Wall clock time and date at job start Tue Mar 31 2020 13:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30625 * 1 3 3 Si 1.86801 * 120.00267 * 2 1 4 4 H 1.48504 * 109.46950 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46909 * 119.99967 * 3 2 1 6 6 H 1.48494 * 109.47328 * 240.00128 * 3 2 1 7 7 C 1.40285 * 119.99664 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99868 * 160.08792 * 7 2 1 9 9 C 1.40866 * 120.00022 * 340.08597 * 7 2 1 10 10 C 1.40717 * 120.33200 * 325.92658 * 9 7 2 11 11 C 1.37582 * 119.88378 * 180.02562 * 10 9 7 12 12 C 1.38846 * 120.57631 * 0.02562 * 11 10 9 13 13 C 1.38201 * 120.67652 * 0.02562 * 12 11 10 14 14 C 1.39245 * 120.09227 * 359.66929 * 13 12 11 15 15 C 1.47391 * 120.28870 * 180.30272 * 14 13 12 16 16 O 1.21620 * 120.00578 * 173.92165 * 15 14 13 17 17 N 1.34778 * 119.99766 * 353.92278 * 15 14 13 18 18 C 1.39834 * 120.00190 * 185.23971 * 17 15 14 19 19 C 1.38937 * 120.65642 * 144.53836 * 18 17 15 20 20 N 1.31423 * 120.49686 * 179.80313 * 19 18 17 21 21 C 1.32737 * 122.51257 * 0.65785 * 20 19 18 22 22 C 1.37674 * 120.21489 * 359.46126 * 21 20 19 23 23 C 1.39040 * 120.65633 * 324.80921 * 18 17 15 24 24 C 1.50509 * 122.83524 * 180.45417 * 22 21 20 25 25 C 1.52761 * 110.57228 * 342.48134 * 24 22 21 26 26 C 1.53321 * 108.34774 * 50.84391 * 25 24 22 27 27 C 1.50751 * 117.47593 * 179.28962 * 21 20 19 28 28 H 0.97000 * 120.00367 * 173.63499 * 1 2 3 29 29 H 1.08000 * 120.05556 * 359.97438 * 10 9 7 30 30 H 1.08001 * 119.71346 * 179.97438 * 11 10 9 31 31 H 1.08001 * 119.65833 * 179.97438 * 12 11 10 32 32 H 1.08007 * 119.95162 * 179.97438 * 13 12 11 33 33 H 0.97011 * 119.99792 * 5.24151 * 17 15 14 34 34 H 1.07996 * 119.75352 * 0.07082 * 19 18 17 35 35 H 1.08005 * 120.58627 * 359.93521 * 23 18 17 36 36 H 1.08998 * 109.25890 * 102.76149 * 24 22 21 37 37 H 1.09010 * 109.25615 * 222.20051 * 24 22 21 38 38 H 1.09004 * 109.68974 * 170.56308 * 25 24 22 39 39 H 1.09002 * 109.68610 * 291.13495 * 25 24 22 40 40 H 1.09003 * 109.64019 * 49.79678 * 26 25 24 41 41 H 1.09004 * 109.64390 * 170.42346 * 26 25 24 42 42 H 1.08998 * 109.25396 * 41.99114 * 27 21 20 43 43 H 1.08996 * 109.22883 * 282.53210 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 1.2753 2.7465 0.0006 5 1 3.0941 1.6963 1.2126 6 1 3.0940 1.6964 -1.2124 7 6 2.0076 -1.2149 -0.0005 8 1 3.0392 -1.2428 -0.3191 9 6 1.3664 -2.3986 0.4144 10 6 0.3985 -2.3620 1.4352 11 6 -0.2217 -3.5237 1.8337 12 6 0.0990 -4.7360 1.2375 13 6 1.0468 -4.7991 0.2336 14 6 1.6872 -3.6396 -0.1958 15 6 2.6939 -3.7009 -1.2707 16 8 3.1692 -2.6748 -1.7181 17 7 3.0877 -4.8943 -1.7578 18 6 4.1201 -4.9593 -2.6986 19 6 5.0202 -6.0177 -2.6907 20 7 5.9871 -6.0776 -3.5789 21 6 6.1631 -5.1440 -4.5059 22 6 5.3109 -4.0648 -4.5730 23 6 4.2696 -3.9631 -3.6570 24 6 5.4497 -2.9783 -5.6052 25 6 6.8425 -3.0080 -6.2319 26 6 7.1335 -4.4407 -6.6938 27 6 7.3190 -5.3183 -5.4578 28 1 -0.4851 -0.8348 -0.0931 29 1 0.1435 -1.4239 1.9055 30 1 -0.9639 -3.4926 2.6176 31 1 -0.3967 -5.6389 1.5621 32 1 1.2876 -5.7484 -0.2218 33 1 2.6548 -5.7083 -1.4556 34 1 4.9220 -6.7992 -1.9519 35 1 3.5893 -3.1249 -3.6891 36 1 4.7018 -3.1250 -6.3844 37 1 5.2892 -2.0097 -5.1315 38 1 6.8750 -2.3327 -7.0869 39 1 7.5839 -2.7025 -5.4936 40 1 6.2963 -4.8123 -7.2847 41 1 8.0438 -4.4548 -7.2932 42 1 7.3780 -6.3627 -5.7642 43 1 8.2442 -5.0387 -4.9540 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601424755.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:13 Heat of formation + Delta-G solvation = -1.696474 kcal Electronic energy + Delta-G solvation = -26248.164135 eV Core-core repulsion = 22642.597807 eV Total energy + Delta-G solvation = -3605.566328 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.72245 -39.19692 -37.38174 -36.40977 -34.50145 -33.88793 -32.61673 -30.46303 -29.94134 -29.55242 -28.48968 -25.44357 -24.39410 -23.39570 -22.48801 -22.20964 -21.09767 -20.03152 -19.42734 -18.33216 -17.25894 -16.31987 -16.14586 -15.99478 -15.02721 -14.80361 -14.46564 -14.27201 -14.14014 -13.99774 -13.94045 -13.63304 -13.26801 -12.93827 -12.76156 -12.63915 -12.45291 -12.31065 -12.06698 -11.79568 -11.26246 -11.07307 -11.01602 -10.92418 -10.87186 -10.67924 -10.44572 -10.32604 -10.17316 -9.79674 -9.37600 -9.18294 -9.06651 -8.57866 -7.99009 -7.80668 -7.73906 -7.27242 -4.60009 1.24600 1.50986 2.10347 2.62893 3.13689 3.22943 3.33822 3.55188 3.73143 3.95044 4.03377 4.36281 4.50278 4.65504 4.79586 4.83525 4.99689 5.08839 5.26628 5.31959 5.46394 5.47428 5.53373 5.64097 5.68336 5.74417 5.83268 5.85219 5.94246 5.94635 6.03696 6.10714 6.19464 6.30410 6.39923 6.49363 6.59468 6.68268 6.85893 7.12242 7.16675 7.35955 7.45446 7.59738 7.74507 7.90474 8.05294 8.10072 8.15668 8.57866 8.70409 9.04139 9.91064 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013536 B = 0.003826 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.090466 B = 7315.774785 C = 9092.662962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.033 3.967 3 Si 1.068 2.932 4 H -0.273 1.273 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.462 4.462 8 H 0.104 0.896 9 C 0.122 3.878 10 C -0.197 4.197 11 C -0.074 4.074 12 C -0.256 4.256 13 C -0.042 4.042 14 C -0.270 4.270 15 C 0.561 3.439 16 O -0.518 6.518 17 N -0.684 5.684 18 C 0.117 3.883 19 C 0.068 3.932 20 N -0.472 5.472 21 C 0.095 3.905 22 C -0.105 4.105 23 C -0.087 4.087 24 C -0.077 4.077 25 C -0.120 4.120 26 C -0.119 4.119 27 C -0.060 4.060 28 H 0.299 0.701 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.405 0.595 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.254 -6.829 -8.639 13.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.190 4.190 3 Si 0.891 3.109 4 H -0.198 1.198 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.488 4.488 8 H 0.122 0.878 9 C 0.117 3.883 10 C -0.216 4.216 11 C -0.093 4.093 12 C -0.275 4.275 13 C -0.061 4.061 14 C -0.275 4.275 15 C 0.358 3.642 16 O -0.395 6.395 17 N -0.330 5.330 18 C 0.019 3.981 19 C -0.095 4.095 20 N -0.180 5.180 21 C -0.041 4.041 22 C -0.107 4.107 23 C -0.116 4.116 24 C -0.115 4.115 25 C -0.157 4.157 26 C -0.157 4.157 27 C -0.098 4.098 28 H 0.113 0.887 29 H 0.126 0.874 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.241 0.759 34 H 0.170 0.830 35 H 0.169 0.831 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.854 -5.102 -8.804 13.488 hybrid contribution -0.918 -1.651 0.383 1.928 sum 7.936 -6.753 -8.421 13.398 Atomic orbital electron populations 1.70381 1.08246 1.34457 1.27818 1.27288 0.95640 1.04703 0.91328 0.83585 0.75625 0.73314 0.78372 1.19773 1.19855 1.19706 1.21169 1.01693 0.92090 1.33854 0.87827 1.17459 0.89722 0.91844 0.89277 1.21270 1.02826 0.97236 1.00277 1.20775 0.97566 0.93140 0.97846 1.20263 1.05853 0.96774 1.04648 1.20712 0.94860 0.95241 0.95272 1.19204 1.08409 0.95544 1.04358 1.18584 0.81911 0.81614 0.82101 1.90680 1.55815 1.32913 1.60084 1.43693 1.35863 1.10969 1.42484 1.18826 0.91292 0.97231 0.90787 1.22424 0.90598 0.98391 0.98109 1.67395 1.19666 1.27561 1.03394 1.20829 0.96884 0.90621 0.95741 1.20350 0.95878 0.96781 0.97735 1.21865 0.98436 0.99739 0.91524 1.20418 0.97754 0.96938 0.96408 1.21567 0.96818 0.96844 1.00508 1.21569 1.01942 0.95223 0.96920 1.20236 0.95068 1.00846 0.93666 0.88720 0.87392 0.88682 0.88672 0.89043 0.75870 0.82971 0.83068 0.90538 0.90216 0.91285 0.91495 0.91572 0.91171 0.90275 0.90440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.32 12.54 55.56 0.70 -19.62 16 2 C 0.03 0.82 5.02 -17.30 -0.09 0.74 16 3 Si 1.07 21.77 29.98 -169.99 -5.10 16.67 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 5 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 7 C -0.46 -12.19 7.61 -37.82 -0.29 -12.48 16 8 H 0.10 2.86 6.00 -52.49 -0.32 2.55 16 9 C 0.12 3.10 5.16 -106.54 -0.55 2.55 16 10 C -0.20 -4.72 7.91 -38.89 -0.31 -5.03 16 11 C -0.07 -1.58 10.01 -39.60 -0.40 -1.97 16 12 C -0.26 -5.12 10.03 -39.37 -0.39 -5.52 16 13 C -0.04 -0.84 9.52 -39.22 -0.37 -1.22 16 14 C -0.27 -6.28 5.92 -104.37 -0.62 -6.89 16 15 C 0.56 12.49 7.57 -12.53 -0.09 12.39 16 16 O -0.52 -12.92 11.09 5.26 0.06 -12.86 16 17 N -0.68 -12.09 5.30 -10.80 -0.06 -12.15 16 18 C 0.12 2.01 6.32 -83.65 -0.53 1.48 16 19 C 0.07 1.04 11.14 -17.47 -0.19 0.84 16 20 N -0.47 -7.38 10.17 -9.33 -0.09 -7.47 16 21 C 0.10 1.39 6.62 -82.38 -0.55 0.84 16 22 C -0.10 -1.58 5.74 -104.62 -0.60 -2.18 16 23 C -0.09 -1.54 8.40 -38.98 -0.33 -1.87 16 24 C -0.08 -0.94 5.68 -28.10 -0.16 -1.10 16 25 C -0.12 -1.16 5.98 -26.69 -0.16 -1.32 16 26 C -0.12 -1.06 5.97 -26.71 -0.16 -1.22 16 27 C -0.06 -0.66 5.91 -28.00 -0.17 -0.83 16 28 H 0.30 7.90 6.67 -40.82 -0.27 7.63 16 29 H 0.11 2.64 6.96 -52.49 -0.37 2.27 16 30 H 0.10 1.76 8.06 -52.49 -0.42 1.33 16 31 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.09 1.48 6.42 -52.48 -0.34 1.14 16 33 H 0.40 5.93 6.88 -40.82 -0.28 5.65 16 34 H 0.15 1.92 8.06 -52.49 -0.42 1.50 16 35 H 0.15 2.96 6.31 -52.48 -0.33 2.63 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.08 1.02 8.13 -51.92 -0.42 0.59 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 40 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 349.39 15.07 5.27 5.27 Total: -1.00 -29.08 349.39 -10.52 -39.61 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -5.34 Total: 13.35 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -5.95 Total: -22.78 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.54 Total: -39.25 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.06 Total: -12.86 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.10 Total: 16.67 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.08 -10.52 -39.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601424755.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.910 kcal (2) G-P(sol) polarization free energy of solvation -29.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds