Wall clock time and date at job start Tue Mar 31 2020 13:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39653 * 120.14983 * 345.57339 * 3 2 1 5 5 C 1.37926 * 119.84363 * 180.25496 * 4 3 2 6 6 C 1.38384 * 120.15203 * 359.74543 * 5 4 3 7 7 C 1.38346 * 120.30673 * 0.02562 * 6 5 4 8 8 C 1.37972 * 120.14906 * 359.97438 * 7 6 5 9 9 C 1.50703 * 120.07425 * 180.02562 * 8 7 6 10 10 N 1.46502 * 109.47002 * 260.00243 * 9 8 7 11 11 C 1.39663 * 119.99806 * 180.02562 * 10 9 8 12 12 C 1.38973 * 120.04649 * 0.02562 * 11 10 9 13 13 C 1.38116 * 120.03003 * 179.97438 * 12 11 10 14 14 C 1.38216 * 120.13578 * 359.74695 * 13 12 11 15 15 C 1.38779 * 120.08401 * 0.51068 * 14 13 12 16 16 O 1.35897 * 120.00949 * 179.76812 * 15 14 13 17 17 C 1.42898 * 117.00481 * 359.71829 * 16 15 14 18 18 C 1.52997 * 109.47319 * 180.02562 * 17 16 15 19 19 C 1.50697 * 109.47466 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99890 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00428 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99563 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00432 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46616 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47104 * 119.99966 * 23 21 19 26 26 H 1.48489 * 109.47200 * 240.00246 * 23 21 19 27 27 C 1.38609 * 119.96517 * 359.48769 * 15 14 13 28 28 H 1.07997 * 120.07916 * 359.97438 * 4 3 2 29 29 H 1.08003 * 119.92493 * 179.77134 * 5 4 3 30 30 H 1.07996 * 119.84837 * 180.02562 * 6 5 4 31 31 H 1.08001 * 119.92530 * 179.97438 * 7 6 5 32 32 H 1.09001 * 109.46841 * 140.00365 * 9 8 7 33 33 H 1.09000 * 109.46773 * 20.00009 * 9 8 7 34 34 H 0.97001 * 119.99801 * 359.97438 * 10 9 8 35 35 H 1.07996 * 119.98294 * 0.02562 * 12 11 10 36 36 H 1.08007 * 119.92769 * 180.02562 * 13 12 11 37 37 H 1.07991 * 119.95689 * 180.26971 * 14 13 12 38 38 H 1.09002 * 109.47259 * 300.00417 * 17 16 15 39 39 H 1.09001 * 109.47074 * 60.00439 * 17 16 15 40 40 H 1.09002 * 109.47153 * 300.00307 * 18 17 16 41 41 H 1.08998 * 109.47533 * 59.99936 * 18 17 16 42 42 H 0.97002 * 119.99731 * 180.02562 * 22 21 19 43 43 H 1.08006 * 120.06150 * 180.23058 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2700 -1.1686 0.3009 5 6 4.6492 -1.1595 0.3042 6 6 5.3374 0.0033 0.0052 7 6 4.6483 1.1639 -0.2984 8 6 3.2687 1.1690 -0.3054 9 6 2.5198 2.4340 -0.6369 10 7 2.0636 3.0702 0.6014 11 6 1.3414 4.2644 0.5480 12 6 1.0545 4.8497 -0.6794 13 6 0.3397 6.0304 -0.7319 14 6 -0.0964 6.6300 0.4346 15 6 0.1919 6.0529 1.6633 16 8 -0.2336 6.6462 2.8095 17 6 -0.9670 7.8653 2.6755 18 6 -1.3578 8.3805 4.0621 19 6 -2.1317 9.6658 3.9208 20 1 -2.3258 10.0742 2.9400 21 6 -2.5929 10.3199 5.0435 22 7 -2.3569 9.8223 6.2379 23 14 -3.5516 11.9135 4.8684 24 1 -3.6803 12.2580 3.4297 25 1 -4.9035 11.7453 5.4595 26 1 -2.8338 13.0034 5.5767 27 6 0.9088 4.8680 1.7205 28 1 2.7341 -2.0766 0.5348 29 1 5.1934 -2.0620 0.5403 30 1 6.4173 0.0047 0.0088 31 1 5.1917 2.0680 -0.5305 32 1 1.6587 2.1937 -1.2605 33 1 3.1787 3.1160 -1.1744 34 1 2.2626 2.6616 1.4584 35 1 1.3898 4.3807 -1.5926 36 1 0.1173 6.4837 -1.6867 37 1 -0.6587 7.5509 0.3900 38 1 -0.3477 8.6086 2.1734 39 1 -1.8670 7.6851 2.0876 40 1 -1.9769 7.6373 4.5646 41 1 -0.4577 8.5607 4.6498 42 1 -2.6817 10.2822 7.0277 43 1 1.1308 4.4155 2.6758 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604008839.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:30 Heat of formation + Delta-G solvation = 35.783324 kcal Electronic energy + Delta-G solvation = -24376.009517 eV Core-core repulsion = 20772.068435 eV Total energy + Delta-G solvation = -3603.941082 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.38098 -39.63242 -37.71403 -36.75154 -35.33082 -33.32846 -32.32909 -31.87532 -30.79136 -29.46603 -28.49670 -26.25864 -24.88050 -24.22551 -22.77470 -22.26475 -21.35063 -20.32294 -19.23465 -18.03947 -16.93514 -16.35151 -16.29587 -15.92430 -15.55939 -15.37425 -15.23402 -14.89163 -14.74209 -14.43216 -14.07556 -14.05046 -13.64831 -13.42624 -13.27667 -13.14034 -12.79689 -12.61952 -12.60989 -12.30044 -11.98327 -11.64827 -11.55199 -11.49353 -11.18914 -10.90816 -10.70772 -10.42077 -10.02948 -9.71649 -9.61721 -9.58632 -9.48677 -9.24711 -8.42616 -7.93250 -7.35853 -6.07566 -4.11789 0.18475 0.63694 1.72795 1.87848 2.34133 2.51388 3.11319 3.28650 3.35583 3.39499 3.41830 3.52445 4.00335 4.04295 4.12007 4.20589 4.39974 4.45019 4.64639 4.78998 4.99374 5.06066 5.09308 5.20348 5.28884 5.31412 5.37497 5.56055 5.58816 5.64447 5.78052 5.79027 5.82224 6.10976 6.11481 6.12030 6.17613 6.39282 6.63522 6.68158 6.75318 6.90151 7.13749 7.33937 7.54186 7.62011 7.68488 7.86532 8.14374 8.28034 8.94143 9.52314 11.04110 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.024874 B = 0.001897 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.383925 B =14759.025292 C =14942.698078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C 0.242 3.758 3 C -0.010 4.010 4 C -0.074 4.074 5 C -0.114 4.114 6 C -0.092 4.092 7 C -0.099 4.099 8 C -0.059 4.059 9 C 0.163 3.837 10 N -0.745 5.745 11 C 0.246 3.754 12 C -0.243 4.243 13 C -0.037 4.037 14 C -0.262 4.262 15 C 0.188 3.812 16 O -0.316 6.316 17 C 0.066 3.934 18 C 0.024 3.976 19 C -0.524 4.524 20 H 0.059 0.941 21 C 0.059 3.941 22 N -0.890 5.890 23 Si 0.899 3.101 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.283 1.283 27 C -0.235 4.235 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.137 0.863 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.400 0.600 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.127 0.873 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.027 0.973 41 H 0.027 0.973 42 H 0.262 0.738 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.453 -22.413 -16.430 33.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.072 5.072 2 C -0.073 4.073 3 C -0.013 4.013 4 C -0.094 4.094 5 C -0.132 4.132 6 C -0.111 4.111 7 C -0.118 4.118 8 C -0.062 4.062 9 C 0.039 3.961 10 N -0.377 5.377 11 C 0.145 3.855 12 C -0.266 4.266 13 C -0.056 4.056 14 C -0.282 4.282 15 C 0.140 3.860 16 O -0.229 6.229 17 C -0.008 4.008 18 C -0.013 4.013 19 C -0.563 4.563 20 H 0.077 0.923 21 C -0.143 4.143 22 N -0.528 5.528 23 Si 0.726 3.274 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.209 1.209 27 C -0.258 4.258 28 H 0.152 0.848 29 H 0.153 0.847 30 H 0.151 0.849 31 H 0.155 0.845 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.235 0.765 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.145 0.855 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.072 0.928 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 16.699 -22.469 -16.226 32.358 hybrid contribution -0.108 0.811 0.175 0.836 sum 16.591 -21.659 -16.051 31.654 Atomic orbital electron populations 1.81318 1.11905 1.06680 1.07280 1.25612 0.92647 0.94380 0.94704 1.15947 0.84508 0.95122 1.05753 1.21230 0.94508 0.96667 0.97018 1.21184 0.93575 0.98926 0.99527 1.21452 1.00740 0.92414 0.96482 1.21107 0.92583 0.99074 0.99029 1.19960 0.94030 0.93571 0.98642 1.20200 0.97602 0.90341 0.87990 1.44455 1.61598 1.24300 1.07332 1.17298 0.89842 0.85203 0.93198 1.20369 1.10571 1.00190 0.95451 1.20616 0.93941 0.93593 0.97407 1.21162 1.10567 1.04449 0.92070 1.18812 0.90408 0.90885 0.85920 1.86147 1.68506 1.39763 1.28451 1.23317 0.93065 0.81337 1.03063 1.19133 0.97381 0.95852 0.88914 1.21021 1.35166 1.07010 0.93073 0.92283 1.25001 0.96154 0.97966 0.95176 1.69993 1.45773 1.39413 0.97628 0.86427 0.79626 0.83046 0.78270 1.19628 1.20869 1.20856 1.19651 1.10332 0.98498 0.97315 0.84753 0.84728 0.84896 0.84516 0.91466 0.90485 0.76534 0.86745 0.86306 0.85529 0.93064 0.93094 0.95438 0.95415 0.92801 0.85779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -5.15 18.54 41.84 0.78 -4.38 16 2 C 0.24 2.41 14.00 -22.47 -0.31 2.09 16 3 C -0.01 -0.07 5.73 -106.93 -0.61 -0.68 16 4 C -0.07 -0.34 9.76 -39.17 -0.38 -0.73 16 5 C -0.11 -0.37 10.03 -39.64 -0.40 -0.76 16 6 C -0.09 -0.29 10.04 -39.49 -0.40 -0.69 16 7 C -0.10 -0.43 9.66 -39.64 -0.38 -0.81 16 8 C -0.06 -0.36 5.28 -104.21 -0.55 -0.91 16 9 C 0.16 1.26 4.46 -5.19 -0.02 1.23 16 10 N -0.75 -7.66 5.72 -59.82 -0.34 -8.00 16 11 C 0.25 3.36 6.65 -83.81 -0.56 2.80 16 12 C -0.24 -3.19 9.31 -39.35 -0.37 -3.56 16 13 C -0.04 -0.52 10.03 -39.63 -0.40 -0.91 16 14 C -0.26 -4.39 9.04 -39.39 -0.36 -4.75 16 15 C 0.19 3.49 6.68 -39.24 -0.26 3.23 16 16 O -0.32 -6.84 10.13 -19.42 -0.20 -7.04 16 17 C 0.07 1.48 4.68 37.16 0.17 1.65 16 18 C 0.02 0.66 5.34 -27.89 -0.15 0.51 16 19 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 20 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 22 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 23 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 C -0.23 -3.82 9.83 -39.24 -0.39 -4.20 16 28 H 0.13 0.45 8.06 -52.49 -0.42 0.02 16 29 H 0.13 0.14 8.06 -52.48 -0.42 -0.28 16 30 H 0.13 0.15 8.06 -52.49 -0.42 -0.27 16 31 H 0.14 0.41 8.03 -52.49 -0.42 -0.01 16 32 H 0.07 0.59 7.29 -51.93 -0.38 0.21 16 33 H 0.08 0.50 7.81 -51.93 -0.41 0.09 16 34 H 0.40 3.83 8.47 -40.82 -0.35 3.49 16 35 H 0.11 1.22 6.73 -52.49 -0.35 0.87 16 36 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 37 H 0.13 2.10 6.29 -52.49 -0.33 1.77 16 38 H 0.05 1.09 7.67 -51.93 -0.40 0.69 16 39 H 0.05 1.09 7.65 -51.93 -0.40 0.69 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.12 1.93 8.06 -52.48 -0.42 1.50 16 LS Contribution 376.20 15.07 5.67 5.67 Total: -1.00 -33.63 376.20 -9.68 -43.31 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -5.53 Total: 0.11 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -5.77 Total: -20.12 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 1.17 Total: -38.52 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -0.20 Total: -7.04 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.63 -9.68 -43.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604008839.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.093 kcal (2) G-P(sol) polarization free energy of solvation -33.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds