Wall clock time and date at job start Tue Mar 31 2020 13:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30625 * 1 3 3 Si 1.86806 * 119.99979 * 2 1 4 4 H 1.48490 * 109.47290 * 240.00143 * 3 2 1 5 5 H 1.48500 * 109.46883 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46856 * 119.99895 * 3 2 1 7 7 C 1.40273 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99571 * 168.96316 * 7 2 1 9 9 C 1.40882 * 120.00157 * 348.97171 * 7 2 1 10 10 C 1.40706 * 120.32576 * 329.38681 * 9 7 2 11 11 C 1.37608 * 119.87977 * 180.25553 * 10 9 7 12 12 C 1.38824 * 120.56809 * 359.73808 * 11 10 9 13 13 C 1.38218 * 120.67942 * 359.97438 * 12 11 10 14 14 C 1.39232 * 120.08937 * 0.02562 * 13 12 11 15 15 C 1.47439 * 120.27632 * 179.97438 * 14 13 12 16 16 O 1.21604 * 119.99557 * 132.40812 * 15 14 13 17 17 N 1.34773 * 120.00295 * 312.40275 * 15 14 13 18 18 C 1.47025 * 125.64900 * 354.89898 * 17 15 14 19 19 C 1.54319 * 107.40020 * 180.94350 * 18 17 15 20 20 C 1.55546 * 102.76336 * 22.24211 * 19 18 17 21 21 H 1.08998 * 111.02723 * 82.55394 * 20 19 18 22 22 C 1.50703 * 110.99854 * 206.38690 * 20 19 18 23 23 C 1.38668 * 120.41520 * 233.38556 * 22 20 19 24 24 C 1.38629 * 118.41980 * 179.78601 * 23 22 20 25 25 C 1.38228 * 119.16003 * 0.50517 * 24 23 22 26 26 N 1.31853 * 120.76362 * 359.73305 * 25 24 23 27 27 C 1.31888 * 121.72604 * 359.97438 * 26 25 24 28 28 C 1.47427 * 125.64918 * 174.85293 * 17 15 14 29 29 H 0.97001 * 120.00033 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.06102 * 359.97438 * 10 9 7 31 31 H 1.07995 * 119.71412 * 179.76199 * 11 10 9 32 32 H 1.08006 * 119.66142 * 179.97438 * 12 11 10 33 33 H 1.07998 * 119.95711 * 180.02562 * 13 12 11 34 34 H 1.09006 * 109.88230 * 300.43937 * 18 17 15 35 35 H 1.08998 * 109.88228 * 61.44626 * 18 17 15 36 36 H 1.09009 * 110.71559 * 140.63723 * 19 18 17 37 37 H 1.09000 * 110.71945 * 263.89996 * 19 18 17 38 38 H 1.07996 * 120.79411 * 0.02562 * 23 22 20 39 39 H 1.07997 * 120.42138 * 180.22268 * 24 23 22 40 40 H 1.07997 * 119.62253 * 179.70487 * 25 24 23 41 41 H 1.08004 * 119.61993 * 180.02562 * 27 26 25 42 42 H 1.08993 * 110.36496 * 274.75090 * 28 17 15 43 43 H 1.09001 * 110.36367 * 36.96072 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0939 1.6965 -1.2124 5 1 1.2752 2.7465 0.0006 6 1 3.0940 1.6964 1.2125 7 6 2.0076 -1.2148 -0.0005 8 1 3.0727 -1.2233 -0.1796 9 6 1.3228 -2.4237 0.2323 10 6 0.1830 -2.4471 1.0570 11 6 -0.4758 -3.6340 1.2825 12 6 -0.0291 -4.8115 0.6983 13 6 1.0844 -4.8142 -0.1206 14 6 1.7721 -3.6291 -0.3676 15 6 2.9608 -3.6274 -1.2400 16 8 3.0696 -2.7928 -2.1177 17 7 3.9267 -4.5508 -1.0646 18 6 3.9753 -5.5453 0.0172 19 6 5.2667 -6.3688 -0.1707 20 6 6.1598 -5.4188 -1.0188 21 1 6.6663 -4.6899 -0.3862 22 6 7.1532 -6.2007 -1.8391 23 6 8.5069 -5.9082 -1.7685 24 6 9.3846 -6.6565 -2.5374 25 6 8.8838 -7.6553 -3.3512 26 7 7.5895 -7.9026 -3.3969 27 6 6.7262 -7.2148 -2.6750 28 6 5.1092 -4.7315 -1.9263 29 1 -0.4850 0.8401 0.0004 30 1 -0.1715 -1.5360 1.5160 31 1 -1.3481 -3.6496 1.9190 32 1 -0.5571 -5.7349 0.8855 33 1 1.4215 -5.7369 -0.5694 34 1 3.9943 -5.0412 0.9835 35 1 3.1060 -6.2002 -0.0421 36 1 5.7319 -6.5816 0.7919 37 1 5.0601 -7.2917 -0.7126 38 1 8.8691 -5.1187 -1.1267 39 1 10.4458 -6.4586 -2.5046 40 1 9.5604 -8.2397 -3.9571 41 1 5.6732 -7.4464 -2.7384 42 1 4.8657 -5.3698 -2.7755 43 1 5.4779 -3.7657 -2.2719 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601653204.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:48 Heat of formation + Delta-G solvation = 21.464470 kcal Electronic energy + Delta-G solvation = -26184.967130 eV Core-core repulsion = 22580.405136 eV Total energy + Delta-G solvation = -3604.561994 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.63441 -39.32596 -37.51489 -36.36726 -33.79990 -33.30721 -32.18817 -30.30330 -29.88686 -29.57469 -28.13554 -25.54412 -24.31144 -23.80667 -22.79843 -21.44296 -20.99215 -20.43371 -18.77573 -17.44394 -17.31460 -16.77855 -16.31078 -15.78910 -15.30467 -14.95660 -14.73838 -14.37111 -14.09893 -13.96393 -13.54557 -13.33129 -13.26721 -13.05934 -12.95777 -12.61606 -12.17616 -12.14524 -11.94549 -11.65091 -11.53082 -11.23942 -11.17002 -11.08576 -10.85202 -10.74274 -10.51258 -9.98885 -9.95617 -9.66757 -9.62339 -9.27562 -9.12319 -8.73340 -8.06935 -7.55947 -7.44558 -6.81312 -4.44185 0.87652 1.06815 2.46725 2.81237 3.05841 3.10195 3.21548 3.54585 3.59294 3.90626 3.93297 4.21294 4.49195 4.53530 4.60059 4.66647 4.72641 4.78075 4.90594 5.05877 5.30064 5.37875 5.41443 5.55539 5.58914 5.71035 5.74823 5.85561 5.92702 5.97542 6.07728 6.08100 6.18317 6.22956 6.33003 6.47719 6.51622 6.89642 6.97921 7.09181 7.20908 7.43823 7.66133 7.76893 7.86817 7.95213 8.12391 8.24779 8.53514 8.76813 8.83729 9.19966 10.12961 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016339 B = 0.003313 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.274891 B = 8449.129214 C = 9680.654267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.076 3.924 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.431 4.431 8 H 0.079 0.921 9 C 0.147 3.853 10 C -0.153 4.153 11 C -0.095 4.095 12 C -0.245 4.245 13 C -0.059 4.059 14 C -0.251 4.251 15 C 0.597 3.403 16 O -0.534 6.534 17 N -0.629 5.629 18 C 0.106 3.894 19 C -0.123 4.123 20 C -0.062 4.062 21 H 0.095 0.905 22 C -0.116 4.116 23 C -0.071 4.071 24 C -0.172 4.172 25 C 0.089 3.911 26 N -0.483 5.483 27 C 0.105 3.895 28 C 0.117 3.883 29 H 0.283 0.717 30 H 0.121 0.879 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.153 0.847 41 H 0.156 0.844 42 H 0.061 0.939 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.837 -10.956 0.651 17.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.143 4.143 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.460 4.460 8 H 0.097 0.903 9 C 0.144 3.856 10 C -0.173 4.173 11 C -0.113 4.113 12 C -0.265 4.265 13 C -0.078 4.078 14 C -0.256 4.256 15 C 0.391 3.609 16 O -0.410 6.410 17 N -0.366 5.366 18 C -0.017 4.017 19 C -0.161 4.161 20 C -0.081 4.081 21 H 0.113 0.887 22 C -0.118 4.118 23 C -0.097 4.097 24 C -0.191 4.191 25 C -0.068 4.068 26 N -0.191 5.191 27 C -0.052 4.052 28 C -0.006 4.006 29 H 0.095 0.905 30 H 0.138 0.862 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.171 0.829 41 H 0.173 0.827 42 H 0.079 0.921 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 13.292 -10.913 -0.413 17.203 hybrid contribution 0.639 1.353 0.498 1.577 sum 13.931 -9.560 0.085 16.896 Atomic orbital electron populations 1.69689 1.07650 1.29661 1.34386 1.25962 0.94809 1.01478 0.92018 0.86273 0.80139 0.79722 0.80153 1.18679 1.20182 1.18769 1.19552 0.96334 0.90281 1.39833 0.90301 1.17373 0.90416 0.90701 0.87139 1.21332 0.98436 0.96626 1.00870 1.20799 0.98169 0.93424 0.98941 1.20270 1.01506 0.96974 1.07712 1.20607 0.95581 0.94998 0.96576 1.19383 1.01299 0.95702 1.09169 1.18251 0.81469 0.77846 0.83346 1.90706 1.78709 1.36923 1.34697 1.48571 1.23624 1.35308 1.29127 1.21985 0.97275 0.90794 0.91669 1.22860 0.94873 0.97843 1.00524 1.21372 0.93877 0.96783 0.96117 0.88665 1.20681 0.94649 0.97773 0.98716 1.21546 0.92540 0.98221 0.97413 1.22138 1.01051 0.97594 0.98356 1.22765 0.92003 0.95503 0.96504 1.67719 1.03521 1.26968 1.20927 1.22683 0.99673 0.91400 0.91477 1.22094 0.85059 1.00582 0.92861 0.90548 0.86156 0.89107 0.89120 0.88978 0.91305 0.91068 0.89938 0.90491 0.84737 0.84834 0.82931 0.82714 0.92084 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.50 10.98 55.56 0.61 -19.89 16 2 C 0.08 1.95 5.24 -17.30 -0.09 1.86 16 3 Si 0.91 19.37 29.58 -169.99 -5.03 14.34 16 4 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.43 -11.74 7.81 -37.82 -0.30 -12.04 16 8 H 0.08 2.18 7.09 -52.48 -0.37 1.81 16 9 C 0.15 3.92 5.55 -106.55 -0.59 3.33 16 10 C -0.15 -3.87 8.64 -38.88 -0.34 -4.21 16 11 C -0.09 -2.12 10.01 -39.59 -0.40 -2.52 16 12 C -0.25 -5.19 10.03 -39.37 -0.39 -5.59 16 13 C -0.06 -1.27 8.41 -39.22 -0.33 -1.60 16 14 C -0.25 -6.11 5.37 -104.36 -0.56 -6.67 16 15 C 0.60 14.00 6.69 -12.51 -0.08 13.91 16 16 O -0.53 -14.48 16.01 5.27 0.08 -14.40 16 17 N -0.63 -11.30 3.33 -171.78 -0.57 -11.87 16 18 C 0.11 1.50 5.97 -3.07 -0.02 1.48 16 19 C -0.12 -1.27 6.38 -24.69 -0.16 -1.43 16 20 C -0.06 -0.68 3.28 -89.41 -0.29 -0.97 16 21 H 0.10 1.02 8.01 -51.93 -0.42 0.60 16 22 C -0.12 -1.19 5.01 -104.48 -0.52 -1.71 16 23 C -0.07 -0.64 9.83 -39.28 -0.39 -1.02 16 24 C -0.17 -1.39 10.11 -39.44 -0.40 -1.79 16 25 C 0.09 0.82 11.18 -17.55 -0.20 0.63 16 26 N -0.48 -5.62 10.36 -13.25 -0.14 -5.76 16 27 C 0.10 1.15 9.48 -17.55 -0.17 0.99 16 28 C 0.12 1.74 6.36 -2.53 -0.02 1.72 16 29 H 0.28 6.69 8.29 -40.82 -0.34 6.35 16 30 H 0.12 3.10 6.38 -52.49 -0.33 2.77 16 31 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.09 1.67 8.06 -52.48 -0.42 1.24 16 33 H 0.09 1.72 6.45 -52.49 -0.34 1.39 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 0.99 5.91 -51.93 -0.31 0.68 16 36 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 37 H 0.08 0.72 6.80 -51.93 -0.35 0.37 16 38 H 0.13 0.96 8.04 -52.49 -0.42 0.54 16 39 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.16 1.58 7.03 -52.48 -0.37 1.21 16 42 H 0.06 0.87 7.09 -51.93 -0.37 0.50 16 43 H 0.08 1.26 7.99 -51.93 -0.41 0.84 16 LS Contribution 354.53 15.07 5.34 5.34 Total: -1.00 -31.64 354.53 -10.30 -41.94 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -5.37 Total: 5.91 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -5.23 Total: -15.62 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: -0.10 Total: -37.52 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.08 Total: -14.40 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.64 -10.30 -41.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601653204.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.404 kcal (2) G-P(sol) polarization free energy of solvation -31.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds