Wall clock time and date at job start Tue Mar 31 2020 13:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30629 * 1 3 3 Si 1.86802 * 119.99969 * 2 1 4 4 H 1.48500 * 109.47155 * 240.00563 * 3 2 1 5 5 H 1.48503 * 109.46976 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47122 * 120.00162 * 3 2 1 7 7 C 1.40270 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00432 * 180.96720 * 7 2 1 9 9 C 1.40894 * 119.99808 * 0.95778 * 7 2 1 10 10 C 1.40706 * 120.32970 * 326.52106 * 9 7 2 11 11 C 1.37595 * 119.88261 * 180.02562 * 10 9 7 12 12 C 1.38834 * 120.56773 * 0.02562 * 11 10 9 13 13 C 1.38213 * 120.67628 * 359.97438 * 12 11 10 14 14 C 1.39224 * 120.09719 * 359.97438 * 13 12 11 15 15 C 1.47425 * 120.28644 * 180.02562 * 14 13 12 16 16 O 1.21612 * 119.99909 * 136.22833 * 15 14 13 17 17 N 1.34774 * 120.00227 * 316.23652 * 15 14 13 18 18 C 1.47027 * 125.64860 * 354.66954 * 17 15 14 19 19 C 1.54320 * 107.27364 * 181.02089 * 18 17 15 20 20 C 1.55160 * 102.94104 * 22.19701 * 19 18 17 21 21 H 1.09005 * 111.00421 * 82.56719 * 20 19 18 22 22 C 1.50699 * 111.00562 * 206.38284 * 20 19 18 23 23 C 1.38651 * 120.78687 * 59.71609 * 22 20 19 24 24 C 1.38203 * 119.15896 * 179.75776 * 23 22 20 25 25 N 1.31872 * 120.76769 * 0.52820 * 24 23 22 26 26 C 1.31870 * 121.72091 * 359.74672 * 25 24 23 27 27 C 1.38202 * 120.76669 * 359.97290 * 26 25 24 28 28 C 1.47429 * 125.65130 * 174.36524 * 17 15 14 29 29 H 0.97000 * 119.99900 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.05610 * 359.97438 * 10 9 7 31 31 H 1.07994 * 119.71782 * 179.72213 * 11 10 9 32 32 H 1.07995 * 119.65934 * 179.97438 * 12 11 10 33 33 H 1.08002 * 119.95289 * 180.02562 * 13 12 11 34 34 H 1.09001 * 109.88003 * 300.44496 * 18 17 15 35 35 H 1.09004 * 109.87637 * 61.45328 * 18 17 15 36 36 H 1.08997 * 110.72032 * 140.55575 * 19 18 17 37 37 H 1.08994 * 110.72385 * 263.65401 * 19 18 17 38 38 H 1.07994 * 120.42062 * 0.02562 * 23 22 20 39 39 H 1.08007 * 119.61761 * 180.29678 * 24 23 22 40 40 H 1.08005 * 119.61868 * 179.97438 * 26 25 24 41 41 H 1.07997 * 120.41737 * 179.97438 * 27 26 25 42 42 H 1.09006 * 110.36540 * 274.74409 * 28 17 15 43 43 H 1.09004 * 110.36748 * 37.06588 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0939 1.6965 -1.2126 5 1 1.2752 2.7465 0.0006 6 1 3.0941 1.6964 1.2125 7 6 2.0077 -1.2147 -0.0005 8 1 3.0875 -1.2148 0.0152 9 6 1.3034 -2.4348 -0.0215 10 6 0.0613 -2.5495 0.6296 11 6 -0.6184 -3.7456 0.6037 12 6 -0.0892 -4.8442 -0.0599 13 6 1.1290 -4.7576 -0.7071 14 6 1.8400 -3.5606 -0.6996 15 6 3.1394 -3.4633 -1.3891 16 8 3.3941 -2.4898 -2.0719 17 7 4.0451 -4.4534 -1.2627 18 6 3.9149 -5.6272 -0.3870 19 6 5.1981 -6.4681 -0.5541 20 6 6.2247 -5.4335 -1.0862 21 1 6.6592 -4.8582 -0.2687 22 6 7.2995 -6.1081 -1.8991 23 6 6.9790 -6.8343 -3.0359 24 6 7.9921 -7.4350 -3.7590 25 7 9.2489 -7.3320 -3.3732 26 6 9.5897 -6.6542 -2.2946 27 6 8.6317 -6.0221 -1.5247 28 6 5.3276 -4.5420 -1.9845 29 1 -0.4850 0.8400 0.0004 30 1 -0.3574 -1.7004 1.1493 31 1 -1.5694 -3.8319 1.1081 32 1 -0.6350 -5.7760 -0.0706 33 1 1.5295 -5.6194 -1.2202 34 1 3.8141 -5.3066 0.6500 35 1 3.0440 -6.2135 -0.6800 36 1 5.5210 -6.8736 0.4047 37 1 5.0431 -7.2687 -1.2772 38 1 5.9513 -6.9258 -3.3547 39 1 7.7513 -7.9984 -4.6485 40 1 10.6296 -6.5923 -2.0095 41 1 8.9171 -5.4689 -0.6422 42 1 5.1826 -5.0066 -2.9599 43 1 5.7689 -3.5517 -2.0969 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601584031.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:00 Heat of formation + Delta-G solvation = 6.072284 kcal Electronic energy + Delta-G solvation = -26179.282703 eV Core-core repulsion = 22574.053254 eV Total energy + Delta-G solvation = -3605.229449 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.54402 -40.74378 -39.07126 -38.08160 -35.63396 -34.63730 -32.18986 -32.02830 -31.61039 -31.09419 -29.51813 -27.40570 -25.69088 -24.48518 -23.88619 -22.96914 -22.75766 -21.41234 -20.41808 -19.15065 -18.15153 -18.11008 -17.24316 -17.10774 -16.57951 -16.47145 -16.25843 -16.05695 -15.50359 -14.87777 -14.79643 -14.64517 -14.56126 -14.37713 -14.23301 -14.00281 -13.82763 -13.50069 -13.32474 -12.94058 -12.88734 -12.68234 -12.66973 -12.55913 -12.32537 -12.22394 -11.83643 -11.66576 -11.46172 -11.17573 -10.61116 -10.41768 -10.39028 -10.04957 -9.62985 -9.34276 -9.26012 -8.62343 -6.43506 0.24035 0.27320 0.59632 1.01944 1.29758 1.40516 1.48949 2.01934 2.17221 2.22867 2.74563 2.85269 3.43842 3.56989 3.61493 3.64245 3.66144 3.95572 4.11822 4.18333 4.22840 4.26449 4.29174 4.39245 4.43202 4.61418 4.65718 4.75471 4.80643 4.87578 4.87838 4.94643 5.01471 5.07148 5.08146 5.15487 5.24057 5.34060 5.45982 5.52573 5.60701 5.80794 5.84297 6.03286 6.10653 6.28653 6.53897 6.68780 6.87225 6.93590 7.06268 7.44419 8.29715 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016412 B = 0.003292 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.662903 B = 8504.483552 C = 9741.423536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.033 3.967 3 Si 0.977 3.023 4 H -0.278 1.278 5 H -0.257 1.257 6 H -0.254 1.254 7 C -0.465 4.465 8 H 0.055 0.945 9 C 0.111 3.889 10 C -0.178 4.178 11 C -0.095 4.095 12 C -0.228 4.228 13 C -0.060 4.060 14 C -0.262 4.262 15 C 0.587 3.413 16 O -0.586 6.586 17 N -0.625 5.625 18 C 0.097 3.903 19 C -0.106 4.106 20 C -0.054 4.054 21 H 0.100 0.900 22 C -0.029 4.029 23 C -0.170 4.170 24 C 0.090 3.910 25 N -0.516 5.516 26 C 0.090 3.910 27 C -0.169 4.169 28 C 0.112 3.888 29 H 0.289 0.711 30 H 0.113 0.887 31 H 0.120 0.880 32 H 0.133 0.867 33 H 0.128 0.872 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.146 0.854 39 H 0.174 0.826 40 H 0.177 0.823 41 H 0.153 0.847 42 H 0.074 0.926 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.901 -14.664 0.144 18.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.181 4.181 3 Si 0.798 3.202 4 H -0.203 1.203 5 H -0.180 1.180 6 H -0.178 1.178 7 C -0.495 4.495 8 H 0.073 0.927 9 C 0.108 3.892 10 C -0.197 4.197 11 C -0.114 4.114 12 C -0.247 4.247 13 C -0.078 4.078 14 C -0.267 4.267 15 C 0.381 3.619 16 O -0.466 6.466 17 N -0.359 5.359 18 C -0.025 4.025 19 C -0.144 4.144 20 C -0.073 4.073 21 H 0.118 0.882 22 C -0.038 4.038 23 C -0.190 4.190 24 C -0.066 4.066 25 N -0.226 5.226 26 C -0.066 4.066 27 C -0.188 4.188 28 C -0.010 4.010 29 H 0.100 0.900 30 H 0.131 0.869 31 H 0.138 0.862 32 H 0.151 0.849 33 H 0.146 0.854 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.126 0.874 37 H 0.114 0.886 38 H 0.164 0.836 39 H 0.191 0.809 40 H 0.194 0.806 41 H 0.171 0.829 42 H 0.092 0.908 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.416 -14.335 -0.706 18.978 hybrid contribution -0.570 1.671 0.282 1.787 sum 11.847 -12.664 -0.423 17.347 Atomic orbital electron populations 1.69689 1.08314 1.30377 1.36922 1.26655 0.95792 1.04065 0.91552 0.85332 0.78937 0.76327 0.79567 1.20325 1.18016 1.17825 1.19535 0.93883 0.91551 1.44517 0.92714 1.17790 0.92321 0.91391 0.87732 1.21526 0.97430 0.97521 1.03253 1.21217 0.98754 0.93080 0.98303 1.20812 0.98057 0.99119 1.06742 1.21016 0.94931 0.94751 0.97148 1.19764 0.98242 0.97725 1.10935 1.18251 0.84026 0.80192 0.79475 1.90667 1.79918 1.32816 1.43245 1.48456 1.19196 1.23589 1.44671 1.22318 0.99996 0.85956 0.94194 1.22757 0.91179 0.96454 1.03995 1.21300 0.93033 0.96080 0.96871 0.88175 1.20043 0.94224 0.94896 0.94633 1.22201 1.01962 0.98876 0.95934 1.23103 0.87583 0.96525 0.99344 1.67703 1.21293 1.17476 1.16088 1.23157 1.01158 0.92263 0.90010 1.22309 0.92683 1.01505 1.02337 1.22330 0.83297 0.99714 0.95679 0.90048 0.86876 0.86179 0.84906 0.85413 0.92117 0.89995 0.87423 0.88612 0.83633 0.80916 0.80641 0.82907 0.90786 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.58 10.63 21.88 0.23 -44.35 16 2 C 0.03 1.80 5.40 85.37 0.46 2.26 16 3 Si 0.98 42.25 29.56 68.60 2.03 44.28 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 5 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 6 H -0.25 -10.42 7.11 99.48 0.71 -9.71 16 7 C -0.47 -26.96 7.67 23.41 0.18 -26.78 16 8 H 0.05 3.28 7.09 -2.91 -0.02 3.26 16 9 C 0.11 6.13 5.57 -21.11 -0.12 6.02 16 10 C -0.18 -9.18 8.65 22.72 0.20 -8.99 16 11 C -0.10 -4.10 10.01 22.26 0.22 -3.87 16 12 C -0.23 -8.81 10.03 22.41 0.22 -8.59 16 13 C -0.06 -2.42 8.42 22.50 0.19 -2.23 16 14 C -0.26 -12.86 5.45 -19.70 -0.11 -12.96 16 15 C 0.59 28.09 6.84 86.66 0.59 28.69 16 16 O -0.59 -33.23 15.78 -4.07 -0.06 -33.29 16 17 N -0.62 -21.99 3.32 -815.18 -2.71 -24.70 16 18 C 0.10 2.50 5.89 86.73 0.51 3.01 16 19 C -0.11 -1.79 6.36 31.78 0.20 -1.58 16 20 C -0.05 -1.06 3.30 -10.07 -0.03 -1.09 16 21 H 0.10 1.94 8.03 -2.38 -0.02 1.93 16 22 C -0.03 -0.52 5.01 -19.67 -0.10 -0.62 16 23 C -0.17 -2.88 8.43 22.36 0.19 -2.69 16 24 C 0.09 1.57 11.18 84.68 0.95 2.52 16 25 N -0.52 -10.41 10.36 -195.83 -2.03 -12.44 16 26 C 0.09 1.51 11.18 84.68 0.95 2.45 16 27 C -0.17 -2.69 9.78 22.36 0.22 -2.47 16 28 C 0.11 3.23 6.35 86.93 0.55 3.78 16 29 H 0.29 14.10 8.29 -92.71 -0.77 13.33 16 30 H 0.11 6.14 6.16 -2.91 -0.02 6.12 16 31 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 32 H 0.13 4.07 8.06 -2.91 -0.02 4.04 16 33 H 0.13 4.20 6.05 -2.91 -0.02 4.19 16 34 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.08 1.96 5.67 -2.39 -0.01 1.94 16 36 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.10 1.32 7.27 -2.39 -0.02 1.30 16 38 H 0.15 2.11 7.15 -2.91 -0.02 2.09 16 39 H 0.17 2.15 8.06 -2.91 -0.02 2.12 16 40 H 0.18 1.95 8.06 -2.91 -0.02 1.93 16 41 H 0.15 1.80 8.04 -2.91 -0.02 1.77 16 42 H 0.07 1.96 6.74 -2.38 -0.02 1.94 16 43 H 0.05 1.76 7.99 -2.39 -0.02 1.74 16 Total: -1.00 -73.28 353.53 3.77 -69.52 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 1.03 Total: 24.14 kcal Atomic # 6 Polarization: -28.44 SS G_CDS: 5.28 Total: -23.16 kcal Atomic # 7 Polarization: -76.98 SS G_CDS: -4.51 Total: -81.49 kcal Atomic # 8 Polarization: -33.23 SS G_CDS: -0.06 Total: -33.29 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -73.28 3.77 -69.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601584031.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.588 kcal (2) G-P(sol) polarization free energy of solvation -73.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds