Wall clock time and date at job start Tue Mar 31 2020 13:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30629 * 1 3 3 Si 1.86798 * 120.00087 * 2 1 4 4 H 1.48495 * 109.47365 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47284 * 300.00031 * 3 2 1 6 6 H 1.48503 * 109.47328 * 59.99880 * 3 2 1 7 7 C 1.40275 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99882 * 195.21250 * 7 2 1 9 9 C 1.40894 * 120.00020 * 15.21498 * 7 2 1 10 10 C 1.40711 * 120.32551 * 30.74180 * 9 7 2 11 11 C 1.37598 * 119.87783 * 180.02562 * 10 9 7 12 12 C 1.38829 * 120.56981 * 359.97438 * 11 10 9 13 13 C 1.38219 * 120.67720 * 359.72545 * 12 11 10 14 14 C 1.39227 * 120.08971 * 0.55507 * 13 12 11 15 15 C 1.47431 * 120.28015 * 179.72240 * 14 13 12 16 16 O 1.21613 * 120.00023 * 226.54086 * 15 14 13 17 17 N 1.34779 * 120.00075 * 46.54272 * 15 14 13 18 18 C 1.47017 * 125.65014 * 354.10652 * 17 15 14 19 19 C 1.54332 * 107.27018 * 178.84704 * 18 17 15 20 20 C 1.55156 * 103.01843 * 338.13785 * 19 18 17 21 21 H 1.08993 * 111.03967 * 277.21724 * 20 19 18 22 22 C 1.50704 * 111.00560 * 153.37835 * 20 19 18 23 23 C 1.38647 * 120.78750 * 306.07376 * 22 20 19 24 24 C 1.38207 * 119.16178 * 179.75519 * 23 22 20 25 25 N 1.31879 * 120.75979 * 0.52505 * 24 23 22 26 26 C 1.31860 * 121.72407 * 359.74740 * 25 24 23 27 27 C 1.38201 * 120.76888 * 359.97211 * 26 25 24 28 28 C 1.47426 * 125.64765 * 174.40653 * 17 15 14 29 29 H 0.97003 * 119.99999 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.05876 * 0.02562 * 10 9 7 31 31 H 1.07997 * 119.71287 * 179.97438 * 11 10 9 32 32 H 1.08002 * 119.66083 * 180.02562 * 12 11 10 33 33 H 1.07997 * 119.95792 * 180.27929 * 13 12 11 34 34 H 1.09001 * 109.88440 * 298.39485 * 18 17 15 35 35 H 1.09000 * 109.88330 * 59.55308 * 18 17 15 36 36 H 1.08998 * 110.85165 * 219.66951 * 19 18 17 37 37 H 1.08998 * 110.51725 * 96.44538 * 19 18 17 38 38 H 1.08007 * 120.42390 * 359.97438 * 23 22 20 39 39 H 1.08001 * 119.62403 * 180.29672 * 24 23 22 40 40 H 1.08009 * 119.61597 * 179.97438 * 26 25 24 41 41 H 1.08004 * 120.42246 * 180.02562 * 27 26 25 42 42 H 1.09000 * 110.36947 * 322.93671 * 28 17 15 43 43 H 1.09004 * 110.36683 * 85.14902 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.7003 1.3464 -0.0006 5 1 1.8816 2.3965 -1.2125 6 1 1.8816 2.3965 1.2125 7 6 2.0076 -1.2148 -0.0005 8 1 3.0592 -1.2313 0.2449 9 6 1.3402 -2.4135 -0.3213 10 6 0.2565 -2.4050 -1.2189 11 6 -0.3890 -3.5809 -1.5252 12 6 0.0196 -4.7796 -0.9563 13 6 1.0850 -4.8157 -0.0766 14 6 1.7545 -3.6415 0.2575 15 6 2.8877 -3.6743 1.2000 16 8 2.9512 -2.8621 2.1029 17 7 3.8531 -4.6044 1.0611 18 6 3.8410 -5.7148 0.0976 19 6 5.1585 -6.4968 0.2830 20 6 6.0907 -5.4560 0.9577 21 1 6.5433 -4.7975 0.2165 22 6 7.1479 -6.1363 1.7888 23 6 6.7994 -7.0551 2.7669 24 6 7.7966 -7.6629 3.5060 25 7 9.0653 -7.3699 3.2963 26 6 9.4329 -6.4973 2.3787 27 6 8.4917 -5.8541 1.5973 28 6 5.0935 -4.6804 1.8543 29 1 -0.4850 0.8401 -0.0004 30 1 -0.0679 -1.4772 -1.6665 31 1 -1.2207 -3.5712 -2.2141 32 1 -0.4974 -5.6940 -1.2075 33 1 1.3959 -5.7553 0.3556 34 1 2.9898 -6.3668 0.2940 35 1 3.7840 -5.3235 -0.9182 36 1 5.5627 -6.8097 -0.6797 37 1 5.0041 -7.3562 0.9354 38 1 5.7619 -7.2956 2.9466 39 1 7.5338 -8.3833 4.2665 40 1 10.4818 -6.2827 2.2360 41 1 8.7991 -5.1407 0.8470 42 1 5.4713 -3.6799 2.0646 43 1 4.9167 -5.2215 2.7839 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601584030.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:57 Heat of formation + Delta-G solvation = 21.882805 kcal Electronic energy + Delta-G solvation = -26180.448509 eV Core-core repulsion = 22575.904656 eV Total energy + Delta-G solvation = -3604.543853 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.61652 -39.37506 -37.56924 -36.41613 -33.87603 -33.47697 -31.42475 -30.60902 -29.96806 -29.65933 -28.34602 -25.58858 -24.38279 -23.70130 -22.85928 -21.43973 -21.05145 -20.43272 -18.83994 -17.31749 -17.22789 -16.72673 -16.14453 -15.72656 -15.48041 -15.16871 -14.91956 -14.43001 -14.07901 -13.99581 -13.76113 -13.38102 -13.30674 -13.01915 -12.76821 -12.64602 -12.27171 -12.04780 -11.84566 -11.70841 -11.59962 -11.36625 -11.21971 -11.07734 -10.87151 -10.72594 -10.52083 -9.98332 -9.69160 -9.67590 -9.60181 -9.34999 -9.28100 -8.75508 -8.10515 -7.59024 -7.47512 -6.86309 -4.44839 0.93854 1.03067 2.44420 2.77111 3.05965 3.12796 3.17249 3.51843 3.60082 3.88459 3.91564 4.26259 4.35494 4.46287 4.55881 4.62841 4.77603 4.91527 4.95735 5.02678 5.30019 5.34989 5.44804 5.52953 5.57228 5.66748 5.69468 5.81385 5.85585 5.94646 6.03450 6.06215 6.16820 6.25888 6.30880 6.49078 6.50526 6.86924 6.94527 7.06165 7.17325 7.41352 7.63572 7.77184 7.83184 7.93023 8.10291 8.21805 8.51406 8.74229 8.81793 9.17827 10.09605 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015901 B = 0.003330 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.509609 B = 8405.644557 C = 9663.602917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.077 3.923 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.432 4.432 8 H 0.081 0.919 9 C 0.149 3.851 10 C -0.155 4.155 11 C -0.093 4.093 12 C -0.247 4.247 13 C -0.061 4.061 14 C -0.252 4.252 15 C 0.597 3.403 16 O -0.533 6.533 17 N -0.629 5.629 18 C 0.106 3.894 19 C -0.122 4.122 20 C -0.069 4.069 21 H 0.097 0.903 22 C -0.021 4.021 23 C -0.167 4.167 24 C 0.099 3.901 25 N -0.492 5.492 26 C 0.098 3.902 27 C -0.168 4.168 28 C 0.120 3.880 29 H 0.283 0.717 30 H 0.116 0.884 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.136 0.864 39 H 0.155 0.845 40 H 0.154 0.846 41 H 0.135 0.865 42 H 0.076 0.924 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.786 -11.347 -0.520 16.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.460 4.460 8 H 0.099 0.901 9 C 0.146 3.854 10 C -0.174 4.174 11 C -0.111 4.111 12 C -0.266 4.266 13 C -0.079 4.079 14 C -0.257 4.257 15 C 0.390 3.610 16 O -0.409 6.409 17 N -0.367 5.367 18 C -0.017 4.017 19 C -0.160 4.160 20 C -0.088 4.088 21 H 0.116 0.884 22 C -0.029 4.029 23 C -0.187 4.187 24 C -0.058 4.058 25 N -0.201 5.201 26 C -0.059 4.059 27 C -0.188 4.188 28 C -0.003 4.003 29 H 0.094 0.906 30 H 0.134 0.866 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.154 0.846 39 H 0.172 0.828 40 H 0.172 0.828 41 H 0.153 0.847 42 H 0.094 0.906 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.166 -11.062 0.510 16.451 hybrid contribution -0.443 1.101 -0.477 1.279 sum 11.723 -9.961 0.033 15.383 Atomic orbital electron populations 1.69726 1.07739 1.29605 1.33768 1.25971 0.94743 1.01511 0.91974 0.86201 0.81131 0.80558 0.78578 1.18280 1.19623 1.19716 1.19619 0.97569 0.90613 1.38217 0.90100 1.17357 0.89874 0.90693 0.87507 1.21235 0.99316 0.96648 1.00239 1.20780 0.98187 0.93353 0.98824 1.20256 1.02780 0.96714 1.06874 1.20696 0.95773 0.95227 0.96223 1.19355 1.03374 0.95392 1.07537 1.18255 0.80907 0.77791 0.84023 1.90710 1.77302 1.39226 1.33695 1.48579 1.20400 1.29757 1.37942 1.22045 0.96909 0.88547 0.94229 1.22788 0.94391 0.97385 1.01466 1.21418 0.93396 0.97041 0.96967 0.88435 1.20089 0.94116 0.94235 0.94462 1.22067 1.01421 0.98130 0.97046 1.22749 0.87926 0.97514 0.97594 1.67668 1.19770 1.14882 1.17789 1.22741 1.00056 0.92001 0.91085 1.22099 0.93146 1.01786 1.01777 1.22058 0.84094 1.00515 0.93638 0.90595 0.86624 0.89102 0.89111 0.88842 0.91203 0.91066 0.89892 0.90499 0.84623 0.82804 0.82834 0.84693 0.90570 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.31 11.23 55.56 0.62 -19.68 16 2 C 0.08 1.98 5.15 -17.30 -0.09 1.89 16 3 Si 0.91 19.23 29.59 -169.99 -5.03 14.20 16 4 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.43 -11.72 7.78 -37.81 -0.29 -12.01 16 8 H 0.08 2.24 7.08 -52.49 -0.37 1.87 16 9 C 0.15 3.96 5.52 -106.54 -0.59 3.37 16 10 C -0.16 -3.89 8.65 -38.88 -0.34 -4.23 16 11 C -0.09 -2.06 10.01 -39.60 -0.40 -2.46 16 12 C -0.25 -5.18 10.03 -39.37 -0.39 -5.58 16 13 C -0.06 -1.29 8.52 -39.22 -0.33 -1.62 16 14 C -0.25 -6.11 5.49 -104.37 -0.57 -6.68 16 15 C 0.60 13.91 6.76 -12.52 -0.08 13.82 16 16 O -0.53 -14.39 16.00 5.27 0.08 -14.30 16 17 N -0.63 -11.22 3.33 -171.77 -0.57 -11.79 16 18 C 0.11 1.47 5.58 -3.06 -0.02 1.45 16 19 C -0.12 -1.24 6.36 -24.89 -0.16 -1.40 16 20 C -0.07 -0.76 3.29 -89.62 -0.29 -1.05 16 21 H 0.10 1.04 8.02 -51.93 -0.42 0.63 16 22 C -0.02 -0.21 5.01 -104.32 -0.52 -0.73 16 23 C -0.17 -1.61 8.40 -39.44 -0.33 -1.94 16 24 C 0.10 0.96 11.18 -17.54 -0.20 0.77 16 25 N -0.49 -5.45 10.36 -13.25 -0.14 -5.59 16 26 C 0.10 0.93 11.18 -17.55 -0.20 0.74 16 27 C -0.17 -1.56 9.78 -39.44 -0.39 -1.95 16 28 C 0.12 1.77 6.31 -2.53 -0.02 1.76 16 29 H 0.28 6.61 8.29 -40.82 -0.34 6.27 16 30 H 0.12 2.96 6.54 -52.49 -0.34 2.62 16 31 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 32 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.09 1.71 5.80 -52.49 -0.30 1.40 16 34 H 0.07 0.94 5.97 -51.93 -0.31 0.63 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.69 6.86 -51.93 -0.36 0.34 16 38 H 0.14 1.16 7.17 -52.48 -0.38 0.79 16 39 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.15 1.05 8.06 -52.48 -0.42 0.63 16 41 H 0.14 1.00 8.04 -52.48 -0.42 0.58 16 42 H 0.08 1.24 8.09 -51.93 -0.42 0.82 16 43 H 0.06 0.87 7.13 -51.93 -0.37 0.50 16 LS Contribution 354.37 15.07 5.34 5.34 Total: -1.00 -31.62 354.37 -10.26 -41.88 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -5.36 Total: 5.81 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -5.21 Total: -15.86 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: -0.08 Total: -37.07 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: 0.08 Total: -14.30 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.62 -10.26 -41.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601584030.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.766 kcal (2) G-P(sol) polarization free energy of solvation -31.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds