Wall clock time and date at job start Tue Mar 31 2020 13:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99591 * 2 1 4 4 H 1.48494 * 109.47121 * 239.99870 * 3 2 1 5 5 H 1.48502 * 109.47318 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47197 * 119.99499 * 3 2 1 7 7 C 1.37869 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00038 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00327 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47354 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47137 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47199 * 305.00129 * 11 10 9 13 13 N 1.46894 * 109.46601 * 65.00066 * 11 10 9 14 14 C 1.50695 * 109.47038 * 185.00054 * 11 10 9 15 15 O 1.21275 * 120.00135 * 260.00279 * 14 11 10 16 16 N 1.34773 * 120.00119 * 79.99955 * 14 11 10 17 17 C 1.46385 * 119.80171 * 359.97438 * 16 14 11 18 18 C 1.52167 * 111.21758 * 243.58968 * 17 16 14 19 19 O 1.43174 * 110.18873 * 298.64789 * 18 17 16 20 20 C 1.35660 * 115.84479 * 89.36926 * 19 18 17 21 21 C 1.38780 * 120.21611 * 107.18304 * 20 19 18 22 22 C 1.38351 * 119.82309 * 184.29506 * 21 20 19 23 23 F 1.35101 * 119.86847 * 180.02562 * 22 21 20 24 24 C 1.38525 * 120.26684 * 0.04044 * 22 21 20 25 25 C 1.38390 * 119.97087 * 359.31335 * 24 22 21 26 26 C 1.37737 * 119.72185 * 359.97055 * 25 24 22 27 27 C 1.46660 * 119.80268 * 179.97438 * 16 14 11 28 28 H 0.96990 * 120.00248 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47373 * 59.99464 * 9 7 2 30 30 H 1.08999 * 109.46891 * 300.00060 * 9 7 2 31 31 H 1.09002 * 109.46662 * 59.99939 * 10 9 7 32 32 H 1.08999 * 109.47298 * 299.99967 * 10 9 7 33 33 H 1.00900 * 111.00525 * 296.04081 * 13 11 10 34 34 H 1.00893 * 111.00254 * 60.00435 * 13 11 10 35 35 H 1.09006 * 109.12779 * 4.03290 * 17 16 14 36 36 H 1.09001 * 109.13125 * 123.13706 * 17 16 14 37 37 H 1.09003 * 109.35301 * 58.88318 * 18 17 16 38 38 H 1.09002 * 109.35390 * 178.59300 * 18 17 16 39 39 H 1.07998 * 120.08704 * 4.27134 * 21 20 19 40 40 H 1.08001 * 120.01637 * 179.04540 * 24 22 21 41 41 H 1.07997 * 120.13867 * 179.97438 * 25 24 22 42 42 H 1.08998 * 109.58552 * 339.98735 * 27 16 14 43 43 H 1.08998 * 109.70336 * 219.63446 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4806 -4.9871 0.0012 12 1 0.7887 -5.0068 0.8432 13 7 0.7285 -5.1188 -1.2537 14 6 2.4553 -6.1297 0.1250 15 8 2.7869 -6.7535 -0.8608 16 7 2.9586 -6.4584 1.3313 17 6 2.5559 -5.7022 2.5182 18 6 3.7418 -4.9779 3.1383 19 8 4.7339 -5.9218 3.5561 20 6 5.6661 -6.2504 2.6269 21 6 6.9658 -5.7780 2.7441 22 6 7.8870 -6.0438 1.7467 23 9 9.1526 -5.5849 1.8600 24 6 7.5169 -6.7784 0.6321 25 6 6.2249 -7.2614 0.5202 26 6 5.3124 -7.0088 1.5206 27 6 3.9065 -7.5715 1.4469 28 1 -0.4850 0.8399 -0.0004 29 1 0.6249 -2.5571 -0.8896 30 1 0.6242 -2.5567 0.8903 31 1 2.8722 -3.6041 0.8906 32 1 2.8722 -3.6043 -0.8894 33 1 0.0236 -4.4009 -1.3300 34 1 1.3481 -5.1033 -2.0499 35 1 1.7986 -4.9708 2.2358 36 1 2.1327 -6.3880 3.2521 37 1 4.1753 -4.2995 2.4033 38 1 3.4042 -4.4060 4.0026 39 1 7.2572 -5.2042 3.6114 40 1 8.2351 -6.9703 -0.1514 41 1 5.9333 -7.8340 -0.3477 42 1 3.8172 -8.2195 0.5750 43 1 3.6936 -8.1431 2.3502 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602583020.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:18 Heat of formation + Delta-G solvation = -110.317148 kcal Electronic energy + Delta-G solvation = -27894.630031 eV Core-core repulsion = 23853.584333 eV Total energy + Delta-G solvation = -4041.045698 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.02905 -42.01692 -40.57394 -38.47347 -37.19808 -36.65750 -34.86470 -32.96225 -31.93054 -31.69636 -29.86807 -28.72072 -27.13567 -25.44218 -24.66326 -23.46945 -22.72218 -22.10438 -20.30295 -19.41881 -18.98540 -18.34739 -17.78467 -17.55167 -17.11892 -16.86983 -16.79843 -16.55161 -16.24752 -15.83735 -15.72729 -15.53068 -15.36713 -14.88563 -14.70267 -14.64239 -14.28609 -14.05182 -13.97809 -13.48243 -13.32442 -13.00481 -12.85220 -12.81032 -12.60441 -12.54698 -12.52182 -12.16799 -11.82178 -11.69373 -11.40969 -11.30633 -10.72313 -10.55101 -10.04381 -9.87534 -9.71040 -9.57063 -8.21188 -6.30973 -0.16242 0.01699 1.39737 1.40679 1.48117 1.52105 1.78701 2.17932 2.39518 2.74021 3.12934 3.24077 3.39266 3.57678 3.68239 3.72237 3.89061 3.90527 3.97016 4.07634 4.10741 4.13360 4.20955 4.40555 4.46364 4.59218 4.63169 4.70991 4.75656 4.84425 4.85326 4.94277 5.06434 5.08038 5.28538 5.39027 5.46542 5.55588 5.65095 5.80631 6.01653 6.20896 6.24908 6.30362 6.46115 6.83807 7.07632 7.38221 8.89121 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011367 B = 0.004029 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.690524 B = 6947.605941 C = 8202.692488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.012 3.988 3 Si 0.951 3.049 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.543 4.543 8 H 0.051 0.949 9 C 0.033 3.967 10 C -0.121 4.121 11 C 0.079 3.921 12 H 0.114 0.886 13 N -0.829 5.829 14 C 0.528 3.472 15 O -0.561 6.561 16 N -0.606 5.606 17 C 0.068 3.932 18 C 0.048 3.952 19 O -0.326 6.326 20 C 0.128 3.872 21 C -0.179 4.179 22 C 0.104 3.896 23 F -0.141 7.141 24 C -0.160 4.160 25 C -0.059 4.059 26 C -0.153 4.153 27 C 0.158 3.842 28 H 0.264 0.736 29 H 0.002 0.998 30 H 0.008 0.992 31 H 0.065 0.935 32 H 0.039 0.961 33 H 0.354 0.646 34 H 0.343 0.657 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.051 0.949 38 H 0.142 0.858 39 H 0.150 0.850 40 H 0.159 0.841 41 H 0.153 0.847 42 H 0.096 0.904 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.113 -14.902 7.344 19.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.187 4.187 3 Si 0.777 3.223 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.069 0.931 9 C -0.004 4.004 10 C -0.160 4.160 11 C -0.036 4.036 12 H 0.132 0.868 13 N -0.361 5.361 14 C 0.317 3.683 15 O -0.439 6.439 16 N -0.339 5.339 17 C -0.054 4.054 18 C -0.027 4.027 19 O -0.242 6.242 20 C 0.084 3.916 21 C -0.198 4.198 22 C 0.085 3.915 23 F -0.120 7.120 24 C -0.179 4.179 25 C -0.078 4.078 26 C -0.155 4.155 27 C 0.036 3.964 28 H 0.073 0.927 29 H 0.020 0.980 30 H 0.026 0.974 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.169 0.831 34 H 0.156 0.844 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.070 0.930 38 H 0.159 0.841 39 H 0.168 0.832 40 H 0.177 0.823 41 H 0.170 0.830 42 H 0.115 0.885 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 9.899 -15.885 7.308 20.093 hybrid contribution 0.971 2.321 -0.468 2.559 sum 10.871 -13.564 6.840 18.680 Atomic orbital electron populations 1.70032 1.07324 1.27785 1.51199 1.25753 0.95621 1.02575 0.94770 0.85709 0.78495 0.79179 0.78936 1.19976 1.20804 1.19230 1.21532 0.93153 0.92452 1.51009 0.93051 1.18944 0.93879 0.91635 0.95976 1.22172 0.98825 0.93846 1.01193 1.21479 0.94862 0.91258 0.96042 0.86846 1.58769 1.18352 1.55687 1.03273 1.20832 0.80853 0.84080 0.82575 1.90604 1.61441 1.54156 1.37666 1.47917 1.44863 1.33725 1.07365 1.22366 0.97827 0.97816 0.87435 1.23386 0.87450 0.89671 1.02170 1.86101 1.39439 1.62176 1.36516 1.18321 0.88763 0.95434 0.89126 1.21327 0.93642 1.03904 1.00946 1.17619 0.79383 0.98269 0.96278 1.91502 1.37108 1.87161 1.96227 1.21461 0.98347 0.99863 0.98181 1.20969 0.91444 0.97573 0.97799 1.20996 0.98151 1.01411 0.94949 1.20609 0.82769 0.88163 1.04860 0.92717 0.97988 0.97387 0.91678 0.94211 0.83125 0.84378 0.87389 0.87233 0.93037 0.84074 0.83176 0.82289 0.82980 0.88547 0.87190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.46 13.29 21.45 0.28 -52.18 16 2 C 0.01 0.64 5.46 84.65 0.46 1.10 16 3 Si 0.95 42.34 29.54 68.60 2.03 44.37 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.54 -28.73 9.11 25.60 0.23 -28.50 16 8 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 9 C 0.03 1.52 4.74 29.85 0.14 1.66 16 10 C -0.12 -4.45 4.50 30.60 0.14 -4.31 16 11 C 0.08 2.48 2.35 44.17 0.10 2.58 16 12 H 0.11 3.23 6.53 -2.39 -0.02 3.22 16 13 N -0.83 -27.24 8.93 -171.81 -1.54 -28.78 16 14 C 0.53 16.25 6.92 87.66 0.61 16.86 16 15 O -0.56 -20.35 15.68 -3.02 -0.05 -20.39 16 16 N -0.61 -14.66 2.69 -825.95 -2.22 -16.88 16 17 C 0.07 1.32 5.49 86.13 0.47 1.79 16 18 C 0.05 0.96 6.52 71.71 0.47 1.42 16 19 O -0.33 -7.13 9.90 -89.76 -0.89 -8.02 16 20 C 0.13 2.97 5.62 22.51 0.13 3.10 16 21 C -0.18 -4.05 9.98 22.43 0.22 -3.83 16 22 C 0.10 2.34 7.29 22.37 0.16 2.50 16 23 F -0.14 -3.30 17.26 44.97 0.78 -2.53 16 24 C -0.16 -3.21 10.03 22.37 0.22 -2.98 16 25 C -0.06 -1.24 9.71 22.19 0.22 -1.02 16 26 C -0.15 -3.45 5.49 -19.58 -0.11 -3.56 16 27 C 0.16 3.39 5.67 85.89 0.49 3.87 16 28 H 0.26 14.26 8.31 -92.72 -0.77 13.49 16 29 H 0.00 0.09 6.87 -2.39 -0.02 0.07 16 30 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.06 2.26 6.00 -2.39 -0.01 2.24 16 32 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.35 11.73 7.55 -89.69 -0.68 11.05 16 34 H 0.34 11.62 8.58 -89.70 -0.77 10.85 16 35 H 0.11 2.19 4.89 -2.38 -0.01 2.18 16 36 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.05 1.24 6.89 -2.39 -0.02 1.23 16 38 H 0.14 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 40 H 0.16 2.45 8.06 -2.91 -0.02 2.42 16 41 H 0.15 2.77 8.00 -2.91 -0.02 2.74 16 42 H 0.10 2.18 6.96 -2.39 -0.02 2.16 16 43 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -64.59 352.64 1.97 -62.62 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: -0.38 Total: 31.10 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: 3.96 Total: -9.31 kcal Atomic # 7 Polarization: -94.36 SS G_CDS: -3.47 Total: -97.84 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.94 Total: -28.41 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.78 Total: -2.53 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -64.59 1.97 -62.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602583020.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.697 kcal (2) G-P(sol) polarization free energy of solvation -64.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds