8 H 0.062 0.938 9 C 0.038 3.962 10 H -0.015 1.015 11 C -0.105 4.105 12 C -0.127 4.127 13 C 0.111 3.889 14 N -0.627 5.627 15 C 0.695 3.305 16 O -0.638 6.638 17 N -0.731 5.731 18 C 0.181 3.819 19 C -0.084 4.084 20 C -0.082 4.082 21 C -0.110 4.110 22 C 0.082 3.918 23 O -0.500 6.500 24 C 0.050 3.950 25 F -0.145 7.145 26 C -0.122 4.122 27 C 0.144 3.856 28 H 0.259 0.741 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.103 0.897 32 H 0.048 0.952 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.407 0.593 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.157 0.843 39 H 0.168 0.832 40 H 0.414 0.586 41 H 0.139 0.861 42 H 0.034 0.966 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.733 -22.775 -5.641 25.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.190 4.190 3 Si 0.783 3.217 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.574 4.574 8 H 0.080 0.920 9 C 0.019 3.981 10 H 0.003 0.997 11 C -0.142 4.142 12 C -0.165 4.165 13 C -0.011 4.011 14 N -0.363 5.363 15 C 0.397 3.603 16 O -0.519 6.519 17 N -0.391 5.391 18 C 0.058 3.942 19 C -0.084 4.084 20 C -0.101 4.101 21 C -0.129 4.129 22 C 0.036 3.964 23 O -0.314 6.314 24 C 0.030 3.970 25 F -0.124 7.124 26 C -0.141 4.141 27 C 0.021 3.979 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.121 0.879 32 H 0.067 0.933 33 H 0.116 0.884 34 H 0.099 0.901 35 H 0.246 0.754 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.175 0.825 39 H 0.186 0.814 40 H 0.274 0.726 41 H 0.157 0.843 42 H 0.052 0.948 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.796 -22.069 -5.675 24.425 hybrid contribution -0.137 1.018 0.707 1.247 sum -8.933 -21.050 -4.968 23.401 Atomic orbital electron populations 1.70093 1.07394 1.27213 1.50608 1.25897 0.95563 1.02913 0.94654 0.85566 0.78716 0.79154 0.78292 1.19996 1.21398 1.18760 1.21518 0.93277 0.91508 1.51093 0.91988 1.18921 0.93101 0.93740 0.92377 0.99652 1.21502 0.97652 0.94177 1.00906 1.21835 0.99000 0.98259 0.97376 1.21755 0.93569 0.86634 0.99191 1.47678 1.04136 1.08890 1.75566 1.16150 0.82365 0.83780 0.78011 1.90886 1.62982 1.38870 1.59162 1.45120 1.07293 1.06149 1.80570 1.19960 0.79355 0.91911 1.02994 1.19565 1.01229 0.94716 0.92922 1.21325 0.96627 0.93338 0.98776 1.21571 0.99398 0.94656 0.97238 1.18633 1.02159 0.84280 0.91298 1.84819 1.31423 1.19091 1.96039 1.18281 1.06118 0.91923 0.80641 1.91478 1.93076 1.84206 1.43620 1.21094 1.00631 0.92748 0.99668 1.21572 0.96780 0.81940 0.97581 0.93167 0.92347 0.93100 0.87857 0.93284 0.88417 0.90143 0.75447 0.90278 0.92088 0.82532 0.81442 0.72635 0.84292 0.94815 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.06 11.39 21.45 0.24 -55.81 16 2 C 0.01 0.52 5.30 84.66 0.45 0.97 16 3 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 7 C -0.54 -29.63 8.57 25.60 0.22 -29.41 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.04 1.93 2.25 -11.46 -0.03 1.90 16 10 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 11 C -0.10 -4.02 5.11 30.62 0.16 -3.87 16 12 C -0.13 -3.69 6.06 30.53 0.19 -3.50 16 13 C 0.11 3.08 6.40 86.22 0.55 3.63 16 14 N -0.63 -25.03 2.98 -837.74 -2.50 -27.53 16 15 C 0.70 28.19 8.30 179.05 1.49 29.68 16 16 O -0.64 -32.82 15.78 -3.99 -0.06 -32.89 16 17 N -0.73 -20.31 5.46 -482.30 -2.63 -22.95 16 18 C 0.18 4.31 5.80 85.64 0.50 4.81 16 19 C -0.08 -1.45 5.25 -19.85 -0.10 -1.55 16 20 C -0.08 -1.05 9.69 22.26 0.22 -0.83 16 21 C -0.11 -1.25 9.99 22.36 0.22 -1.03 16 22 C 0.08 1.25 6.71 22.53 0.15 1.40 16 23 O -0.50 -6.72 13.37 -93.04 -1.24 -7.96 16 24 C 0.05 0.95 7.31 22.45 0.16 1.11 16 25 F -0.15 -3.23 17.11 44.97 0.77 -2.46 16 26 C -0.12 -2.27 9.67 22.30 0.22 -2.05 16 27 C 0.14 7.25 5.39 86.36 0.47 7.72 16 28 H 0.26 15.33 8.31 -92.71 -0.77 14.55 16 29 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.10 1.98 5.57 -2.39 -0.01 1.97 16 34 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.41 8.78 5.92 -92.71 -0.55 8.23 16 36 H 0.08 1.89 8.08 -2.39 -0.02 1.87 16 37 H 0.06 1.64 8.08 -2.39 -0.02 1.62 16 38 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 39 H 0.17 1.03 8.06 -2.91 -0.02 1.00 16 40 H 0.41 1.51 9.06 -74.06 -0.67 0.84 16 41 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 42 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.08 4.58 5.15 -2.38 -0.01 4.57 16 Total: -1.00 -78.21 357.85 1.29 -76.92 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -0.16 Total: 17.15 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 4.85 Total: 8.96 kcal Atomic # 7 Polarization: -101.40 SS G_CDS: -4.88 Total: -106.29 kcal Atomic # 8 Polarization: -39.54 SS G_CDS: -1.31 Total: -40.85 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.77 Total: -2.46 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -78.21 1.29 -76.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596354536.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.955 kcal (2) G-P(sol) polarization free energy of solvation -78.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds