Wall clock time and date at job start Tue Mar 31 2020 13:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30629 * 1 3 3 Si 1.86798 * 120.00087 * 2 1 4 4 H 1.48495 * 109.47365 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47284 * 300.00031 * 3 2 1 6 6 H 1.48503 * 109.47328 * 59.99880 * 3 2 1 7 7 C 1.40275 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99882 * 195.21250 * 7 2 1 9 9 C 1.40894 * 120.00020 * 15.21498 * 7 2 1 10 10 C 1.40711 * 120.32551 * 30.74180 * 9 7 2 11 11 C 1.37598 * 119.87783 * 180.02562 * 10 9 7 12 12 C 1.38829 * 120.56981 * 359.97438 * 11 10 9 13 13 C 1.38219 * 120.67720 * 359.72545 * 12 11 10 14 14 C 1.39227 * 120.08971 * 0.55507 * 13 12 11 15 15 C 1.47431 * 120.28015 * 179.72240 * 14 13 12 16 16 O 1.21613 * 120.00023 * 226.54086 * 15 14 13 17 17 N 1.34779 * 120.00075 * 46.54272 * 15 14 13 18 18 C 1.47017 * 125.65014 * 354.10652 * 17 15 14 19 19 C 1.54332 * 107.27018 * 178.84704 * 18 17 15 20 20 C 1.55156 * 103.01843 * 338.13785 * 19 18 17 21 21 H 1.08993 * 111.03967 * 277.21724 * 20 19 18 22 22 C 1.50704 * 111.00560 * 153.37835 * 20 19 18 23 23 C 1.38647 * 120.78750 * 306.07376 * 22 20 19 24 24 C 1.38207 * 119.16178 * 179.75519 * 23 22 20 25 25 N 1.31879 * 120.75979 * 0.52505 * 24 23 22 26 26 C 1.31860 * 121.72407 * 359.74740 * 25 24 23 27 27 C 1.38201 * 120.76888 * 359.97211 * 26 25 24 28 28 C 1.47426 * 125.64765 * 174.40653 * 17 15 14 29 29 H 0.97003 * 119.99999 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.05876 * 0.02562 * 10 9 7 31 31 H 1.07997 * 119.71287 * 179.97438 * 11 10 9 32 32 H 1.08002 * 119.66083 * 180.02562 * 12 11 10 33 33 H 1.07997 * 119.95792 * 180.27929 * 13 12 11 34 34 H 1.09001 * 109.88440 * 298.39485 * 18 17 15 35 35 H 1.09000 * 109.88330 * 59.55308 * 18 17 15 36 36 H 1.08998 * 110.85165 * 219.66951 * 19 18 17 37 37 H 1.08998 * 110.51725 * 96.44538 * 19 18 17 38 38 H 1.08007 * 120.42390 * 359.97438 * 23 22 20 39 39 H 1.08001 * 119.62403 * 180.29672 * 24 23 22 40 40 H 1.08009 * 119.61597 * 179.97438 * 26 25 24 41 41 H 1.08004 * 120.42246 * 180.02562 * 27 26 25 42 42 H 1.09000 * 110.36947 * 322.93671 * 28 17 15 43 43 H 1.09004 * 110.36683 * 85.14902 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.7003 1.3464 -0.0006 5 1 1.8816 2.3965 -1.2125 6 1 1.8816 2.3965 1.2125 7 6 2.0076 -1.2148 -0.0005 8 1 3.0592 -1.2313 0.2449 9 6 1.3402 -2.4135 -0.3213 10 6 0.2565 -2.4050 -1.2189 11 6 -0.3890 -3.5809 -1.5252 12 6 0.0196 -4.7796 -0.9563 13 6 1.0850 -4.8157 -0.0766 14 6 1.7545 -3.6415 0.2575 15 6 2.8877 -3.6743 1.2000 16 8 2.9512 -2.8621 2.1029 17 7 3.8531 -4.6044 1.0611 18 6 3.8410 -5.7148 0.0976 19 6 5.1585 -6.4968 0.2830 20 6 6.0907 -5.4560 0.9577 21 1 6.5433 -4.7975 0.2165 22 6 7.1479 -6.1363 1.7888 23 6 6.7994 -7.0551 2.7669 24 6 7.7966 -7.6629 3.5060 25 7 9.0653 -7.3699 3.2963 26 6 9.4329 -6.4973 2.3787 27 6 8.4917 -5.8541 1.5973 28 6 5.0935 -4.6804 1.8543 29 1 -0.4850 0.8401 -0.0004 30 1 -0.0679 -1.4772 -1.6665 31 1 -1.2207 -3.5712 -2.2141 32 1 -0.4974 -5.6940 -1.2075 33 1 1.3959 -5.7553 0.3556 34 1 2.9898 -6.3668 0.2940 35 1 3.7840 -5.3235 -0.9182 36 1 5.5627 -6.8097 -0.6797 37 1 5.0041 -7.3562 0.9354 38 1 5.7619 -7.2956 2.9466 39 1 7.5338 -8.3833 4.2665 40 1 10.4818 -6.2827 2.2360 41 1 8.7991 -5.1407 0.8470 42 1 5.4713 -3.6799 2.0646 43 1 4.9167 -5.2215 2.7839 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601584030.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:57 Heat of formation + Delta-G solvation = 4.116875 kcal Electronic energy + Delta-G solvation = -26181.218898 eV Core-core repulsion = 22575.904656 eV Total energy + Delta-G solvation = -3605.314242 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.54860 -40.74574 -39.07067 -38.09071 -35.65323 -34.64585 -32.19567 -32.02963 -31.64708 -31.11002 -29.54185 -27.40443 -25.67523 -24.51952 -23.89734 -22.95422 -22.80591 -21.40139 -20.42374 -19.13837 -18.16763 -18.10860 -17.22857 -17.10221 -16.61899 -16.49529 -16.33048 -16.06819 -15.48330 -14.88863 -14.75120 -14.67843 -14.55046 -14.38793 -14.27271 -14.00372 -13.81503 -13.53125 -13.30556 -13.04934 -12.88722 -12.72177 -12.64083 -12.54624 -12.32904 -12.24370 -11.84319 -11.65277 -11.41193 -11.13903 -10.63397 -10.40832 -10.40247 -10.05116 -9.62882 -9.37038 -9.31854 -8.72885 -6.41208 0.23873 0.26814 0.62447 0.99315 1.30460 1.44627 1.45761 1.98750 2.16388 2.23013 2.69377 2.85158 3.43664 3.58300 3.60026 3.64039 3.66249 3.95537 4.11216 4.17326 4.23778 4.25588 4.28485 4.39868 4.43529 4.59069 4.64867 4.75026 4.81856 4.85427 4.86861 4.94748 5.01290 5.06541 5.07802 5.15774 5.20300 5.32798 5.45787 5.49875 5.59308 5.80588 5.84598 5.98331 6.08806 6.27699 6.52707 6.66608 6.84266 6.92718 7.06016 7.43862 8.25666 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015901 B = 0.003330 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.509609 B = 8405.644557 C = 9663.602917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.038 3.962 3 Si 0.976 3.024 4 H -0.267 1.267 5 H -0.250 1.250 6 H -0.268 1.268 7 C -0.471 4.471 8 H 0.056 0.944 9 C 0.118 3.882 10 C -0.181 4.181 11 C -0.091 4.091 12 C -0.234 4.234 13 C -0.058 4.058 14 C -0.267 4.267 15 C 0.589 3.411 16 O -0.587 6.587 17 N -0.624 5.624 18 C 0.098 3.902 19 C -0.108 4.108 20 C -0.054 4.054 21 H 0.100 0.900 22 C -0.030 4.030 23 C -0.169 4.169 24 C 0.090 3.910 25 N -0.516 5.516 26 C 0.090 3.910 27 C -0.169 4.169 28 C 0.115 3.885 29 H 0.291 0.709 30 H 0.099 0.901 31 H 0.120 0.880 32 H 0.133 0.867 33 H 0.128 0.872 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.147 0.853 39 H 0.174 0.826 40 H 0.176 0.824 41 H 0.152 0.848 42 H 0.050 0.950 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.451 -13.937 -1.367 18.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.178 4.178 3 Si 0.796 3.204 4 H -0.191 1.191 5 H -0.174 1.174 6 H -0.193 1.193 7 C -0.500 4.500 8 H 0.074 0.926 9 C 0.114 3.886 10 C -0.201 4.201 11 C -0.110 4.110 12 C -0.253 4.253 13 C -0.076 4.076 14 C -0.272 4.272 15 C 0.382 3.618 16 O -0.468 6.468 17 N -0.359 5.359 18 C -0.024 4.024 19 C -0.145 4.145 20 C -0.073 4.073 21 H 0.118 0.882 22 C -0.038 4.038 23 C -0.189 4.189 24 C -0.066 4.066 25 N -0.225 5.225 26 C -0.066 4.066 27 C -0.189 4.189 28 C -0.008 4.008 29 H 0.102 0.898 30 H 0.117 0.883 31 H 0.138 0.862 32 H 0.151 0.849 33 H 0.146 0.854 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.127 0.873 37 H 0.114 0.886 38 H 0.165 0.835 39 H 0.191 0.809 40 H 0.193 0.807 41 H 0.170 0.830 42 H 0.069 0.931 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.851 -13.715 -0.372 18.798 hybrid contribution -0.646 1.673 -0.204 1.804 sum 12.205 -12.042 -0.576 17.156 Atomic orbital electron populations 1.69747 1.08718 1.30774 1.35026 1.26697 0.95579 1.04245 0.91292 0.85264 0.79126 0.76586 0.79375 1.19142 1.17390 1.19264 1.19595 0.96789 0.92409 1.41208 0.92559 1.17717 0.90889 0.91574 0.88384 1.21199 1.00269 0.97400 1.01200 1.21154 0.98279 0.92813 0.98708 1.20768 1.01820 0.97687 1.05009 1.21057 0.95196 0.95514 0.95827 1.19690 1.04208 0.95909 1.07380 1.18251 0.81876 0.78300 0.83384 1.90663 1.78708 1.41635 1.35809 1.48471 1.19848 1.29179 1.38389 1.22331 0.99752 0.87574 0.92753 1.22790 0.91683 0.96861 1.03182 1.21261 0.92865 0.96900 0.96248 0.88163 1.20041 0.94151 0.94738 0.94913 1.22208 1.02028 0.97873 0.96763 1.23115 0.87614 0.97838 0.97997 1.67701 1.20547 1.15701 1.18580 1.23148 1.01303 0.91532 0.90614 1.22316 0.92810 1.01778 1.01988 1.22243 0.83767 1.00072 0.94721 0.89816 0.88251 0.86159 0.84927 0.85391 0.90072 0.91805 0.87317 0.88573 0.83526 0.80851 0.80664 0.82999 0.93093 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.18 11.23 21.88 0.25 -43.93 16 2 C 0.04 2.02 5.15 85.37 0.44 2.46 16 3 Si 0.98 41.22 29.59 68.60 2.03 43.25 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 6 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 7 C -0.47 -27.22 7.78 23.42 0.18 -27.04 16 8 H 0.06 3.39 7.08 -2.91 -0.02 3.37 16 9 C 0.12 6.50 5.52 -21.11 -0.12 6.39 16 10 C -0.18 -9.33 8.65 22.72 0.20 -9.13 16 11 C -0.09 -3.92 10.01 22.26 0.22 -3.70 16 12 C -0.23 -9.07 10.03 22.41 0.22 -8.84 16 13 C -0.06 -2.33 8.52 22.50 0.19 -2.14 16 14 C -0.27 -13.18 5.49 -19.70 -0.11 -13.29 16 15 C 0.59 28.37 6.76 86.66 0.59 28.96 16 16 O -0.59 -33.58 16.00 -4.07 -0.07 -33.65 16 17 N -0.62 -22.20 3.33 -815.62 -2.71 -24.91 16 18 C 0.10 2.49 5.58 86.73 0.48 2.98 16 19 C -0.11 -1.81 6.36 31.79 0.20 -1.61 16 20 C -0.05 -1.07 3.29 -10.15 -0.03 -1.11 16 21 H 0.10 1.97 8.02 -2.39 -0.02 1.95 16 22 C -0.03 -0.54 5.01 -19.67 -0.10 -0.64 16 23 C -0.17 -2.87 8.40 22.36 0.19 -2.68 16 24 C 0.09 1.58 11.18 84.68 0.95 2.52 16 25 N -0.52 -10.50 10.36 -195.84 -2.03 -12.53 16 26 C 0.09 1.54 11.18 84.68 0.95 2.48 16 27 C -0.17 -2.77 9.78 22.36 0.22 -2.56 16 28 C 0.11 3.36 6.31 86.86 0.55 3.91 16 29 H 0.29 14.09 8.29 -92.71 -0.77 13.32 16 30 H 0.10 5.33 6.54 -2.91 -0.02 5.31 16 31 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 32 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 33 H 0.13 4.23 5.80 -2.91 -0.02 4.21 16 34 H 0.08 1.90 5.97 -2.39 -0.01 1.89 16 35 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.10 1.32 6.86 -2.39 -0.02 1.30 16 38 H 0.15 2.09 7.17 -2.91 -0.02 2.07 16 39 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 40 H 0.18 2.02 8.06 -2.91 -0.02 1.99 16 41 H 0.15 1.89 8.04 -2.91 -0.02 1.86 16 42 H 0.05 1.74 8.09 -2.39 -0.02 1.72 16 43 H 0.07 1.94 7.13 -2.38 -0.02 1.92 16 Total: -1.00 -73.90 354.37 3.72 -70.18 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 1.03 Total: 24.64 kcal Atomic # 6 Polarization: -28.26 SS G_CDS: 5.22 Total: -23.04 kcal Atomic # 7 Polarization: -76.88 SS G_CDS: -4.50 Total: -81.37 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -0.07 Total: -33.65 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -73.90 3.72 -70.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601584030.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.299 kcal (2) G-P(sol) polarization free energy of solvation -73.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds