Wall clock time and date at job start Tue Mar 31 2020 13:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00187 * 2 1 4 4 H 1.48500 * 109.46705 * 270.00072 * 3 2 1 5 5 H 1.48502 * 109.47023 * 29.99590 * 3 2 1 6 6 H 1.48496 * 109.47541 * 149.99818 * 3 2 1 7 7 C 1.37881 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99985 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99585 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46724 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47195 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.46788 * 55.00194 * 11 10 9 13 13 N 1.46899 * 109.47626 * 295.00792 * 11 10 9 14 14 C 1.50695 * 109.47340 * 175.00264 * 11 10 9 15 15 O 1.21275 * 120.00135 * 100.00444 * 14 11 10 16 16 N 1.34773 * 120.00119 * 280.00120 * 14 11 10 17 17 C 1.46385 * 119.80171 * 359.97438 * 16 14 11 18 18 C 1.52167 * 111.21758 * 243.58968 * 17 16 14 19 19 O 1.43174 * 110.18873 * 298.64789 * 18 17 16 20 20 C 1.35660 * 115.84479 * 89.36926 * 19 18 17 21 21 C 1.38780 * 120.21611 * 107.18304 * 20 19 18 22 22 C 1.38351 * 119.82309 * 184.29506 * 21 20 19 23 23 F 1.35101 * 119.86847 * 180.02562 * 22 21 20 24 24 C 1.38525 * 120.26684 * 0.04044 * 22 21 20 25 25 C 1.38390 * 119.97087 * 359.31335 * 24 22 21 26 26 C 1.37737 * 119.72185 * 359.97055 * 25 24 22 27 27 C 1.46660 * 119.80268 * 179.97438 * 16 14 11 28 28 H 0.97003 * 119.99417 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.46978 * 60.00404 * 9 7 2 30 30 H 1.08993 * 109.47184 * 300.00102 * 9 7 2 31 31 H 1.08999 * 109.46911 * 60.00549 * 10 9 7 32 32 H 1.08993 * 109.47525 * 300.00079 * 10 9 7 33 33 H 1.00901 * 111.00413 * 176.04446 * 13 11 10 34 34 H 1.00906 * 110.99562 * 299.99772 * 13 11 10 35 35 H 1.09006 * 109.12779 * 4.03290 * 17 16 14 36 36 H 1.09001 * 109.13125 * 123.13706 * 17 16 14 37 37 H 1.09003 * 109.35301 * 58.88318 * 18 17 16 38 38 H 1.09002 * 109.35390 * 178.59300 * 18 17 16 39 39 H 1.07998 * 120.08704 * 4.27134 * 21 20 19 40 40 H 1.08001 * 120.01637 * 179.04540 * 24 22 21 41 41 H 1.07997 * 120.13867 * 179.97438 * 25 24 22 42 42 H 1.08998 * 109.58552 * 339.98735 * 27 16 14 43 43 H 1.08999 * 109.58855 * 219.56126 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0215 -2.6366 0.0023 11 6 5.5515 -2.6366 0.0022 12 1 5.9148 -2.0465 0.8436 13 7 6.0413 -2.0522 -1.2534 14 6 6.0538 -4.0519 0.1271 15 8 6.4279 -4.6518 -0.8582 16 7 6.0874 -4.6510 1.3339 17 6 5.6354 -3.9227 2.5206 18 6 6.7749 -3.7174 3.5079 19 8 7.2755 -4.9822 3.9546 20 6 8.2737 -5.5196 3.2095 21 6 9.5740 -5.5393 3.6941 22 6 10.5999 -6.0077 2.8927 23 9 11.8660 -6.0278 3.3637 24 6 10.3343 -6.4559 1.6092 25 6 9.0362 -6.4493 1.1294 26 6 8.0134 -5.9966 1.9332 27 6 6.5766 -6.0287 1.4504 28 1 -0.4849 0.8401 -0.0004 29 1 3.8745 -0.6801 0.8912 30 1 3.8752 -0.6804 -0.8888 31 1 3.6586 -3.1509 -0.8875 32 1 3.6579 -3.1498 0.8924 33 1 7.0478 -1.9817 -1.2510 34 1 5.7177 -2.5817 -2.0490 35 1 5.2466 -2.9508 2.2166 36 1 4.8400 -4.4886 3.0056 37 1 7.5775 -3.1619 3.0228 38 1 6.4117 -3.1520 4.3662 39 1 9.7846 -5.1897 4.6940 40 1 11.1404 -6.8062 0.9815 41 1 8.8260 -6.7977 0.1290 42 1 6.5287 -6.5169 0.4770 43 1 5.9626 -6.5752 2.1662 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602583021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:20 Heat of formation + Delta-G solvation = -109.191903 kcal Electronic energy + Delta-G solvation = -27528.814498 eV Core-core repulsion = 23487.817595 eV Total energy + Delta-G solvation = -4040.996904 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.03264 -42.05595 -40.66713 -38.49482 -36.98249 -36.74058 -34.80133 -32.96804 -32.29005 -31.94402 -29.90218 -28.82335 -27.23536 -25.28618 -24.49310 -23.44708 -22.61208 -21.89095 -20.42059 -19.48175 -18.94181 -18.58334 -17.79841 -17.60018 -17.11427 -17.00445 -16.86951 -16.74062 -16.24709 -16.08555 -15.59923 -15.47155 -15.32098 -14.93184 -14.78981 -14.66936 -14.37050 -14.12299 -13.85337 -13.57347 -13.38484 -12.92359 -12.84830 -12.80089 -12.59908 -12.43997 -12.19208 -11.89703 -11.79292 -11.61609 -11.42135 -11.23289 -11.07918 -10.69317 -10.08540 -9.91504 -9.78965 -9.54203 -8.22803 -6.26008 -0.17875 0.00155 1.41321 1.43847 1.44861 1.56938 1.78618 2.18351 2.43105 2.69852 3.14206 3.22896 3.34630 3.53810 3.62251 3.68132 3.87582 3.89199 3.94532 4.05719 4.08231 4.10725 4.22209 4.37439 4.43425 4.59088 4.65549 4.70001 4.78779 4.83168 4.84723 4.93112 5.05570 5.14086 5.26214 5.34223 5.52109 5.54390 5.66447 5.74831 6.01064 6.20375 6.29087 6.34579 6.47405 6.83023 6.96875 7.38641 8.94040 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022291 B = 0.002943 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.803270 B = 9511.079968 C = 9788.898294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.002 3.998 3 Si 0.952 3.048 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.237 1.237 7 C -0.529 4.529 8 H 0.028 0.972 9 C 0.003 3.997 10 C -0.080 4.080 11 C 0.083 3.917 12 H 0.120 0.880 13 N -0.817 5.817 14 C 0.488 3.512 15 O -0.572 6.572 16 N -0.603 5.603 17 C 0.062 3.938 18 C 0.052 3.948 19 O -0.330 6.330 20 C 0.130 3.870 21 C -0.175 4.175 22 C 0.107 3.893 23 F -0.140 7.140 24 C -0.159 4.159 25 C -0.059 4.059 26 C -0.152 4.152 27 C 0.153 3.847 28 H 0.264 0.736 29 H 0.027 0.973 30 H 0.026 0.974 31 H 0.039 0.961 32 H 0.069 0.931 33 H 0.348 0.652 34 H 0.347 0.653 35 H 0.114 0.886 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.145 0.855 39 H 0.153 0.847 40 H 0.159 0.841 41 H 0.149 0.851 42 H 0.092 0.908 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.701 -11.283 8.545 26.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.194 4.194 3 Si 0.776 3.224 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.160 1.160 7 C -0.567 4.567 8 H 0.047 0.953 9 C -0.034 4.034 10 C -0.118 4.118 11 C -0.033 4.033 12 H 0.137 0.863 13 N -0.346 5.346 14 C 0.275 3.725 15 O -0.451 6.451 16 N -0.335 5.335 17 C -0.061 4.061 18 C -0.023 4.023 19 O -0.246 6.246 20 C 0.085 3.915 21 C -0.194 4.194 22 C 0.087 3.913 23 F -0.119 7.119 24 C -0.177 4.177 25 C -0.077 4.077 26 C -0.154 4.154 27 C 0.031 3.969 28 H 0.073 0.927 29 H 0.046 0.954 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.161 0.839 34 H 0.160 0.840 35 H 0.132 0.868 36 H 0.114 0.886 37 H 0.084 0.916 38 H 0.162 0.838 39 H 0.171 0.829 40 H 0.177 0.823 41 H 0.166 0.834 42 H 0.110 0.890 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 22.275 -10.897 8.423 26.189 hybrid contribution 0.390 -0.349 -0.336 0.622 sum 22.665 -11.246 8.087 26.562 Atomic orbital electron populations 1.70088 1.08438 1.27992 1.53174 1.26005 0.95513 1.03551 0.94295 0.85630 0.79740 0.78139 0.78898 1.20040 1.21498 1.16045 1.21551 0.92506 0.92804 1.49844 0.95317 1.19366 0.92824 0.93794 0.97419 1.21303 0.90455 0.98862 1.01221 1.21731 0.96917 0.88747 0.95900 0.86268 1.59042 1.16471 1.55926 1.03199 1.22531 0.76700 0.90648 0.82590 1.90629 1.50015 1.66698 1.37777 1.48068 1.63464 1.14364 1.07608 1.22449 0.98106 0.99808 0.85723 1.23400 0.95988 0.82872 1.00032 1.86125 1.50382 1.36754 1.51371 1.18311 0.87249 0.96236 0.89695 1.21304 0.90640 1.04967 1.02513 1.17594 0.78860 1.01247 0.93579 1.91510 1.37216 1.94375 1.88799 1.21441 0.98749 1.02809 0.94713 1.20921 0.90789 0.96247 0.99790 1.20907 0.97239 1.02869 0.94355 1.20587 0.89990 0.83337 1.02990 0.92718 0.95445 0.95564 0.94176 0.91233 0.83878 0.83977 0.86812 0.88650 0.91633 0.83782 0.82885 0.82316 0.83356 0.88993 0.88140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.52 13.96 21.45 0.30 -59.22 16 2 C 0.00 0.14 5.47 84.65 0.46 0.61 16 3 Si 0.95 43.46 27.47 68.60 1.88 45.35 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.24 -9.72 6.54 99.48 0.65 -9.06 16 7 C -0.53 -29.52 9.66 25.60 0.25 -29.28 16 8 H 0.03 1.77 7.99 -2.91 -0.02 1.75 16 9 C 0.00 0.15 3.93 29.85 0.12 0.27 16 10 C -0.08 -2.84 4.44 30.59 0.14 -2.70 16 11 C 0.08 2.28 2.28 44.17 0.10 2.38 16 12 H 0.12 2.79 6.69 -2.39 -0.02 2.77 16 13 N -0.82 -22.88 8.44 -171.81 -1.45 -24.33 16 14 C 0.49 13.29 6.91 87.66 0.61 13.89 16 15 O -0.57 -18.53 15.68 -3.02 -0.05 -18.58 16 16 N -0.60 -13.34 2.69 -825.95 -2.22 -15.57 16 17 C 0.06 1.08 5.53 86.13 0.48 1.56 16 18 C 0.05 0.75 6.67 71.71 0.48 1.23 16 19 O -0.33 -6.07 9.90 -89.76 -0.89 -6.96 16 20 C 0.13 2.49 5.62 22.51 0.13 2.61 16 21 C -0.18 -3.12 9.98 22.43 0.22 -2.90 16 22 C 0.11 1.91 7.29 22.37 0.16 2.07 16 23 F -0.14 -2.64 17.26 44.97 0.78 -1.87 16 24 C -0.16 -2.53 10.03 22.37 0.22 -2.30 16 25 C -0.06 -1.02 9.71 22.19 0.22 -0.81 16 26 C -0.15 -2.95 5.49 -19.58 -0.11 -3.06 16 27 C 0.15 3.15 5.67 85.89 0.49 3.63 16 28 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 29 H 0.03 1.12 7.20 -2.39 -0.02 1.10 16 30 H 0.03 1.17 7.18 -2.39 -0.02 1.15 16 31 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.07 2.33 6.98 -2.39 -0.02 2.31 16 33 H 0.35 8.21 9.06 -89.69 -0.81 7.39 16 34 H 0.35 10.28 8.58 -89.69 -0.77 9.51 16 35 H 0.11 2.03 4.68 -2.38 -0.01 2.02 16 36 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.07 0.96 7.88 -2.39 -0.02 0.94 16 38 H 0.14 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 40 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 41 H 0.15 2.30 8.00 -2.91 -0.02 2.28 16 42 H 0.09 2.05 6.96 -2.39 -0.02 2.04 16 43 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -70.55 353.02 1.73 -68.82 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: -0.57 Total: 25.14 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: 3.96 Total: -12.79 kcal Atomic # 7 Polarization: -95.74 SS G_CDS: -3.38 Total: -99.12 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.94 Total: -25.53 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.78 Total: -1.87 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.88 Total: 45.35 kcal Total: -70.55 1.73 -68.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602583021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.376 kcal (2) G-P(sol) polarization free energy of solvation -70.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds