Wall clock time and date at job start Tue Mar 31 2020 13:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30625 * 1 3 3 Si 1.86806 * 119.99979 * 2 1 4 4 H 1.48490 * 109.47290 * 240.00143 * 3 2 1 5 5 H 1.48500 * 109.46883 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46856 * 119.99895 * 3 2 1 7 7 C 1.40273 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99571 * 168.96316 * 7 2 1 9 9 C 1.40882 * 120.00157 * 348.97171 * 7 2 1 10 10 C 1.40706 * 120.32576 * 329.38681 * 9 7 2 11 11 C 1.37608 * 119.87977 * 180.25553 * 10 9 7 12 12 C 1.38824 * 120.56809 * 359.73808 * 11 10 9 13 13 C 1.38218 * 120.67942 * 359.97438 * 12 11 10 14 14 C 1.39232 * 120.08937 * 0.02562 * 13 12 11 15 15 C 1.47439 * 120.27632 * 179.97438 * 14 13 12 16 16 O 1.21604 * 119.99557 * 132.40812 * 15 14 13 17 17 N 1.34773 * 120.00295 * 312.40275 * 15 14 13 18 18 C 1.47025 * 125.64900 * 354.89898 * 17 15 14 19 19 C 1.54319 * 107.40020 * 180.94350 * 18 17 15 20 20 C 1.55546 * 102.76336 * 22.24211 * 19 18 17 21 21 H 1.08998 * 111.02723 * 82.55394 * 20 19 18 22 22 C 1.50703 * 110.99854 * 206.38690 * 20 19 18 23 23 C 1.38668 * 120.41520 * 233.38556 * 22 20 19 24 24 C 1.38629 * 118.41980 * 179.78601 * 23 22 20 25 25 C 1.38228 * 119.16003 * 0.50517 * 24 23 22 26 26 N 1.31853 * 120.76362 * 359.73305 * 25 24 23 27 27 C 1.31888 * 121.72604 * 359.97438 * 26 25 24 28 28 C 1.47427 * 125.64918 * 174.85293 * 17 15 14 29 29 H 0.97001 * 120.00033 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.06102 * 359.97438 * 10 9 7 31 31 H 1.07995 * 119.71412 * 179.76199 * 11 10 9 32 32 H 1.08006 * 119.66142 * 179.97438 * 12 11 10 33 33 H 1.07998 * 119.95711 * 180.02562 * 13 12 11 34 34 H 1.09006 * 109.88230 * 300.43937 * 18 17 15 35 35 H 1.08998 * 109.88228 * 61.44626 * 18 17 15 36 36 H 1.09009 * 110.71559 * 140.63723 * 19 18 17 37 37 H 1.09000 * 110.71945 * 263.89996 * 19 18 17 38 38 H 1.07996 * 120.79411 * 0.02562 * 23 22 20 39 39 H 1.07997 * 120.42138 * 180.22268 * 24 23 22 40 40 H 1.07997 * 119.62253 * 179.70487 * 25 24 23 41 41 H 1.08004 * 119.61993 * 180.02562 * 27 26 25 42 42 H 1.08993 * 110.36496 * 274.75090 * 28 17 15 43 43 H 1.09001 * 110.36367 * 36.96072 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0939 1.6965 -1.2124 5 1 1.2752 2.7465 0.0006 6 1 3.0940 1.6964 1.2125 7 6 2.0076 -1.2148 -0.0005 8 1 3.0727 -1.2233 -0.1796 9 6 1.3228 -2.4237 0.2323 10 6 0.1830 -2.4471 1.0570 11 6 -0.4758 -3.6340 1.2825 12 6 -0.0291 -4.8115 0.6983 13 6 1.0844 -4.8142 -0.1206 14 6 1.7721 -3.6291 -0.3676 15 6 2.9608 -3.6274 -1.2400 16 8 3.0696 -2.7928 -2.1177 17 7 3.9267 -4.5508 -1.0646 18 6 3.9753 -5.5453 0.0172 19 6 5.2667 -6.3688 -0.1707 20 6 6.1598 -5.4188 -1.0188 21 1 6.6663 -4.6899 -0.3862 22 6 7.1532 -6.2007 -1.8391 23 6 8.5069 -5.9082 -1.7685 24 6 9.3846 -6.6565 -2.5374 25 6 8.8838 -7.6553 -3.3512 26 7 7.5895 -7.9026 -3.3969 27 6 6.7262 -7.2148 -2.6750 28 6 5.1092 -4.7315 -1.9263 29 1 -0.4850 0.8401 0.0004 30 1 -0.1715 -1.5360 1.5160 31 1 -1.3481 -3.6496 1.9190 32 1 -0.5571 -5.7349 0.8855 33 1 1.4215 -5.7369 -0.5694 34 1 3.9943 -5.0412 0.9835 35 1 3.1060 -6.2002 -0.0421 36 1 5.7319 -6.5816 0.7919 37 1 5.0601 -7.2917 -0.7126 38 1 8.8691 -5.1187 -1.1267 39 1 10.4458 -6.4586 -2.5046 40 1 9.5604 -8.2397 -3.9571 41 1 5.6732 -7.4464 -2.7384 42 1 4.8657 -5.3698 -2.7755 43 1 5.4779 -3.7657 -2.2719 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601653204.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:47 Heat of formation + Delta-G solvation = 3.582097 kcal Electronic energy + Delta-G solvation = -26185.742568 eV Core-core repulsion = 22580.405136 eV Total energy + Delta-G solvation = -3605.337432 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.55363 -40.73693 -39.04392 -38.04812 -35.63720 -34.41348 -32.99933 -31.93965 -31.48391 -30.94913 -29.30410 -27.37660 -25.57355 -24.62594 -23.84734 -22.98451 -22.77375 -21.40365 -20.37710 -19.15791 -18.20641 -18.14336 -17.43768 -17.23261 -16.69257 -16.55314 -16.04968 -15.76186 -15.46090 -14.90871 -14.69987 -14.64298 -14.46602 -14.34818 -14.28992 -13.92526 -13.77868 -13.51246 -13.41926 -13.02591 -12.96709 -12.82436 -12.67011 -12.52108 -12.24443 -12.12456 -11.86693 -11.69175 -11.45173 -11.14858 -10.70741 -10.58352 -10.36301 -9.86246 -9.62233 -9.34608 -9.31191 -8.69076 -6.41773 0.15631 0.36561 0.62960 1.01056 1.30577 1.42167 1.48406 2.00591 2.16898 2.23254 2.71775 2.83100 3.43435 3.59326 3.62593 3.66043 3.75237 4.02540 4.07109 4.14346 4.16435 4.27816 4.29051 4.39721 4.47528 4.60412 4.63487 4.70116 4.82257 4.87733 4.89496 4.92463 5.02529 5.07224 5.15729 5.21656 5.23991 5.33399 5.40297 5.51489 5.60022 5.79936 5.85329 6.00013 6.09629 6.28268 6.53615 6.67499 6.85465 6.93250 7.04841 7.44182 8.27386 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016339 B = 0.003313 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.274891 B = 8449.129214 C = 9680.654267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.036 3.964 3 Si 0.977 3.023 4 H -0.275 1.275 5 H -0.257 1.257 6 H -0.252 1.252 7 C -0.470 4.470 8 H 0.056 0.944 9 C 0.116 3.884 10 C -0.179 4.179 11 C -0.093 4.093 12 C -0.232 4.232 13 C -0.057 4.057 14 C -0.265 4.265 15 C 0.590 3.410 16 O -0.588 6.588 17 N -0.624 5.624 18 C 0.099 3.901 19 C -0.108 4.108 20 C -0.045 4.045 21 H 0.101 0.899 22 C -0.123 4.123 23 C -0.075 4.075 24 C -0.165 4.165 25 C 0.081 3.919 26 N -0.512 5.512 27 C 0.091 3.909 28 C 0.112 3.888 29 H 0.291 0.709 30 H 0.105 0.895 31 H 0.121 0.879 32 H 0.132 0.868 33 H 0.124 0.876 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.109 0.891 37 H 0.092 0.908 38 H 0.154 0.846 39 H 0.165 0.835 40 H 0.177 0.823 41 H 0.155 0.845 42 H 0.068 0.932 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.312 -13.221 1.525 20.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.180 4.180 3 Si 0.797 3.203 4 H -0.200 1.200 5 H -0.181 1.181 6 H -0.176 1.176 7 C -0.499 4.499 8 H 0.075 0.925 9 C 0.112 3.888 10 C -0.199 4.199 11 C -0.111 4.111 12 C -0.251 4.251 13 C -0.075 4.075 14 C -0.270 4.270 15 C 0.383 3.617 16 O -0.469 6.469 17 N -0.358 5.358 18 C -0.023 4.023 19 C -0.146 4.146 20 C -0.065 4.065 21 H 0.119 0.881 22 C -0.125 4.125 23 C -0.101 4.101 24 C -0.185 4.185 25 C -0.076 4.076 26 N -0.221 5.221 27 C -0.065 4.065 28 C -0.011 4.011 29 H 0.101 0.899 30 H 0.123 0.877 31 H 0.138 0.862 32 H 0.150 0.850 33 H 0.142 0.858 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.127 0.873 37 H 0.111 0.889 38 H 0.171 0.829 39 H 0.183 0.817 40 H 0.194 0.806 41 H 0.173 0.827 42 H 0.086 0.914 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.782 -13.242 0.499 19.852 hybrid contribution 0.218 1.815 0.192 1.838 sum 15.000 -11.427 0.691 18.869 Atomic orbital electron populations 1.69721 1.08613 1.30759 1.35505 1.26701 0.95672 1.04233 0.91352 0.85345 0.79041 0.76128 0.79751 1.20008 1.18094 1.17626 1.19560 0.95561 0.91996 1.42807 0.92541 1.17731 0.91434 0.91540 0.88063 1.21296 0.99205 0.97437 1.01913 1.21164 0.98474 0.92797 0.98678 1.20763 1.00683 0.97991 1.05695 1.20941 0.95209 0.95135 0.96232 1.19703 1.02188 0.96215 1.08886 1.18251 0.82440 0.78352 0.82696 1.90658 1.79992 1.39331 1.36906 1.48469 1.22940 1.34316 1.30073 1.22256 0.99927 0.90227 0.89935 1.22854 0.92446 0.97316 1.01959 1.21211 0.93094 0.96799 0.95373 0.88119 1.20545 0.95079 0.97842 0.99080 1.21864 0.92093 0.98568 0.97552 1.22475 1.02529 0.96431 0.97030 1.23275 0.91603 0.95951 0.96731 1.67716 1.04738 1.27909 1.21748 1.22737 0.99873 0.91927 0.91983 1.22286 0.85054 1.00051 0.93676 0.89855 0.87738 0.86151 0.85018 0.85819 0.92076 0.90295 0.87293 0.88911 0.82870 0.81748 0.80576 0.82733 0.91407 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.44 10.98 21.88 0.24 -44.20 16 2 C 0.04 1.92 5.24 85.37 0.45 2.37 16 3 Si 0.98 41.41 29.58 68.60 2.03 43.44 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 5 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 6 H -0.25 -10.11 7.11 99.48 0.71 -9.41 16 7 C -0.47 -27.23 7.81 23.41 0.18 -27.05 16 8 H 0.06 3.38 7.09 -2.91 -0.02 3.36 16 9 C 0.12 6.42 5.55 -21.11 -0.12 6.31 16 10 C -0.18 -9.29 8.64 22.72 0.20 -9.09 16 11 C -0.09 -4.04 10.01 22.26 0.22 -3.81 16 12 C -0.23 -9.18 10.03 22.41 0.22 -8.95 16 13 C -0.06 -2.35 8.41 22.50 0.19 -2.16 16 14 C -0.27 -13.22 5.37 -19.70 -0.11 -13.33 16 15 C 0.59 28.74 6.69 86.67 0.58 29.32 16 16 O -0.59 -33.90 16.01 -4.04 -0.06 -33.96 16 17 N -0.62 -22.65 3.33 -815.65 -2.71 -25.36 16 18 C 0.10 2.64 5.97 86.73 0.52 3.16 16 19 C -0.11 -1.95 6.38 31.92 0.20 -1.74 16 20 C -0.04 -0.92 3.28 -10.01 -0.03 -0.96 16 21 H 0.10 1.98 8.01 -2.39 -0.02 1.96 16 22 C -0.12 -2.29 5.01 -19.77 -0.10 -2.39 16 23 C -0.07 -1.14 9.83 22.47 0.22 -0.92 16 24 C -0.17 -2.15 10.11 22.36 0.23 -1.93 16 25 C 0.08 1.30 11.18 84.69 0.95 2.24 16 26 N -0.51 -11.12 10.36 -195.84 -2.03 -13.15 16 27 C 0.09 1.88 9.48 84.67 0.80 2.68 16 28 C 0.11 3.34 6.36 86.85 0.55 3.90 16 29 H 0.29 14.19 8.29 -92.71 -0.77 13.42 16 30 H 0.10 5.65 6.38 -2.91 -0.02 5.63 16 31 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 32 H 0.13 4.17 8.06 -2.91 -0.02 4.14 16 33 H 0.12 4.28 6.45 -2.91 -0.02 4.26 16 34 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.08 2.00 5.91 -2.39 -0.01 1.99 16 36 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.09 1.44 6.80 -2.39 -0.02 1.42 16 38 H 0.15 1.70 8.04 -2.91 -0.02 1.68 16 39 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 40 H 0.18 1.79 8.06 -2.91 -0.02 1.77 16 41 H 0.16 2.99 7.03 -2.91 -0.02 2.97 16 42 H 0.07 1.94 7.09 -2.39 -0.02 1.92 16 43 H 0.05 1.84 7.99 -2.39 -0.02 1.82 16 Total: -1.00 -74.21 354.53 3.65 -70.56 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 1.03 Total: 25.02 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: 5.16 Total: -22.34 kcal Atomic # 7 Polarization: -78.20 SS G_CDS: -4.50 Total: -82.71 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -0.06 Total: -33.96 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -74.21 3.65 -70.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601653204.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.141 kcal (2) G-P(sol) polarization free energy of solvation -74.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds