Wall clock time and date at job start Tue Mar 31 2020 13:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00187 * 2 1 4 4 H 1.48500 * 109.46705 * 270.00072 * 3 2 1 5 5 H 1.48502 * 109.47023 * 29.99590 * 3 2 1 6 6 H 1.48496 * 109.47541 * 149.99818 * 3 2 1 7 7 C 1.37881 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99985 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99585 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46724 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47195 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.46788 * 55.00194 * 11 10 9 13 13 N 1.46899 * 109.47626 * 295.00792 * 11 10 9 14 14 C 1.50695 * 109.47340 * 175.00264 * 11 10 9 15 15 O 1.21275 * 120.00135 * 100.00444 * 14 11 10 16 16 N 1.34773 * 120.00119 * 280.00120 * 14 11 10 17 17 C 1.46385 * 119.80171 * 359.97438 * 16 14 11 18 18 C 1.52167 * 111.21758 * 243.58968 * 17 16 14 19 19 O 1.43174 * 110.18873 * 298.64789 * 18 17 16 20 20 C 1.35660 * 115.84479 * 89.36926 * 19 18 17 21 21 C 1.38780 * 120.21611 * 107.18304 * 20 19 18 22 22 C 1.38351 * 119.82309 * 184.29506 * 21 20 19 23 23 F 1.35101 * 119.86847 * 180.02562 * 22 21 20 24 24 C 1.38525 * 120.26684 * 0.04044 * 22 21 20 25 25 C 1.38390 * 119.97087 * 359.31335 * 24 22 21 26 26 C 1.37737 * 119.72185 * 359.97055 * 25 24 22 27 27 C 1.46660 * 119.80268 * 179.97438 * 16 14 11 28 28 H 0.97003 * 119.99417 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.46978 * 60.00404 * 9 7 2 30 30 H 1.08993 * 109.47184 * 300.00102 * 9 7 2 31 31 H 1.08999 * 109.46911 * 60.00549 * 10 9 7 32 32 H 1.08993 * 109.47525 * 300.00079 * 10 9 7 33 33 H 1.00901 * 111.00413 * 176.04446 * 13 11 10 34 34 H 1.00906 * 110.99562 * 299.99772 * 13 11 10 35 35 H 1.09006 * 109.12779 * 4.03290 * 17 16 14 36 36 H 1.09001 * 109.13125 * 123.13706 * 17 16 14 37 37 H 1.09003 * 109.35301 * 58.88318 * 18 17 16 38 38 H 1.09002 * 109.35390 * 178.59300 * 18 17 16 39 39 H 1.07998 * 120.08704 * 4.27134 * 21 20 19 40 40 H 1.08001 * 120.01637 * 179.04540 * 24 22 21 41 41 H 1.07997 * 120.13867 * 179.97438 * 25 24 22 42 42 H 1.08998 * 109.58552 * 339.98735 * 27 16 14 43 43 H 1.08999 * 109.58855 * 219.56126 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0215 -2.6366 0.0023 11 6 5.5515 -2.6366 0.0022 12 1 5.9148 -2.0465 0.8436 13 7 6.0413 -2.0522 -1.2534 14 6 6.0538 -4.0519 0.1271 15 8 6.4279 -4.6518 -0.8582 16 7 6.0874 -4.6510 1.3339 17 6 5.6354 -3.9227 2.5206 18 6 6.7749 -3.7174 3.5079 19 8 7.2755 -4.9822 3.9546 20 6 8.2737 -5.5196 3.2095 21 6 9.5740 -5.5393 3.6941 22 6 10.5999 -6.0077 2.8927 23 9 11.8660 -6.0278 3.3637 24 6 10.3343 -6.4559 1.6092 25 6 9.0362 -6.4493 1.1294 26 6 8.0134 -5.9966 1.9332 27 6 6.5766 -6.0287 1.4504 28 1 -0.4849 0.8401 -0.0004 29 1 3.8745 -0.6801 0.8912 30 1 3.8752 -0.6804 -0.8888 31 1 3.6586 -3.1509 -0.8875 32 1 3.6579 -3.1498 0.8924 33 1 7.0478 -1.9817 -1.2510 34 1 5.7177 -2.5817 -2.0490 35 1 5.2466 -2.9508 2.2166 36 1 4.8400 -4.4886 3.0056 37 1 7.5775 -3.1619 3.0228 38 1 6.4117 -3.1520 4.3662 39 1 9.7846 -5.1897 4.6940 40 1 11.1404 -6.8062 0.9815 41 1 8.8260 -6.7977 0.1290 42 1 6.5287 -6.5169 0.4770 43 1 5.9626 -6.5752 2.1662 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602583021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:21 Heat of formation + Delta-G solvation = -87.119081 kcal Electronic energy + Delta-G solvation = -27527.857349 eV Core-core repulsion = 23487.817595 eV Total energy + Delta-G solvation = -4040.039755 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.27491 -41.19091 -39.67808 -37.75740 -35.82350 -35.55053 -32.85372 -32.16183 -31.20889 -30.56861 -29.09079 -27.58201 -25.95742 -24.28012 -23.36950 -22.53175 -21.76824 -20.27671 -19.38736 -18.67418 -17.74740 -16.98744 -16.86807 -16.52490 -16.36333 -16.09408 -16.04157 -15.63927 -15.34595 -14.73632 -14.42409 -14.40997 -14.16435 -14.04917 -13.71283 -13.56629 -13.07915 -12.71396 -12.58658 -12.45260 -12.14701 -12.03731 -11.83929 -11.72963 -11.45012 -11.03822 -10.94318 -10.71377 -10.36525 -10.04514 -9.77415 -9.66367 -9.33886 -9.17277 -9.02822 -8.89177 -8.55538 -8.44488 -6.03562 -4.01648 0.56380 0.73135 2.53190 2.63565 2.97419 3.33887 3.40877 3.44846 3.44897 3.95969 4.25415 4.40892 4.44095 4.47023 4.55186 4.64263 4.69480 4.77865 4.81523 4.86258 5.04885 5.19776 5.23598 5.31954 5.34719 5.43228 5.54011 5.56256 5.58831 5.63821 5.77780 6.02628 6.17218 6.23902 6.25556 6.39895 6.78400 6.99241 7.09815 7.27166 7.31279 7.49791 7.57606 7.81161 8.04639 8.53233 9.01018 9.59163 11.09845 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022291 B = 0.002943 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.803270 B = 9511.079968 C = 9788.898294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.066 3.934 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.069 0.931 9 C -0.003 4.003 10 C -0.090 4.090 11 C 0.073 3.927 12 H 0.098 0.902 13 N -0.810 5.810 14 C 0.487 3.513 15 O -0.545 6.545 16 N -0.608 5.608 17 C 0.067 3.933 18 C 0.050 3.950 19 O -0.323 6.323 20 C 0.138 3.862 21 C -0.173 4.173 22 C 0.115 3.885 23 F -0.137 7.137 24 C -0.163 4.163 25 C -0.055 4.055 26 C -0.143 4.143 27 C 0.154 3.846 28 H 0.262 0.738 29 H 0.012 0.988 30 H 0.030 0.970 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.335 0.665 34 H 0.351 0.649 35 H 0.115 0.885 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.118 0.882 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.100 0.900 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.361 -11.996 7.508 24.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.087 0.913 9 C -0.041 4.041 10 C -0.128 4.128 11 C -0.043 4.043 12 H 0.115 0.885 13 N -0.338 5.338 14 C 0.274 3.726 15 O -0.422 6.422 16 N -0.342 5.342 17 C -0.056 4.056 18 C -0.025 4.025 19 O -0.239 6.239 20 C 0.094 3.906 21 C -0.192 4.192 22 C 0.095 3.905 23 F -0.115 7.115 24 C -0.182 4.182 25 C -0.074 4.074 26 C -0.145 4.145 27 C 0.031 3.969 28 H 0.072 0.928 29 H 0.030 0.970 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.147 0.853 34 H 0.165 0.835 35 H 0.132 0.868 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.135 0.865 39 H 0.161 0.839 40 H 0.157 0.843 41 H 0.159 0.841 42 H 0.119 0.881 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 19.907 -11.590 7.349 24.179 hybrid contribution 1.174 -0.020 -0.028 1.174 sum 21.080 -11.609 7.321 25.155 Atomic orbital electron populations 1.69926 1.06363 1.26863 1.51276 1.25019 0.94694 0.99216 0.94548 0.86739 0.80198 0.83451 0.78612 1.20284 1.21690 1.18928 1.21158 0.89654 0.94352 1.50869 0.91274 1.19481 0.96444 0.90995 0.97171 1.21530 0.87761 1.01731 1.01782 1.21926 0.99573 0.87736 0.95031 0.88467 1.59043 1.15377 1.56020 1.03368 1.22739 0.76649 0.90975 0.82190 1.90638 1.48551 1.66298 1.36712 1.48029 1.64475 1.13965 1.07707 1.22268 0.97166 0.99999 0.86171 1.23283 0.96595 0.83286 0.99375 1.86129 1.50394 1.36080 1.51292 1.18229 0.86908 0.95844 0.89638 1.21185 0.90862 1.05171 1.02003 1.17458 0.78965 1.00898 0.93155 1.91518 1.37008 1.94309 1.88713 1.21234 0.98419 1.03681 0.94831 1.20781 0.90729 0.96375 0.99507 1.20907 0.97473 1.02124 0.94012 1.20537 0.89244 0.83983 1.03137 0.92794 0.96973 0.95201 0.92047 0.91991 0.85309 0.83504 0.86754 0.89344 0.91734 0.86452 0.83918 0.84272 0.84123 0.88124 0.89098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.58 13.96 55.43 0.77 -26.81 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 7 C -0.52 -14.41 9.66 -34.44 -0.33 -14.74 16 8 H 0.07 2.06 7.99 -52.49 -0.42 1.64 16 9 C 0.00 -0.08 3.93 -27.88 -0.11 -0.19 16 10 C -0.09 -1.63 4.44 -26.73 -0.12 -1.75 16 11 C 0.07 1.08 2.28 -68.87 -0.16 0.92 16 12 H 0.10 1.30 6.69 -51.93 -0.35 0.95 16 13 N -0.81 -12.04 8.44 -5.66 -0.05 -12.08 16 14 C 0.49 6.95 6.91 -10.99 -0.08 6.88 16 15 O -0.55 -9.04 15.68 5.56 0.09 -8.95 16 16 N -0.61 -7.21 2.69 -174.99 -0.47 -7.68 16 17 C 0.07 0.67 5.53 -4.53 -0.03 0.64 16 18 C 0.05 0.43 6.67 36.73 0.24 0.67 16 19 O -0.32 -3.32 9.90 -18.68 -0.18 -3.51 16 20 C 0.14 1.45 5.62 -39.20 -0.22 1.23 16 21 C -0.17 -1.69 9.98 -39.34 -0.39 -2.09 16 22 C 0.11 1.13 7.29 -39.43 -0.29 0.84 16 23 F -0.14 -1.40 17.26 2.25 0.04 -1.36 16 24 C -0.16 -1.45 10.03 -39.42 -0.40 -1.85 16 25 C -0.06 -0.52 9.71 -39.71 -0.39 -0.91 16 26 C -0.14 -1.50 5.49 -104.18 -0.57 -2.07 16 27 C 0.15 1.67 5.67 -4.66 -0.03 1.64 16 28 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.01 0.27 7.20 -51.93 -0.37 -0.11 16 30 H 0.03 0.69 7.18 -51.93 -0.37 0.32 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.06 1.06 6.98 -51.93 -0.36 0.70 16 33 H 0.34 4.30 9.06 -39.29 -0.36 3.95 16 34 H 0.35 5.35 8.58 -39.29 -0.34 5.01 16 35 H 0.11 1.17 4.68 -51.93 -0.24 0.93 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.56 7.88 -51.93 -0.41 0.15 16 38 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.14 1.18 8.00 -52.49 -0.42 0.76 16 42 H 0.10 1.15 6.96 -51.93 -0.36 0.79 16 43 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 353.02 15.07 5.32 5.32 Total: -1.00 -32.58 353.02 -7.81 -40.39 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -5.71 Total: 6.88 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -2.95 Total: -8.97 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.25 Total: -46.58 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -0.10 Total: -12.46 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.58 -7.81 -40.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602583021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.733 kcal (2) G-P(sol) polarization free energy of solvation -32.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds