Wall clock time and date at job start Tue Mar 31 2020 13:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30629 * 1 3 3 Si 1.86802 * 119.99969 * 2 1 4 4 H 1.48500 * 109.47155 * 240.00563 * 3 2 1 5 5 H 1.48503 * 109.46976 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47122 * 120.00162 * 3 2 1 7 7 C 1.40270 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00432 * 180.96720 * 7 2 1 9 9 C 1.40894 * 119.99808 * 0.95778 * 7 2 1 10 10 C 1.40706 * 120.32970 * 326.52106 * 9 7 2 11 11 C 1.37595 * 119.88261 * 180.02562 * 10 9 7 12 12 C 1.38834 * 120.56773 * 0.02562 * 11 10 9 13 13 C 1.38213 * 120.67628 * 359.97438 * 12 11 10 14 14 C 1.39224 * 120.09719 * 359.97438 * 13 12 11 15 15 C 1.47425 * 120.28644 * 180.02562 * 14 13 12 16 16 O 1.21612 * 119.99909 * 136.22833 * 15 14 13 17 17 N 1.34774 * 120.00227 * 316.23652 * 15 14 13 18 18 C 1.47027 * 125.64860 * 354.66954 * 17 15 14 19 19 C 1.54320 * 107.27364 * 181.02089 * 18 17 15 20 20 C 1.55160 * 102.94104 * 22.19701 * 19 18 17 21 21 H 1.09005 * 111.00421 * 82.56719 * 20 19 18 22 22 C 1.50699 * 111.00562 * 206.38284 * 20 19 18 23 23 C 1.38651 * 120.78687 * 59.71609 * 22 20 19 24 24 C 1.38203 * 119.15896 * 179.75776 * 23 22 20 25 25 N 1.31872 * 120.76769 * 0.52820 * 24 23 22 26 26 C 1.31870 * 121.72091 * 359.74672 * 25 24 23 27 27 C 1.38202 * 120.76669 * 359.97290 * 26 25 24 28 28 C 1.47429 * 125.65130 * 174.36524 * 17 15 14 29 29 H 0.97000 * 119.99900 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.05610 * 359.97438 * 10 9 7 31 31 H 1.07994 * 119.71782 * 179.72213 * 11 10 9 32 32 H 1.07995 * 119.65934 * 179.97438 * 12 11 10 33 33 H 1.08002 * 119.95289 * 180.02562 * 13 12 11 34 34 H 1.09001 * 109.88003 * 300.44496 * 18 17 15 35 35 H 1.09004 * 109.87637 * 61.45328 * 18 17 15 36 36 H 1.08997 * 110.72032 * 140.55575 * 19 18 17 37 37 H 1.08994 * 110.72385 * 263.65401 * 19 18 17 38 38 H 1.07994 * 120.42062 * 0.02562 * 23 22 20 39 39 H 1.08007 * 119.61761 * 180.29678 * 24 23 22 40 40 H 1.08005 * 119.61868 * 179.97438 * 26 25 24 41 41 H 1.07997 * 120.41737 * 179.97438 * 27 26 25 42 42 H 1.09006 * 110.36540 * 274.74409 * 28 17 15 43 43 H 1.09004 * 110.36748 * 37.06588 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0939 1.6965 -1.2126 5 1 1.2752 2.7465 0.0006 6 1 3.0941 1.6964 1.2125 7 6 2.0077 -1.2147 -0.0005 8 1 3.0875 -1.2148 0.0152 9 6 1.3034 -2.4348 -0.0215 10 6 0.0613 -2.5495 0.6296 11 6 -0.6184 -3.7456 0.6037 12 6 -0.0892 -4.8442 -0.0599 13 6 1.1290 -4.7576 -0.7071 14 6 1.8400 -3.5606 -0.6996 15 6 3.1394 -3.4633 -1.3891 16 8 3.3941 -2.4898 -2.0719 17 7 4.0451 -4.4534 -1.2627 18 6 3.9149 -5.6272 -0.3870 19 6 5.1981 -6.4681 -0.5541 20 6 6.2247 -5.4335 -1.0862 21 1 6.6592 -4.8582 -0.2687 22 6 7.2995 -6.1081 -1.8991 23 6 6.9790 -6.8343 -3.0359 24 6 7.9921 -7.4350 -3.7590 25 7 9.2489 -7.3320 -3.3732 26 6 9.5897 -6.6542 -2.2946 27 6 8.6317 -6.0221 -1.5247 28 6 5.3276 -4.5420 -1.9845 29 1 -0.4850 0.8400 0.0004 30 1 -0.3574 -1.7004 1.1493 31 1 -1.5694 -3.8319 1.1081 32 1 -0.6350 -5.7760 -0.0706 33 1 1.5295 -5.6194 -1.2202 34 1 3.8141 -5.3066 0.6500 35 1 3.0440 -6.2135 -0.6800 36 1 5.5210 -6.8736 0.4047 37 1 5.0431 -7.2687 -1.2772 38 1 5.9513 -6.9258 -3.3547 39 1 7.7513 -7.9984 -4.6485 40 1 10.6296 -6.5923 -2.0095 41 1 8.9171 -5.4689 -0.6422 42 1 5.1826 -5.0066 -2.9599 43 1 5.7689 -3.5517 -2.0969 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601584031.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:01 Heat of formation + Delta-G solvation = 23.539535 kcal Electronic energy + Delta-G solvation = -26178.525267 eV Core-core repulsion = 22574.053254 eV Total energy + Delta-G solvation = -3604.472012 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.61875 -39.37682 -37.57148 -36.41327 -33.86125 -33.46322 -31.42705 -30.62163 -29.96131 -29.59646 -28.33208 -25.58836 -24.41700 -23.66330 -22.85184 -21.45588 -20.99140 -20.45696 -18.83955 -17.33941 -17.21844 -16.71357 -16.16222 -15.73923 -15.48570 -15.12657 -14.83885 -14.41002 -14.08851 -14.01391 -13.78843 -13.37781 -13.28950 -12.97571 -12.78348 -12.62212 -12.23456 -12.10781 -11.83097 -11.71274 -11.58683 -11.34160 -11.14218 -11.06361 -10.84923 -10.73223 -10.48642 -9.96067 -9.73496 -9.69073 -9.61068 -9.35599 -9.29541 -8.74746 -8.10118 -7.58135 -7.40827 -6.74569 -4.46401 0.93328 1.02665 2.41762 2.81349 3.07345 3.10982 3.24163 3.52594 3.59184 3.90344 3.95510 4.25785 4.34638 4.47062 4.59480 4.63645 4.77280 4.91106 4.95558 5.02386 5.29551 5.34432 5.44279 5.53700 5.57431 5.65419 5.69760 5.81200 5.87153 5.93402 6.04265 6.05617 6.16666 6.25206 6.31747 6.48343 6.49901 6.86236 6.97888 7.08271 7.22960 7.43765 7.63155 7.76713 7.89033 7.94471 8.10857 8.23581 8.54848 8.78164 8.83376 9.17692 10.15788 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016412 B = 0.003292 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.662903 B = 8504.483552 C = 9741.423536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.427 4.427 8 H 0.078 0.922 9 C 0.144 3.856 10 C -0.151 4.151 11 C -0.097 4.097 12 C -0.242 4.242 13 C -0.064 4.064 14 C -0.249 4.249 15 C 0.595 3.405 16 O -0.533 6.533 17 N -0.630 5.630 18 C 0.105 3.895 19 C -0.121 4.121 20 C -0.069 4.069 21 H 0.097 0.903 22 C -0.020 4.020 23 C -0.167 4.167 24 C 0.099 3.901 25 N -0.492 5.492 26 C 0.098 3.902 27 C -0.169 4.169 28 C 0.118 3.882 29 H 0.282 0.718 30 H 0.131 0.869 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.136 0.864 39 H 0.155 0.845 40 H 0.154 0.846 41 H 0.135 0.865 42 H 0.062 0.938 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.370 -11.888 -0.156 16.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.456 4.456 8 H 0.096 0.904 9 C 0.140 3.860 10 C -0.170 4.170 11 C -0.116 4.116 12 C -0.261 4.261 13 C -0.082 4.082 14 C -0.253 4.253 15 C 0.389 3.611 16 O -0.409 6.409 17 N -0.367 5.367 18 C -0.018 4.018 19 C -0.159 4.159 20 C -0.088 4.088 21 H 0.116 0.884 22 C -0.029 4.029 23 C -0.187 4.187 24 C -0.058 4.058 25 N -0.201 5.201 26 C -0.059 4.059 27 C -0.188 4.188 28 C -0.005 4.005 29 H 0.093 0.907 30 H 0.148 0.852 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.154 0.846 39 H 0.172 0.828 40 H 0.172 0.828 41 H 0.153 0.847 42 H 0.080 0.920 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 11.874 -11.493 -1.038 16.558 hybrid contribution -0.417 1.044 0.414 1.198 sum 11.458 -10.449 -0.624 15.519 Atomic orbital electron populations 1.69648 1.07534 1.29415 1.35837 1.25957 0.94904 1.01516 0.92035 0.86196 0.79954 0.79497 0.80156 1.18610 1.20256 1.18893 1.19540 0.94841 0.89867 1.41360 0.90418 1.17438 0.91277 0.90608 0.86653 1.21584 0.96953 0.96494 1.01992 1.20858 0.98027 0.93877 0.98809 1.20308 0.98531 0.98156 1.09127 1.20662 0.95108 0.94846 0.97620 1.19442 0.97240 0.97176 1.11456 1.18263 0.83258 0.79684 0.79897 1.90712 1.78850 1.30491 1.40836 1.48567 1.19349 1.23973 1.44843 1.22046 0.97298 0.86992 0.95490 1.22762 0.93929 0.97137 1.02091 1.21456 0.93195 0.96564 0.97603 0.88446 1.20095 0.94171 0.94357 0.94271 1.22072 1.01414 0.99099 0.96116 1.22750 0.87879 0.96425 0.98698 1.67671 1.20556 1.16656 1.15236 1.22742 0.99907 0.92783 0.90457 1.22090 0.93123 1.01814 1.01819 1.22133 0.84109 0.99886 0.94386 0.90674 0.85152 0.89063 0.89117 0.88854 0.91273 0.90935 0.89960 0.90492 0.84603 0.82796 0.82843 0.84718 0.91953 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.66 10.63 55.56 0.59 -20.07 16 2 C 0.07 1.89 5.40 -17.30 -0.09 1.79 16 3 Si 0.92 19.72 29.56 -169.99 -5.03 14.69 16 4 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.43 -11.63 7.67 -37.81 -0.29 -11.92 16 8 H 0.08 2.15 7.09 -52.49 -0.37 1.78 16 9 C 0.14 3.82 5.57 -106.54 -0.59 3.23 16 10 C -0.15 -3.80 8.65 -38.88 -0.34 -4.14 16 11 C -0.10 -2.16 10.01 -39.60 -0.40 -2.56 16 12 C -0.24 -5.06 10.03 -39.37 -0.39 -5.46 16 13 C -0.06 -1.35 8.42 -39.22 -0.33 -1.68 16 14 C -0.25 -6.00 5.45 -104.37 -0.57 -6.57 16 15 C 0.60 13.81 6.84 -12.52 -0.09 13.72 16 16 O -0.53 -14.29 15.78 5.27 0.08 -14.21 16 17 N -0.63 -11.17 3.32 -171.63 -0.57 -11.74 16 18 C 0.11 1.46 5.89 -3.06 -0.02 1.44 16 19 C -0.12 -1.23 6.36 -24.90 -0.16 -1.39 16 20 C -0.07 -0.75 3.30 -89.50 -0.30 -1.05 16 21 H 0.10 1.04 8.03 -51.93 -0.42 0.62 16 22 C -0.02 -0.21 5.01 -104.32 -0.52 -0.73 16 23 C -0.17 -1.62 8.43 -39.44 -0.33 -1.95 16 24 C 0.10 0.96 11.18 -17.55 -0.20 0.77 16 25 N -0.49 -5.43 10.36 -13.25 -0.14 -5.57 16 26 C 0.10 0.92 11.18 -17.55 -0.20 0.73 16 27 C -0.17 -1.55 9.78 -39.44 -0.39 -1.93 16 28 C 0.12 1.72 6.35 -2.41 -0.02 1.71 16 29 H 0.28 6.67 8.29 -40.82 -0.34 6.33 16 30 H 0.13 3.38 6.16 -52.49 -0.32 3.06 16 31 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 33 H 0.09 1.71 6.05 -52.49 -0.32 1.39 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.07 0.99 5.67 -51.93 -0.29 0.70 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.70 7.27 -51.93 -0.38 0.33 16 38 H 0.14 1.17 7.15 -52.49 -0.38 0.80 16 39 H 0.15 1.12 8.06 -52.48 -0.42 0.70 16 40 H 0.15 1.04 8.06 -52.48 -0.42 0.62 16 41 H 0.13 0.97 8.04 -52.49 -0.42 0.55 16 42 H 0.06 0.86 6.74 -51.93 -0.35 0.51 16 43 H 0.08 1.25 7.99 -51.93 -0.41 0.84 16 LS Contribution 353.53 15.07 5.33 5.33 Total: -1.00 -31.41 353.53 -10.28 -41.69 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.34 Total: 5.87 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -5.21 Total: -15.99 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: -0.12 Total: -37.38 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: 0.08 Total: -14.21 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.03 Total: 14.69 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.41 -10.28 -41.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601584031.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.227 kcal (2) G-P(sol) polarization free energy of solvation -31.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds