Wall clock time and date at job start Tue Mar 31 2020 13:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00120 * 2 1 4 4 H 1.48495 * 109.47380 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47124 * 300.00094 * 3 2 1 6 6 H 1.48506 * 109.47133 * 59.99826 * 3 2 1 7 7 C 1.37878 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99790 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99772 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47141 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47212 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.46908 * 179.97438 * 11 10 9 13 13 C 1.34779 * 119.99880 * 179.97438 * 12 11 10 14 14 O 1.21581 * 119.99871 * 355.04377 * 13 12 11 15 15 N 1.34781 * 120.00024 * 175.04682 * 13 12 11 16 16 C 1.46361 * 119.72746 * 184.98272 * 15 13 12 17 17 C 1.52691 * 110.90418 * 116.00386 * 16 15 13 18 18 O 1.43294 * 110.02537 * 61.12964 * 17 16 15 19 19 C 1.35420 * 115.74538 * 270.85224 * 18 17 16 20 20 C 1.38901 * 120.10463 * 252.53181 * 19 18 17 21 21 C 1.38312 * 119.89291 * 176.60139 * 20 19 18 22 22 F 1.35099 * 119.82218 * 180.09513 * 21 20 19 23 23 C 1.38521 * 120.34549 * 0.11860 * 21 20 19 24 24 C 1.38416 * 119.88054 * 0.90626 * 23 21 20 25 25 C 1.37614 * 119.69715 * 359.77119 * 24 23 21 26 26 C 1.46622 * 119.72857 * 5.24235 * 15 13 12 27 27 H 0.97007 * 120.00025 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46932 * 59.99758 * 9 7 2 29 29 H 1.08997 * 109.47025 * 299.99872 * 9 7 2 30 30 H 1.08999 * 109.47243 * 59.99286 * 10 9 7 31 31 H 1.09007 * 109.46999 * 299.99819 * 10 9 7 32 32 H 1.08997 * 109.47123 * 299.99912 * 11 10 9 33 33 H 1.09002 * 109.47216 * 60.00038 * 11 10 9 34 34 H 0.97003 * 120.00624 * 0.02562 * 12 11 10 35 35 H 1.09002 * 109.12947 * 236.45254 * 16 15 13 36 36 H 1.08998 * 109.13815 * 355.56794 * 16 15 13 37 37 H 1.08990 * 109.49158 * 300.90110 * 17 16 15 38 38 H 1.09001 * 109.19875 * 181.17760 * 17 16 15 39 39 H 1.07994 * 120.05169 * 356.62326 * 20 19 18 40 40 H 1.08001 * 120.05726 * 180.92351 * 23 21 20 41 41 H 1.08003 * 120.15236 * 179.77113 * 24 23 21 42 42 H 1.08995 * 109.58707 * 20.50203 * 26 15 13 43 43 H 1.09007 * 109.58141 * 140.92468 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4801 -4.9871 -0.0020 12 7 2.4321 -6.1006 -0.0024 13 6 1.9829 -7.3713 -0.0024 14 8 0.7912 -7.5947 0.0889 15 7 2.8546 -8.3943 -0.1035 16 6 2.3548 -9.7655 -0.2130 17 6 2.7365 -10.3787 -1.5583 18 8 4.1627 -10.4268 -1.6886 19 6 4.7410 -9.3302 -2.2336 20 6 5.2519 -9.3807 -3.5242 21 6 5.7779 -8.2397 -4.1025 22 9 6.2727 -8.2899 -5.3586 23 6 5.8005 -7.0459 -3.4002 24 6 5.3115 -6.9977 -2.1062 25 6 4.8011 -8.1371 -1.5274 26 6 4.2958 -8.1247 -0.0971 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5562 -0.8920 29 1 0.6240 -2.5575 0.8880 30 1 2.8712 -3.6047 0.8890 31 1 2.8725 -3.6040 -0.8910 32 1 0.8531 -5.0450 0.8877 33 1 0.8538 -5.0447 -0.8923 34 1 3.3858 -5.9234 -0.0019 35 1 2.7809 -10.3663 0.5904 36 1 1.2692 -9.7590 -0.1157 37 1 2.3201 -9.7749 -2.3645 38 1 2.3337 -11.3897 -1.6187 39 1 5.2380 -10.3093 -4.0754 40 1 6.1987 -6.1543 -3.8616 41 1 5.3303 -6.0701 -1.5533 42 1 4.4828 -7.1477 0.3482 43 1 4.8090 -8.8952 0.4784 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598983127.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:27 Heat of formation + Delta-G solvation = -84.394531 kcal Electronic energy + Delta-G solvation = -27003.312045 eV Core-core repulsion = 22963.390435 eV Total energy + Delta-G solvation = -4039.921609 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.23186 -41.20595 -39.64492 -37.76628 -35.94023 -35.39725 -33.39546 -32.09342 -31.38200 -30.98483 -29.06184 -26.69301 -26.41916 -24.15836 -23.10687 -22.46563 -21.94275 -20.68033 -19.83609 -18.82807 -18.20394 -17.03112 -16.84058 -16.42055 -16.35938 -16.20551 -15.97962 -15.43557 -15.23272 -14.80101 -14.56548 -14.32315 -14.25558 -14.05540 -13.94780 -13.56069 -13.19143 -12.70678 -12.38439 -12.20615 -12.16463 -11.89728 -11.78395 -11.74684 -11.39875 -10.94444 -10.75882 -10.64977 -10.58328 -10.18250 -9.90393 -9.48906 -9.32246 -9.14232 -9.12804 -8.88429 -8.64080 -8.39707 -6.04077 -4.07247 0.57879 0.73922 2.48925 2.86536 3.18295 3.28260 3.35970 3.38925 3.41392 3.87309 4.02018 4.20087 4.36781 4.42545 4.53682 4.63634 4.68607 4.77443 4.85589 4.98795 5.06816 5.18653 5.31933 5.34368 5.53514 5.54656 5.64169 5.66158 5.76171 5.78840 5.96679 6.13280 6.20984 6.26673 6.46122 6.57371 6.68556 6.89468 6.97693 7.00677 7.61337 7.73561 7.92866 7.94624 8.35185 8.59759 8.99604 9.57141 11.07204 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013399 B = 0.002955 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.195041 B = 9474.788971 C =11089.274282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.133 3.867 12 N -0.739 5.739 13 C 0.704 3.296 14 O -0.587 6.587 15 N -0.631 5.631 16 C 0.098 3.902 17 C 0.049 3.951 18 O -0.324 6.324 19 C 0.141 3.859 20 C -0.174 4.174 21 C 0.117 3.883 22 F -0.136 7.136 23 C -0.157 4.157 24 C -0.058 4.058 25 C -0.151 4.151 26 C 0.157 3.843 27 H 0.261 0.739 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.392 0.608 35 H 0.078 0.922 36 H 0.111 0.889 37 H 0.066 0.934 38 H 0.113 0.887 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.090 0.910 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.169 -22.266 -3.999 25.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.010 3.990 12 N -0.394 5.394 13 C 0.405 3.595 14 O -0.465 6.465 15 N -0.368 5.368 16 C -0.026 4.026 17 C -0.026 4.026 18 O -0.240 6.240 19 C 0.096 3.904 20 C -0.193 4.193 21 C 0.098 3.902 22 F -0.115 7.115 23 C -0.176 4.176 24 C -0.077 4.077 25 C -0.153 4.153 26 C 0.033 3.967 27 H 0.070 0.930 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.227 0.773 35 H 0.096 0.904 36 H 0.129 0.871 37 H 0.084 0.916 38 H 0.130 0.870 39 H 0.160 0.840 40 H 0.161 0.839 41 H 0.160 0.840 42 H 0.109 0.891 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.186 -22.463 -3.904 25.396 hybrid contribution 0.975 1.190 -0.395 1.588 sum 12.160 -21.273 -4.300 24.878 Atomic orbital electron populations 1.69975 1.06062 1.26595 1.50575 1.25031 0.94851 0.99315 0.95276 0.86535 0.80036 0.83783 0.77619 1.19758 1.21004 1.20996 1.21227 0.92997 0.90904 1.50890 0.92604 1.19026 0.93838 0.90784 0.97709 1.21892 0.99827 0.93321 1.00768 1.21554 0.91327 0.84133 1.01990 1.45558 1.10475 1.04452 1.78954 1.15973 0.84887 0.80884 0.77718 1.90909 1.14170 1.83655 1.57732 1.47073 1.05017 1.06153 1.78591 1.21854 1.02515 0.81090 0.97149 1.23397 0.78342 1.02833 0.98027 1.86091 1.21349 1.35962 1.80605 1.18117 0.95739 0.86345 0.90186 1.21215 1.04409 0.98756 0.94906 1.17469 0.98054 0.94437 0.80269 1.91524 1.85153 1.97118 1.37680 1.21274 1.03443 0.97378 0.95518 1.20731 0.95244 0.97623 0.94057 1.20892 1.02814 0.93500 0.98115 1.20579 0.80905 1.03259 0.91934 0.92965 0.96254 0.96223 0.92755 0.92803 0.91742 0.91962 0.77294 0.90412 0.87085 0.91582 0.86956 0.84030 0.83941 0.83988 0.89144 0.88604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.29 9.11 -34.44 -0.31 -14.61 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.26 5.27 -26.73 -0.14 -2.40 16 11 C 0.13 2.29 5.68 -4.04 -0.02 2.27 16 12 N -0.74 -10.42 5.43 -65.23 -0.35 -10.77 16 13 C 0.70 10.48 8.26 -86.91 -0.72 9.77 16 14 O -0.59 -11.01 15.65 5.29 0.08 -10.93 16 15 N -0.63 -6.99 2.68 -180.41 -0.48 -7.48 16 16 C 0.10 0.90 6.29 -4.28 -0.03 0.87 16 17 C 0.05 0.40 6.70 37.00 0.25 0.64 16 18 O -0.32 -3.05 9.90 -17.95 -0.18 -3.22 16 19 C 0.14 1.38 5.59 -39.14 -0.22 1.16 16 20 C -0.17 -1.66 9.97 -39.31 -0.39 -2.05 16 21 C 0.12 1.16 7.29 -39.45 -0.29 0.87 16 22 F -0.14 -1.44 17.26 2.25 0.04 -1.40 16 23 C -0.16 -1.42 10.04 -39.41 -0.40 -1.81 16 24 C -0.06 -0.50 9.71 -39.74 -0.39 -0.89 16 25 C -0.15 -1.40 5.51 -104.16 -0.57 -1.97 16 26 C 0.16 1.35 5.48 -4.63 -0.03 1.32 16 27 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.05 0.96 8.14 -51.92 -0.42 0.54 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.39 4.43 6.07 -40.82 -0.25 4.18 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.11 1.16 6.85 -51.93 -0.36 0.80 16 37 H 0.07 0.61 7.88 -51.93 -0.41 0.20 16 38 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.14 0.97 8.01 -52.48 -0.42 0.55 16 42 H 0.09 0.67 5.84 -51.93 -0.30 0.36 16 43 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 360.46 15.07 5.43 5.43 Total: -1.00 -33.25 360.46 -9.16 -42.42 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -5.93 Total: 0.43 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -3.49 Total: -4.86 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: -0.10 Total: -44.04 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.09 Total: -14.16 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.25 -9.16 -42.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598983127.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.979 kcal (2) G-P(sol) polarization free energy of solvation -33.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds