Wall clock time and date at job start Tue Mar 31 2020 13:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30630 * 1 3 3 Si 1.86799 * 120.00018 * 2 1 4 4 H 1.48504 * 109.47160 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47217 * 299.99667 * 3 2 1 6 6 H 1.48500 * 109.47285 * 59.99636 * 3 2 1 7 7 C 1.40273 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99950 * 192.27843 * 7 2 1 9 9 C 1.40884 * 120.00334 * 12.28701 * 7 2 1 10 10 C 1.40704 * 120.32489 * 29.82374 * 9 7 2 11 11 C 1.37609 * 119.88007 * 180.02562 * 10 9 7 12 12 C 1.38819 * 120.56865 * 0.02562 * 11 10 9 13 13 C 1.38217 * 120.67623 * 359.97438 * 12 11 10 14 14 C 1.39217 * 120.09521 * 0.02562 * 13 12 11 15 15 C 1.47434 * 120.28105 * 180.02562 * 14 13 12 16 16 O 1.21617 * 119.99869 * 227.70236 * 15 14 13 17 17 N 1.34777 * 120.00426 * 47.70898 * 15 14 13 18 18 C 1.47030 * 125.64458 * 354.70250 * 17 15 14 19 19 C 1.54321 * 107.26742 * 178.90522 * 18 17 15 20 20 C 1.55148 * 102.94466 * 337.80332 * 19 18 17 21 21 H 1.09006 * 111.00714 * 277.39160 * 20 19 18 22 22 C 1.50701 * 111.00557 * 153.57855 * 20 19 18 23 23 C 1.38669 * 120.41783 * 119.99799 * 22 20 19 24 24 C 1.38637 * 118.42162 * 180.02562 * 23 22 20 25 25 C 1.38223 * 119.15769 * 0.02562 * 24 23 22 26 26 N 1.31859 * 120.76367 * 359.97438 * 25 24 23 27 27 C 1.31881 * 121.72587 * 359.70901 * 26 25 24 28 28 C 1.47422 * 125.65314 * 174.38971 * 17 15 14 29 29 H 0.96997 * 119.99938 * 0.02562 * 1 2 3 30 30 H 1.07999 * 120.06298 * 0.04147 * 10 9 7 31 31 H 1.07997 * 119.70863 * 179.72162 * 11 10 9 32 32 H 1.08004 * 119.66091 * 179.97438 * 12 11 10 33 33 H 1.08005 * 119.95108 * 180.02562 * 13 12 11 34 34 H 1.08997 * 109.87816 * 298.32496 * 18 17 15 35 35 H 1.09001 * 109.87824 * 59.32936 * 18 17 15 36 36 H 1.08997 * 110.71931 * 96.17388 * 19 18 17 37 37 H 1.09006 * 110.71436 * 219.44009 * 19 18 17 38 38 H 1.08003 * 120.79349 * 0.02835 * 23 22 20 39 39 H 1.07999 * 120.42008 * 180.02562 * 24 23 22 40 40 H 1.07997 * 119.61898 * 180.02562 * 25 24 23 41 41 H 1.08001 * 119.61669 * 180.30532 * 27 26 25 42 42 H 1.08998 * 110.36773 * 323.00599 * 28 17 15 43 43 H 1.09002 * 110.36358 * 85.32662 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.7003 1.3464 0.0006 5 1 1.8816 2.3964 -1.2125 6 1 1.8815 2.3965 1.2124 7 6 2.0076 -1.2148 0.0005 8 1 3.0692 -1.2254 0.1995 9 6 1.3275 -2.4211 -0.2586 10 6 0.1937 -2.4326 -1.0918 11 6 -0.4639 -3.6159 -1.3383 12 6 -0.0192 -4.8022 -0.7709 13 6 1.0919 -4.8178 0.0510 14 6 1.7784 -3.6367 0.3192 15 6 2.9644 -3.6486 1.1950 16 8 3.0694 -2.8294 2.0877 17 7 3.9324 -4.5672 1.0062 18 6 3.8843 -5.6771 0.0431 19 6 5.2178 -6.4446 0.1617 20 6 6.1718 -5.3901 0.7823 21 1 6.5745 -4.7283 0.0155 22 6 7.2816 -6.0545 1.5556 23 6 8.6059 -5.8507 1.1983 24 6 9.5936 -6.4826 1.9379 25 6 9.2281 -7.2895 2.9990 26 7 7.9582 -7.4604 3.3102 27 6 6.9927 -6.8703 2.6328 28 6 5.2174 -4.6219 1.7267 29 1 -0.4850 0.8400 -0.0004 30 1 -0.1595 -1.5144 -1.5373 31 1 -1.3365 -3.6208 -1.9746 32 1 -0.5467 -5.7225 -0.9740 33 1 1.4280 -5.7475 0.4859 34 1 3.0526 -6.3397 0.2824 35 1 3.7675 -5.2859 -0.9676 36 1 5.1105 -7.3043 0.8231 37 1 5.5729 -6.7549 -0.8211 38 1 8.8618 -5.2147 0.3637 39 1 10.6355 -6.3461 1.6881 40 1 9.9915 -7.7850 3.5804 41 1 5.9641 -7.0304 2.9204 42 1 5.5930 -3.6151 1.9094 43 1 5.1025 -5.1613 2.6669 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601653201.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:45 Heat of formation + Delta-G solvation = 22.086813 kcal Electronic energy + Delta-G solvation = -26196.223062 eV Core-core repulsion = 22591.688056 eV Total energy + Delta-G solvation = -3604.535007 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.64436 -39.33933 -37.52302 -36.37528 -33.81533 -33.31066 -32.18563 -30.30929 -29.89448 -29.61268 -28.11349 -25.55493 -24.34960 -23.75756 -22.84342 -21.42540 -21.01737 -20.40486 -18.80755 -17.44074 -17.29537 -16.78850 -16.31227 -15.78410 -15.32927 -14.94427 -14.80091 -14.37442 -14.09516 -13.91091 -13.57772 -13.31677 -13.25796 -13.06234 -12.96134 -12.63536 -12.23445 -12.15441 -11.90995 -11.65969 -11.53193 -11.25320 -11.17661 -11.07815 -10.83968 -10.74628 -10.50079 -9.98830 -9.94326 -9.64716 -9.62006 -9.29135 -9.12012 -8.72846 -8.07504 -7.56406 -7.45471 -6.82896 -4.44090 0.87909 1.06953 2.46855 2.79105 3.06667 3.13774 3.18854 3.53917 3.58799 3.90434 3.92741 4.21566 4.49941 4.53292 4.58887 4.66746 4.72349 4.78112 4.91021 5.06349 5.28486 5.37822 5.41726 5.55762 5.59048 5.71148 5.73398 5.85773 5.89687 5.98006 6.06355 6.08144 6.18719 6.23309 6.33514 6.48072 6.52515 6.89811 6.97005 7.09195 7.20266 7.43702 7.66123 7.77238 7.86753 7.95425 8.12375 8.24402 8.53682 8.76511 8.83634 9.19726 10.11491 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015882 B = 0.003346 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.585039 B = 8365.060834 C = 9602.968587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.076 3.924 3 Si 0.913 3.087 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.430 4.430 8 H 0.080 0.920 9 C 0.147 3.853 10 C -0.155 4.155 11 C -0.094 4.094 12 C -0.246 4.246 13 C -0.061 4.061 14 C -0.251 4.251 15 C 0.597 3.403 16 O -0.534 6.534 17 N -0.629 5.629 18 C 0.106 3.894 19 C -0.122 4.122 20 C -0.062 4.062 21 H 0.095 0.905 22 C -0.116 4.116 23 C -0.071 4.071 24 C -0.172 4.172 25 C 0.089 3.911 26 N -0.483 5.483 27 C 0.105 3.895 28 C 0.118 3.882 29 H 0.283 0.717 30 H 0.120 0.880 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.153 0.847 41 H 0.156 0.844 42 H 0.076 0.924 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.904 -10.924 -1.484 17.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.143 4.143 3 Si 0.737 3.263 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.459 4.459 8 H 0.098 0.902 9 C 0.144 3.856 10 C -0.174 4.174 11 C -0.113 4.113 12 C -0.266 4.266 13 C -0.079 4.079 14 C -0.256 4.256 15 C 0.391 3.609 16 O -0.410 6.410 17 N -0.366 5.366 18 C -0.017 4.017 19 C -0.160 4.160 20 C -0.082 4.082 21 H 0.113 0.887 22 C -0.118 4.118 23 C -0.097 4.097 24 C -0.191 4.191 25 C -0.068 4.068 26 N -0.191 5.191 27 C -0.052 4.052 28 C -0.006 4.006 29 H 0.094 0.906 30 H 0.138 0.862 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.171 0.829 41 H 0.173 0.827 42 H 0.094 0.906 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.454 -10.770 -0.248 17.236 hybrid contribution 0.525 1.226 -0.686 1.500 sum 13.979 -9.544 -0.934 16.951 Atomic orbital electron populations 1.69713 1.07681 1.29493 1.34290 1.25979 0.94795 1.01540 0.92013 0.86168 0.81051 0.80497 0.78546 1.18312 1.19666 1.19713 1.19633 0.96718 0.90343 1.39174 0.90164 1.17371 0.90334 0.90688 0.87252 1.21321 0.98574 0.96693 1.00815 1.20795 0.98134 0.93392 0.98964 1.20263 1.01603 0.96857 1.07833 1.20665 0.95596 0.95142 0.96544 1.19357 1.01500 0.95550 1.09170 1.18253 0.81609 0.77838 0.83243 1.90709 1.78737 1.38565 1.33015 1.48573 1.17478 1.30188 1.40376 1.22029 0.96870 0.88621 0.94194 1.22781 0.94132 0.97364 1.01756 1.21265 0.92736 0.96871 0.97300 0.88658 1.20672 0.94779 0.98810 0.97535 1.21543 0.92024 0.97357 0.98794 1.22138 1.00581 0.99063 0.97366 1.22767 0.93267 0.95783 0.94960 1.67721 1.00980 1.21511 1.28907 1.22690 0.98941 0.92418 0.91189 1.22058 0.83524 1.00662 0.94311 0.90640 0.86183 0.89121 0.89131 0.88871 0.91236 0.91096 0.90546 0.89950 0.84732 0.84832 0.82932 0.82699 0.90581 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.41 11.00 55.56 0.61 -19.80 16 2 C 0.08 1.94 5.22 -17.30 -0.09 1.85 16 3 Si 0.91 19.35 29.58 -169.99 -5.03 14.32 16 4 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.43 -11.71 7.84 -37.82 -0.30 -12.01 16 8 H 0.08 2.23 7.04 -52.48 -0.37 1.86 16 9 C 0.15 3.92 5.55 -106.55 -0.59 3.33 16 10 C -0.15 -3.91 8.65 -38.88 -0.34 -4.25 16 11 C -0.09 -2.11 10.01 -39.60 -0.40 -2.51 16 12 C -0.25 -5.21 10.03 -39.37 -0.39 -5.61 16 13 C -0.06 -1.30 8.52 -39.23 -0.33 -1.64 16 14 C -0.25 -6.12 5.46 -104.37 -0.57 -6.69 16 15 C 0.60 14.00 6.72 -12.52 -0.08 13.91 16 16 O -0.53 -14.47 16.05 5.26 0.08 -14.38 16 17 N -0.63 -11.31 3.33 -171.92 -0.57 -11.89 16 18 C 0.11 1.49 5.63 -3.06 -0.02 1.48 16 19 C -0.12 -1.27 6.37 -24.90 -0.16 -1.43 16 20 C -0.06 -0.69 3.26 -89.75 -0.29 -0.98 16 21 H 0.10 1.02 8.02 -51.93 -0.42 0.60 16 22 C -0.12 -1.19 5.01 -104.48 -0.52 -1.72 16 23 C -0.07 -0.64 9.83 -39.28 -0.39 -1.02 16 24 C -0.17 -1.39 10.11 -39.44 -0.40 -1.79 16 25 C 0.09 0.83 11.18 -17.55 -0.20 0.63 16 26 N -0.48 -5.66 10.36 -13.26 -0.14 -5.80 16 27 C 0.10 1.17 9.50 -17.55 -0.17 1.00 16 28 C 0.12 1.75 6.29 -2.65 -0.02 1.73 16 29 H 0.28 6.61 8.29 -40.82 -0.34 6.27 16 30 H 0.12 3.10 6.36 -52.49 -0.33 2.77 16 31 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 33 H 0.09 1.73 5.94 -52.48 -0.31 1.42 16 34 H 0.07 0.95 6.02 -51.93 -0.31 0.64 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.08 0.72 7.24 -51.93 -0.38 0.35 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.13 0.95 8.04 -52.48 -0.42 0.53 16 39 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 40 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.16 1.63 7.03 -52.49 -0.37 1.26 16 42 H 0.08 1.25 8.09 -51.93 -0.42 0.83 16 43 H 0.06 0.88 6.65 -51.93 -0.35 0.53 16 LS Contribution 354.06 15.07 5.34 5.34 Total: -1.00 -31.69 354.06 -10.30 -41.99 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -5.35 Total: 5.91 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -5.25 Total: -15.70 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: -0.10 Total: -37.48 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.08 Total: -14.38 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.32 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.69 -10.30 -41.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601653201.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.079 kcal (2) G-P(sol) polarization free energy of solvation -31.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds