Wall clock time and date at job start Tue Mar 31 2020 13:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30625 * 1 3 3 Si 1.86801 * 120.00267 * 2 1 4 4 H 1.48504 * 109.46950 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46909 * 119.99967 * 3 2 1 6 6 H 1.48494 * 109.47328 * 240.00128 * 3 2 1 7 7 C 1.40285 * 119.99664 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99868 * 160.08792 * 7 2 1 9 9 C 1.40866 * 120.00022 * 340.08597 * 7 2 1 10 10 C 1.40717 * 120.33200 * 325.92658 * 9 7 2 11 11 C 1.37582 * 119.88378 * 180.02562 * 10 9 7 12 12 C 1.38846 * 120.57631 * 0.02562 * 11 10 9 13 13 C 1.38201 * 120.67652 * 0.02562 * 12 11 10 14 14 C 1.39245 * 120.09227 * 359.66929 * 13 12 11 15 15 C 1.47391 * 120.28870 * 180.30272 * 14 13 12 16 16 O 1.21620 * 120.00578 * 173.92165 * 15 14 13 17 17 N 1.34778 * 119.99766 * 353.92278 * 15 14 13 18 18 C 1.39834 * 120.00190 * 185.23971 * 17 15 14 19 19 C 1.38937 * 120.65642 * 144.53836 * 18 17 15 20 20 N 1.31423 * 120.49686 * 179.80313 * 19 18 17 21 21 C 1.32737 * 122.51257 * 0.65785 * 20 19 18 22 22 C 1.37674 * 120.21489 * 359.46126 * 21 20 19 23 23 C 1.39040 * 120.65633 * 324.80921 * 18 17 15 24 24 C 1.50509 * 122.83524 * 180.45417 * 22 21 20 25 25 C 1.52761 * 110.57228 * 342.48134 * 24 22 21 26 26 C 1.53321 * 108.34774 * 50.84391 * 25 24 22 27 27 C 1.50751 * 117.47593 * 179.28962 * 21 20 19 28 28 H 0.97000 * 120.00367 * 173.63499 * 1 2 3 29 29 H 1.08000 * 120.05556 * 359.97438 * 10 9 7 30 30 H 1.08001 * 119.71346 * 179.97438 * 11 10 9 31 31 H 1.08001 * 119.65833 * 179.97438 * 12 11 10 32 32 H 1.08007 * 119.95162 * 179.97438 * 13 12 11 33 33 H 0.97011 * 119.99792 * 5.24151 * 17 15 14 34 34 H 1.07996 * 119.75352 * 0.07082 * 19 18 17 35 35 H 1.08005 * 120.58627 * 359.93521 * 23 18 17 36 36 H 1.08998 * 109.25890 * 102.76149 * 24 22 21 37 37 H 1.09010 * 109.25615 * 222.20051 * 24 22 21 38 38 H 1.09004 * 109.68974 * 170.56308 * 25 24 22 39 39 H 1.09002 * 109.68610 * 291.13495 * 25 24 22 40 40 H 1.09003 * 109.64019 * 49.79678 * 26 25 24 41 41 H 1.09004 * 109.64390 * 170.42346 * 26 25 24 42 42 H 1.08998 * 109.25396 * 41.99114 * 27 21 20 43 43 H 1.08996 * 109.22883 * 282.53210 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 1.2753 2.7465 0.0006 5 1 3.0941 1.6963 1.2126 6 1 3.0940 1.6964 -1.2124 7 6 2.0076 -1.2149 -0.0005 8 1 3.0392 -1.2428 -0.3191 9 6 1.3664 -2.3986 0.4144 10 6 0.3985 -2.3620 1.4352 11 6 -0.2217 -3.5237 1.8337 12 6 0.0990 -4.7360 1.2375 13 6 1.0468 -4.7991 0.2336 14 6 1.6872 -3.6396 -0.1958 15 6 2.6939 -3.7009 -1.2707 16 8 3.1692 -2.6748 -1.7181 17 7 3.0877 -4.8943 -1.7578 18 6 4.1201 -4.9593 -2.6986 19 6 5.0202 -6.0177 -2.6907 20 7 5.9871 -6.0776 -3.5789 21 6 6.1631 -5.1440 -4.5059 22 6 5.3109 -4.0648 -4.5730 23 6 4.2696 -3.9631 -3.6570 24 6 5.4497 -2.9783 -5.6052 25 6 6.8425 -3.0080 -6.2319 26 6 7.1335 -4.4407 -6.6938 27 6 7.3190 -5.3183 -5.4578 28 1 -0.4851 -0.8348 -0.0931 29 1 0.1435 -1.4239 1.9055 30 1 -0.9639 -3.4926 2.6176 31 1 -0.3967 -5.6389 1.5621 32 1 1.2876 -5.7484 -0.2218 33 1 2.6548 -5.7083 -1.4556 34 1 4.9220 -6.7992 -1.9519 35 1 3.5893 -3.1249 -3.6891 36 1 4.7018 -3.1250 -6.3844 37 1 5.2892 -2.0097 -5.1315 38 1 6.8750 -2.3327 -7.0869 39 1 7.5839 -2.7025 -5.4936 40 1 6.2963 -4.8123 -7.2847 41 1 8.0438 -4.4548 -7.2932 42 1 7.3780 -6.3627 -5.7642 43 1 8.2442 -5.0387 -4.9540 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601424755.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:12 Heat of formation + Delta-G solvation = -16.996403 kcal Electronic energy + Delta-G solvation = -26248.827590 eV Core-core repulsion = 22642.597807 eV Total energy + Delta-G solvation = -3606.229782 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.02685 -40.75464 -39.01178 -37.57530 -36.12465 -35.53489 -33.81284 -32.06758 -31.37102 -30.95692 -29.78648 -27.22710 -25.59014 -24.75965 -23.66872 -23.56180 -22.79788 -21.45646 -20.68820 -20.05195 -18.77683 -17.76791 -17.35623 -17.26831 -16.60463 -16.23183 -16.15114 -15.70109 -15.66057 -15.31768 -15.11220 -14.83052 -14.59708 -14.43222 -14.16062 -13.98506 -13.83580 -13.71056 -13.44258 -12.99397 -12.84678 -12.74025 -12.54335 -12.07327 -11.99951 -11.91508 -11.78310 -11.63963 -11.54466 -11.41292 -11.00883 -10.75618 -10.40840 -10.11945 -9.72274 -9.55867 -9.24108 -9.07922 -6.52272 -0.04303 0.19758 0.40885 0.86735 1.43954 1.58323 1.73463 2.05117 2.12548 2.26513 2.65140 2.75771 3.31383 3.49416 3.64919 3.81840 3.87816 3.92299 4.01521 4.13104 4.18247 4.25640 4.39846 4.49088 4.52815 4.60903 4.67863 4.72828 4.81110 4.83371 4.98619 5.00694 5.07473 5.08186 5.12814 5.24906 5.32234 5.36904 5.43387 5.46965 5.58517 5.64829 5.77348 5.86622 5.91412 6.12271 6.27613 6.49420 6.75058 6.82010 6.92902 7.36842 7.98509 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013536 B = 0.003826 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.090466 B = 7315.774785 C = 9092.662962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.001 3.999 3 Si 1.112 2.888 4 H -0.263 1.263 5 H -0.260 1.260 6 H -0.272 1.272 7 C -0.506 4.506 8 H 0.079 0.921 9 C 0.099 3.901 10 C -0.224 4.224 11 C -0.070 4.070 12 C -0.242 4.242 13 C -0.040 4.040 14 C -0.285 4.285 15 C 0.558 3.442 16 O -0.554 6.554 17 N -0.665 5.665 18 C 0.092 3.908 19 C 0.076 3.924 20 N -0.481 5.481 21 C 0.097 3.903 22 C -0.110 4.110 23 C -0.108 4.108 24 C -0.080 4.080 25 C -0.116 4.116 26 C -0.112 4.112 27 C -0.061 4.061 28 H 0.284 0.716 29 H 0.091 0.909 30 H 0.126 0.874 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.420 0.580 34 H 0.183 0.817 35 H 0.121 0.879 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.091 0.909 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.376 -9.588 -9.402 16.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.215 4.215 3 Si 0.929 3.071 4 H -0.187 1.187 5 H -0.185 1.185 6 H -0.197 1.197 7 C -0.534 4.534 8 H 0.097 0.903 9 C 0.095 3.905 10 C -0.243 4.243 11 C -0.088 4.088 12 C -0.261 4.261 13 C -0.059 4.059 14 C -0.290 4.290 15 C 0.353 3.647 16 O -0.433 6.433 17 N -0.312 5.312 18 C -0.005 4.005 19 C -0.086 4.086 20 N -0.189 5.189 21 C -0.039 4.039 22 C -0.113 4.113 23 C -0.137 4.137 24 C -0.117 4.117 25 C -0.153 4.153 26 C -0.150 4.150 27 C -0.098 4.098 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.144 0.856 31 H 0.156 0.844 32 H 0.155 0.845 33 H 0.260 0.740 34 H 0.200 0.800 35 H 0.139 0.861 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.109 0.891 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.117 0.883 42 H 0.109 0.891 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.979 -7.920 -9.571 15.934 hybrid contribution -1.248 -1.110 0.583 1.769 sum 8.731 -9.030 -8.987 15.445 Atomic orbital electron populations 1.70486 1.08593 1.33249 1.31118 1.28405 0.95780 1.07219 0.90078 0.83070 0.74894 0.70337 0.78788 1.18692 1.18450 1.19668 1.21066 1.01124 0.93759 1.37433 0.90339 1.17841 0.90289 0.92714 0.89652 1.21222 1.04200 0.97934 1.00942 1.21193 0.97079 0.92606 0.97940 1.20829 1.04536 0.97684 1.03051 1.21168 0.93829 0.95904 0.94977 1.19589 1.08814 0.96124 1.04497 1.18616 0.81662 0.82409 0.81981 1.90672 1.56996 1.34665 1.61001 1.43279 1.35807 1.10066 1.42046 1.18990 0.92124 0.98310 0.91073 1.22814 0.89525 0.98021 0.98253 1.67542 1.19654 1.27954 1.03780 1.21500 0.97190 0.89634 0.95598 1.20647 0.95035 0.97866 0.97719 1.21821 0.99252 0.99338 0.93240 1.20503 1.00119 0.95152 0.95967 1.21583 0.94573 0.98208 1.00985 1.21579 1.03449 0.93809 0.96179 1.20398 0.93610 1.02117 0.93722 0.90394 0.89119 0.85624 0.84375 0.84517 0.74011 0.80035 0.86109 0.89540 0.91749 0.89072 0.91929 0.91351 0.88309 0.89134 0.89539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.45 12.54 21.88 0.27 -44.17 16 2 C 0.00 0.08 5.02 85.37 0.43 0.51 16 3 Si 1.11 46.35 29.98 68.60 2.06 48.41 16 4 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 5 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 6 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 7 C -0.51 -28.66 7.61 23.41 0.18 -28.48 16 8 H 0.08 4.72 6.00 -2.91 -0.02 4.70 16 9 C 0.10 5.29 5.16 -21.11 -0.11 5.18 16 10 C -0.22 -11.03 7.91 22.72 0.18 -10.85 16 11 C -0.07 -2.84 10.01 22.26 0.22 -2.61 16 12 C -0.24 -8.80 10.03 22.41 0.22 -8.58 16 13 C -0.04 -1.51 9.52 22.50 0.21 -1.30 16 14 C -0.29 -13.41 5.92 -19.70 -0.12 -13.53 16 15 C 0.56 25.59 7.57 86.65 0.66 26.25 16 16 O -0.55 -29.52 11.09 -4.09 -0.05 -29.57 16 17 N -0.66 -23.29 5.30 -306.33 -1.62 -24.91 16 18 C 0.09 3.17 6.32 38.22 0.24 3.42 16 19 C 0.08 2.22 11.14 84.92 0.95 3.16 16 20 N -0.48 -14.16 10.17 -183.42 -1.87 -16.02 16 21 C 0.10 2.66 6.62 42.30 0.28 2.94 16 22 C -0.11 -3.32 5.74 -19.86 -0.11 -3.44 16 23 C -0.11 -3.96 8.40 22.66 0.19 -3.77 16 24 C -0.08 -1.92 5.68 29.71 0.17 -1.75 16 25 C -0.12 -2.01 5.98 30.62 0.18 -1.82 16 26 C -0.11 -1.65 5.97 30.61 0.18 -1.47 16 27 C -0.06 -1.16 5.91 29.77 0.18 -0.99 16 28 H 0.28 16.01 6.67 -92.71 -0.62 15.39 16 29 H 0.09 4.69 6.96 -2.91 -0.02 4.67 16 30 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 31 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 32 H 0.14 3.83 6.42 -2.91 -0.02 3.81 16 33 H 0.42 11.44 6.88 -92.70 -0.64 10.80 16 34 H 0.18 4.05 8.06 -2.91 -0.02 4.03 16 35 H 0.12 5.15 6.31 -2.91 -0.02 5.13 16 36 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.06 1.73 8.13 -2.38 -0.02 1.71 16 38 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 40 H 0.07 1.01 8.10 -2.39 -0.02 0.99 16 41 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -68.82 349.39 3.50 -65.32 By element: Atomic # 1 Polarization: 37.51 SS G_CDS: 0.56 Total: 38.08 kcal Atomic # 6 Polarization: -41.27 SS G_CDS: 4.13 Total: -37.14 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -3.22 Total: -85.11 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.05 Total: -29.57 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.06 Total: 48.41 kcal Total: -68.82 3.50 -65.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601424755.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.328 kcal (2) G-P(sol) polarization free energy of solvation -68.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds