Wall clock time and date at job start Tue Mar 31 2020 13:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30625 * 1 3 3 Si 1.86804 * 120.00520 * 2 1 4 4 H 1.48498 * 109.46859 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47122 * 120.00095 * 3 2 1 6 6 H 1.48492 * 109.47190 * 240.00598 * 3 2 1 7 7 C 1.40278 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00249 * 160.70813 * 7 2 1 9 9 C 1.40894 * 119.99597 * 340.70769 * 7 2 1 10 10 C 1.40705 * 120.33234 * 325.80030 * 9 7 2 11 11 C 1.37591 * 119.88283 * 180.02562 * 10 9 7 12 12 C 1.38828 * 120.57098 * 359.97438 * 11 10 9 13 13 C 1.38222 * 120.67657 * 0.02562 * 12 11 10 14 14 C 1.39230 * 120.09116 * 359.71246 * 13 12 11 15 15 C 1.47430 * 120.28017 * 180.28719 * 14 13 12 16 16 O 1.21614 * 119.99642 * 176.98855 * 15 14 13 17 17 N 1.34768 * 120.00167 * 356.98508 * 15 14 13 18 18 C 1.46501 * 120.00037 * 180.02562 * 17 15 14 19 19 C 1.52996 * 109.47452 * 184.34679 * 18 17 15 20 20 C 1.50705 * 115.54901 * 302.12126 * 19 18 17 21 21 C 1.38225 * 119.61730 * 313.72459 * 20 19 18 22 22 C 1.38628 * 119.16528 * 179.97438 * 21 20 19 23 23 C 1.38674 * 118.41599 * 359.97438 * 22 21 20 24 24 C 1.38184 * 119.16537 * 0.02562 * 23 22 21 25 25 N 1.31855 * 119.61982 * 133.44840 * 20 19 18 26 26 C 1.53002 * 117.50266 * 156.44913 * 19 18 17 27 27 C 1.52996 * 117.50243 * 87.78853 * 19 18 17 28 28 H 0.97001 * 120.00191 * 174.79686 * 1 2 3 29 29 H 1.08004 * 120.05506 * 359.97438 * 10 9 7 30 30 H 1.07998 * 119.71502 * 179.97438 * 11 10 9 31 31 H 1.08002 * 119.65754 * 179.97438 * 12 11 10 32 32 H 1.07996 * 119.95170 * 179.97438 * 13 12 11 33 33 H 0.97002 * 120.00005 * 0.02562 * 17 15 14 34 34 H 1.08996 * 109.46925 * 304.34630 * 18 17 15 35 35 H 1.08997 * 109.47247 * 64.34333 * 18 17 15 36 36 H 1.08002 * 120.41801 * 359.95487 * 21 20 19 37 37 H 1.07995 * 120.79635 * 180.02562 * 22 21 20 38 38 H 1.08001 * 120.42102 * 180.02562 * 23 22 21 39 39 H 1.07995 * 119.61624 * 179.97438 * 24 23 22 40 40 H 1.09000 * 117.49574 * 0.02562 * 26 19 18 41 41 H 1.08994 * 117.49650 * 145.01896 * 26 19 18 42 42 H 1.09005 * 117.50264 * 214.98640 * 27 19 18 43 43 H 1.09005 * 117.49825 * 359.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 1.2755 2.7464 0.0006 5 1 3.0942 1.6963 1.2125 6 1 3.0940 1.6963 -1.2125 7 6 2.0076 -1.2149 -0.0005 8 1 3.0421 -1.2410 -0.3095 9 6 1.3624 -2.4009 0.4021 10 6 0.3869 -2.3703 1.4156 11 6 -0.2371 -3.5341 1.8019 12 6 0.0867 -4.7423 1.1996 13 6 1.0414 -4.7994 0.2017 14 6 1.6862 -3.6378 -0.2147 15 6 2.7006 -3.6928 -1.2831 16 8 3.2210 -2.6681 -1.6808 17 7 3.0513 -4.8787 -1.8189 18 6 4.0597 -4.9334 -2.8802 19 6 4.1927 -6.3720 -3.3837 20 6 4.5605 -7.3947 -2.3397 21 6 5.5861 -7.1267 -1.4525 22 6 5.9163 -8.0738 -0.4956 23 6 5.1989 -9.2602 -0.4663 24 6 4.1864 -9.4578 -1.3857 25 7 3.8968 -8.5324 -2.2795 26 6 4.7395 -6.5779 -4.7978 27 6 3.2554 -6.8164 -4.5084 28 1 -0.4850 -0.8366 -0.0762 29 1 0.1289 -1.4349 1.8900 30 1 -0.9851 -3.5076 2.5804 31 1 -0.4120 -5.6471 1.5147 32 1 1.2844 -5.7456 -0.2585 33 1 2.6359 -5.6959 -1.5019 34 1 3.7561 -4.2869 -3.7035 35 1 5.0188 -4.5957 -2.4878 36 1 6.1236 -6.1914 -1.5044 37 1 6.7126 -7.8918 0.2108 38 1 5.4287 -10.0203 0.2658 39 1 3.6234 -10.3792 -1.3697 40 1 5.0049 -5.6885 -5.3692 41 1 5.3649 -7.4532 -4.9729 42 1 2.9051 -7.8485 -4.4933 43 1 2.5437 -6.0840 -4.8893 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601434078.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:19 Heat of formation + Delta-G solvation = 22.488192 kcal Electronic energy + Delta-G solvation = -26319.932464 eV Core-core repulsion = 22715.414862 eV Total energy + Delta-G solvation = -3604.517602 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.54588 -40.70453 -39.04802 -38.27040 -35.96157 -34.92348 -33.34216 -32.03708 -31.86330 -31.24241 -28.34182 -26.91118 -24.94393 -24.51058 -23.91853 -23.20562 -22.77830 -21.26022 -20.88067 -19.92835 -18.38139 -17.78679 -17.11400 -17.03674 -16.59817 -16.34391 -16.12571 -15.85883 -15.79435 -15.48649 -15.32842 -14.96416 -14.55010 -14.46655 -14.08390 -14.00113 -13.88074 -13.57069 -13.24144 -12.92487 -12.71727 -12.51878 -12.40496 -12.35786 -12.03920 -11.96385 -11.71662 -11.45099 -11.33095 -10.96928 -10.80389 -10.38694 -10.37375 -10.00953 -9.80744 -9.63204 -9.52028 -9.11527 -6.47509 0.13938 0.35230 0.37606 0.88152 1.46898 1.61975 1.77232 2.21454 2.24315 2.31104 2.71929 2.74277 2.94515 3.20629 3.53743 3.57234 3.64753 3.98191 4.06622 4.07482 4.15057 4.22140 4.25772 4.27334 4.40765 4.51585 4.59944 4.65824 4.72933 4.77722 4.82577 4.85195 4.97617 5.00647 5.11467 5.22878 5.24636 5.29907 5.40025 5.53029 5.63715 5.68934 5.78509 5.86985 5.94577 6.17922 6.30625 6.64583 6.82498 6.89789 7.04116 7.56474 8.03264 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014716 B = 0.003656 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.257112 B = 7656.149469 C = 8532.477124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C -0.002 4.002 3 Si 1.116 2.884 4 H -0.264 1.264 5 H -0.259 1.259 6 H -0.271 1.271 7 C -0.509 4.509 8 H 0.082 0.918 9 C 0.098 3.902 10 C -0.224 4.224 11 C -0.071 4.071 12 C -0.245 4.245 13 C -0.042 4.042 14 C -0.284 4.284 15 C 0.559 3.441 16 O -0.577 6.577 17 N -0.723 5.723 18 C 0.170 3.830 19 C -0.113 4.113 20 C 0.153 3.847 21 C -0.174 4.174 22 C -0.079 4.079 23 C -0.172 4.172 24 C 0.089 3.911 25 N -0.500 5.500 26 C -0.130 4.130 27 C -0.147 4.147 28 H 0.282 0.718 29 H 0.092 0.908 30 H 0.126 0.874 31 H 0.134 0.866 32 H 0.120 0.880 33 H 0.399 0.601 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.130 0.870 37 H 0.155 0.845 38 H 0.165 0.835 39 H 0.180 0.820 40 H 0.115 0.885 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.321 -17.590 -3.352 20.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.217 4.217 3 Si 0.933 3.067 4 H -0.188 1.188 5 H -0.183 1.183 6 H -0.196 1.196 7 C -0.536 4.536 8 H 0.100 0.900 9 C 0.093 3.907 10 C -0.243 4.243 11 C -0.089 4.089 12 C -0.264 4.264 13 C -0.061 4.061 14 C -0.288 4.288 15 C 0.352 3.648 16 O -0.458 6.458 17 N -0.376 5.376 18 C 0.046 3.954 19 C -0.115 4.115 20 C 0.016 3.984 21 C -0.194 4.194 22 C -0.104 4.104 23 C -0.192 4.192 24 C -0.068 4.068 25 N -0.209 5.209 26 C -0.167 4.167 27 C -0.184 4.184 28 H 0.095 0.905 29 H 0.110 0.890 30 H 0.144 0.856 31 H 0.151 0.849 32 H 0.138 0.862 33 H 0.235 0.765 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.148 0.852 37 H 0.173 0.827 38 H 0.182 0.818 39 H 0.197 0.803 40 H 0.133 0.867 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.774 -15.390 -4.189 18.204 hybrid contribution 0.466 -1.693 0.770 1.918 sum 9.240 -17.084 -3.419 19.721 Atomic orbital electron populations 1.70497 1.08636 1.33082 1.31724 1.28494 0.95819 1.07370 0.90051 0.83022 0.74800 0.70025 0.78833 1.18838 1.18321 1.19582 1.21117 1.01167 0.93525 1.37840 0.89998 1.17881 0.90379 0.92816 0.89577 1.21219 1.04134 0.97816 1.01127 1.21140 0.97269 0.92485 0.98011 1.20765 1.04524 0.97739 1.03342 1.21039 0.94222 0.95588 0.95250 1.19792 1.08521 0.95810 1.04725 1.18379 0.81787 0.82795 0.81803 1.90653 1.56575 1.34733 1.63880 1.45732 1.43569 1.08305 1.39991 1.20645 0.91474 0.93293 0.89942 1.20095 1.09922 0.91891 0.89572 1.20078 0.92053 0.91756 0.94492 1.22024 0.99083 1.01234 0.97084 1.21932 0.98927 0.92928 0.96648 1.22487 0.96979 0.98837 1.00869 1.23248 0.95299 0.97906 0.90308 1.67368 1.27678 1.01991 1.23856 1.23117 0.96810 1.04271 0.92549 1.23021 0.93286 1.03320 0.98792 0.90535 0.89025 0.85591 0.84853 0.86179 0.76517 0.91856 0.92094 0.85210 0.82729 0.81790 0.80268 0.86702 0.87504 0.87332 0.88635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.95 12.57 21.88 0.28 -45.67 16 2 C 0.00 -0.10 5.04 85.37 0.43 0.33 16 3 Si 1.12 47.29 29.98 68.60 2.06 49.34 16 4 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 5 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 7 C -0.51 -29.72 7.66 23.42 0.18 -29.54 16 8 H 0.08 5.05 5.92 -2.91 -0.02 5.03 16 9 C 0.10 5.43 5.17 -21.11 -0.11 5.32 16 10 C -0.22 -11.48 7.87 22.72 0.18 -11.31 16 11 C -0.07 -3.04 10.01 22.26 0.22 -2.82 16 12 C -0.24 -9.72 10.03 22.41 0.22 -9.50 16 13 C -0.04 -1.77 9.53 22.50 0.21 -1.56 16 14 C -0.28 -14.24 5.92 -19.70 -0.12 -14.36 16 15 C 0.56 26.97 7.73 86.67 0.67 27.64 16 16 O -0.58 -32.05 13.56 -4.08 -0.06 -32.11 16 17 N -0.72 -26.64 5.38 -466.38 -2.51 -29.15 16 18 C 0.17 5.28 5.17 86.38 0.45 5.73 16 19 C -0.11 -2.76 2.03 -52.93 -0.11 -2.86 16 20 C 0.15 3.72 5.62 42.55 0.24 3.96 16 21 C -0.17 -3.96 9.40 22.36 0.21 -3.75 16 22 C -0.08 -1.42 10.18 22.47 0.23 -1.19 16 23 C -0.17 -2.66 10.11 22.36 0.23 -2.44 16 24 C 0.09 1.61 11.18 84.67 0.95 2.55 16 25 N -0.50 -11.71 9.37 -183.89 -1.72 -13.43 16 26 C -0.13 -2.46 9.96 30.62 0.30 -2.16 16 27 C -0.15 -3.24 9.72 30.62 0.30 -2.94 16 28 H 0.28 16.43 6.56 -92.71 -0.61 15.82 16 29 H 0.09 4.89 6.94 -2.91 -0.02 4.87 16 30 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 31 H 0.13 4.27 8.06 -2.91 -0.02 4.24 16 32 H 0.12 4.21 6.41 -2.91 -0.02 4.19 16 33 H 0.40 13.51 6.12 -92.71 -0.57 12.94 16 34 H 0.06 2.08 8.11 -2.39 -0.02 2.06 16 35 H 0.06 1.92 7.39 -2.39 -0.02 1.90 16 36 H 0.13 2.94 7.29 -2.91 -0.02 2.92 16 37 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 38 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 39 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 40 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.11 2.39 7.60 -2.38 -0.02 2.37 16 43 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 Total: -1.00 -70.90 361.55 3.37 -67.53 By element: Atomic # 1 Polarization: 41.73 SS G_CDS: 0.64 Total: 42.37 kcal Atomic # 6 Polarization: -43.56 SS G_CDS: 4.69 Total: -38.88 kcal Atomic # 7 Polarization: -84.30 SS G_CDS: -3.96 Total: -88.26 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -0.06 Total: -32.11 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.06 Total: 49.34 kcal Total: -70.90 3.37 -67.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601434078.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.015 kcal (2) G-P(sol) polarization free energy of solvation -70.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds