Wall clock time and date at job start Tue Mar 31 2020 13:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39653 * 120.14983 * 345.57339 * 3 2 1 5 5 C 1.37926 * 119.84363 * 180.25496 * 4 3 2 6 6 C 1.38384 * 120.15203 * 359.74543 * 5 4 3 7 7 C 1.38346 * 120.30673 * 0.02562 * 6 5 4 8 8 C 1.37972 * 120.14906 * 359.97438 * 7 6 5 9 9 C 1.50703 * 120.07425 * 180.02562 * 8 7 6 10 10 N 1.46502 * 109.47002 * 260.00243 * 9 8 7 11 11 C 1.39663 * 119.99806 * 180.02562 * 10 9 8 12 12 C 1.38973 * 120.04649 * 0.02562 * 11 10 9 13 13 C 1.38116 * 120.03003 * 179.97438 * 12 11 10 14 14 C 1.38216 * 120.13578 * 359.74695 * 13 12 11 15 15 C 1.38779 * 120.08401 * 0.51068 * 14 13 12 16 16 O 1.35897 * 120.00949 * 179.76812 * 15 14 13 17 17 C 1.42898 * 117.00481 * 359.71829 * 16 15 14 18 18 C 1.52997 * 109.47319 * 180.02562 * 17 16 15 19 19 C 1.50697 * 109.47466 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99890 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00428 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99563 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00432 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46616 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47104 * 119.99966 * 23 21 19 26 26 H 1.48489 * 109.47200 * 240.00246 * 23 21 19 27 27 C 1.38609 * 119.96517 * 359.48769 * 15 14 13 28 28 H 1.07997 * 120.07916 * 359.97438 * 4 3 2 29 29 H 1.08003 * 119.92493 * 179.77134 * 5 4 3 30 30 H 1.07996 * 119.84837 * 180.02562 * 6 5 4 31 31 H 1.08001 * 119.92530 * 179.97438 * 7 6 5 32 32 H 1.09001 * 109.46841 * 140.00365 * 9 8 7 33 33 H 1.09000 * 109.46773 * 20.00009 * 9 8 7 34 34 H 0.97001 * 119.99801 * 359.97438 * 10 9 8 35 35 H 1.07996 * 119.98294 * 0.02562 * 12 11 10 36 36 H 1.08007 * 119.92769 * 180.02562 * 13 12 11 37 37 H 1.07991 * 119.95689 * 180.26971 * 14 13 12 38 38 H 1.09002 * 109.47259 * 300.00417 * 17 16 15 39 39 H 1.09001 * 109.47074 * 60.00439 * 17 16 15 40 40 H 1.09002 * 109.47153 * 300.00307 * 18 17 16 41 41 H 1.08998 * 109.47533 * 59.99936 * 18 17 16 42 42 H 0.97002 * 119.99731 * 180.02562 * 22 21 19 43 43 H 1.08006 * 120.06150 * 180.23058 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2700 -1.1686 0.3009 5 6 4.6492 -1.1595 0.3042 6 6 5.3374 0.0033 0.0052 7 6 4.6483 1.1639 -0.2984 8 6 3.2687 1.1690 -0.3054 9 6 2.5198 2.4340 -0.6369 10 7 2.0636 3.0702 0.6014 11 6 1.3414 4.2644 0.5480 12 6 1.0545 4.8497 -0.6794 13 6 0.3397 6.0304 -0.7319 14 6 -0.0964 6.6300 0.4346 15 6 0.1919 6.0529 1.6633 16 8 -0.2336 6.6462 2.8095 17 6 -0.9670 7.8653 2.6755 18 6 -1.3578 8.3805 4.0621 19 6 -2.1317 9.6658 3.9208 20 1 -2.3258 10.0742 2.9400 21 6 -2.5929 10.3199 5.0435 22 7 -2.3569 9.8223 6.2379 23 14 -3.5516 11.9135 4.8684 24 1 -3.6803 12.2580 3.4297 25 1 -4.9035 11.7453 5.4595 26 1 -2.8338 13.0034 5.5767 27 6 0.9088 4.8680 1.7205 28 1 2.7341 -2.0766 0.5348 29 1 5.1934 -2.0620 0.5403 30 1 6.4173 0.0047 0.0088 31 1 5.1917 2.0680 -0.5305 32 1 1.6587 2.1937 -1.2605 33 1 3.1787 3.1160 -1.1744 34 1 2.2626 2.6616 1.4584 35 1 1.3898 4.3807 -1.5926 36 1 0.1173 6.4837 -1.6867 37 1 -0.6587 7.5509 0.3900 38 1 -0.3477 8.6086 2.1734 39 1 -1.8670 7.6851 2.0876 40 1 -1.9769 7.6373 4.5646 41 1 -0.4577 8.5607 4.6498 42 1 -2.6817 10.2822 7.0277 43 1 1.1308 4.4155 2.6758 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604008839.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:29 Heat of formation + Delta-G solvation = 16.666199 kcal Electronic energy + Delta-G solvation = -24376.838497 eV Core-core repulsion = 20772.068435 eV Total energy + Delta-G solvation = -3604.770062 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.14449 -40.63766 -38.97728 -37.52618 -36.30967 -35.42444 -33.00009 -32.56618 -32.26919 -30.85992 -29.56774 -27.28213 -26.56951 -24.67412 -23.92558 -23.43869 -22.42331 -21.77199 -19.72618 -19.40188 -18.37082 -17.62218 -16.97808 -16.94648 -16.79797 -16.66325 -16.55941 -16.23713 -15.63528 -15.34438 -14.98150 -14.86863 -14.51774 -14.34779 -14.20210 -14.12856 -14.08182 -13.91530 -13.84563 -13.26639 -13.19209 -13.07840 -12.70325 -12.53393 -12.48815 -12.30604 -12.06967 -11.92605 -11.68192 -11.55666 -11.38181 -10.92169 -10.63844 -9.93254 -9.89342 -9.25134 -8.40891 -8.27726 -6.41481 -0.25240 0.30867 0.53972 0.66041 1.40040 1.41445 1.55080 1.59804 1.95677 2.15526 2.38677 2.67515 2.83408 2.93115 3.01623 3.06485 3.52326 3.82124 3.96555 4.14705 4.23399 4.25656 4.27106 4.32034 4.34584 4.43429 4.49905 4.52605 4.62504 4.65270 4.73155 4.78801 4.95589 5.02032 5.24777 5.31038 5.35132 5.42998 5.45446 5.49132 5.51887 5.59949 5.64442 5.73499 5.89377 6.05884 6.33001 6.41970 6.58277 6.70386 6.73442 7.28540 8.85771 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.024874 B = 0.001897 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.383925 B =14759.025292 C =14942.698078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.268 3.732 3 C -0.034 4.034 4 C -0.074 4.074 5 C -0.109 4.109 6 C -0.083 4.083 7 C -0.099 4.099 8 C -0.064 4.064 9 C 0.160 3.840 10 N -0.737 5.737 11 C 0.253 3.747 12 C -0.236 4.236 13 C -0.032 4.032 14 C -0.280 4.280 15 C 0.152 3.848 16 O -0.343 6.343 17 C 0.086 3.914 18 C 0.028 3.972 19 C -0.545 4.545 20 H 0.071 0.929 21 C -0.001 4.001 22 N -0.931 5.931 23 Si 0.979 3.021 24 H -0.257 1.257 25 H -0.277 1.277 26 H -0.275 1.275 27 C -0.252 4.252 28 H 0.144 0.856 29 H 0.162 0.838 30 H 0.161 0.839 31 H 0.154 0.846 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.402 0.598 35 H 0.146 0.854 36 H 0.151 0.849 37 H 0.123 0.877 38 H 0.061 0.939 39 H 0.057 0.943 40 H -0.004 1.004 41 H -0.001 1.001 42 H 0.267 0.733 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.738 -22.986 -18.917 36.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.046 4.046 3 C -0.038 4.038 4 C -0.094 4.094 5 C -0.127 4.127 6 C -0.101 4.101 7 C -0.117 4.117 8 C -0.068 4.068 9 C 0.036 3.964 10 N -0.367 5.367 11 C 0.149 3.851 12 C -0.259 4.259 13 C -0.050 4.050 14 C -0.301 4.301 15 C 0.105 3.895 16 O -0.257 6.257 17 C 0.012 3.988 18 C -0.009 4.009 19 C -0.583 4.583 20 H 0.089 0.911 21 C -0.199 4.199 22 N -0.571 5.571 23 Si 0.802 3.198 24 H -0.181 1.181 25 H -0.203 1.203 26 H -0.201 1.201 27 C -0.276 4.276 28 H 0.162 0.838 29 H 0.180 0.820 30 H 0.179 0.821 31 H 0.171 0.829 32 H 0.075 0.925 33 H 0.116 0.884 34 H 0.238 0.762 35 H 0.164 0.836 36 H 0.169 0.831 37 H 0.141 0.859 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.015 0.985 41 H 0.018 0.982 42 H 0.076 0.924 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 19.016 -23.090 -18.740 35.298 hybrid contribution -0.590 0.752 0.890 1.306 sum 18.426 -22.339 -17.850 34.017 Atomic orbital electron populations 1.81328 1.13858 1.08850 1.10083 1.26184 0.93249 0.92474 0.92738 1.16103 0.82787 0.96604 1.08292 1.21435 0.95400 0.96214 0.96381 1.21540 0.92850 1.00121 0.98141 1.21842 1.02195 0.91677 0.94436 1.21333 0.91646 1.00332 0.98437 1.19827 0.94732 0.92405 0.99786 1.20371 0.97792 0.91510 0.86681 1.44623 1.60268 1.23023 1.08754 1.17386 0.89221 0.85916 0.92570 1.20762 1.09243 0.99610 0.96271 1.20979 0.92810 0.93554 0.97667 1.21240 1.11640 1.04846 0.92378 1.19145 0.92510 0.92185 0.85611 1.86054 1.69321 1.39593 1.30702 1.22851 0.93772 0.82288 0.99912 1.18977 0.95534 0.95318 0.91104 1.21427 1.35454 1.07558 0.93849 0.91097 1.26080 0.97113 1.02073 0.94620 1.70137 1.46917 1.41346 0.98664 0.85199 0.77817 0.77814 0.78994 1.18112 1.20254 1.20062 1.19766 1.11053 0.98366 0.98399 0.83840 0.82035 0.82127 0.82878 0.92496 0.88371 0.76248 0.83584 0.83115 0.85944 0.92048 0.92437 0.98535 0.98240 0.92429 0.86232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -12.58 18.54 19.01 0.35 -12.23 16 2 C 0.27 5.36 14.00 88.33 1.24 6.60 16 3 C -0.03 -0.42 5.73 -21.36 -0.12 -0.54 16 4 C -0.07 -0.53 9.76 22.54 0.22 -0.31 16 5 C -0.11 -0.29 10.03 22.23 0.22 -0.07 16 6 C -0.08 -0.18 10.04 22.33 0.22 0.04 16 7 C -0.10 -0.51 9.66 22.23 0.21 -0.29 16 8 C -0.06 -0.65 5.28 -19.59 -0.10 -0.76 16 9 C 0.16 2.13 4.46 85.63 0.38 2.51 16 10 N -0.74 -14.27 5.72 -343.18 -1.96 -16.23 16 11 C 0.25 6.70 6.65 38.20 0.25 6.95 16 12 C -0.24 -5.68 9.31 22.42 0.21 -5.47 16 13 C -0.03 -0.83 10.03 22.24 0.22 -0.61 16 14 C -0.28 -9.45 9.04 22.39 0.20 -9.25 16 15 C 0.15 5.88 6.68 22.49 0.15 6.03 16 16 O -0.34 -15.76 10.13 -92.39 -0.94 -16.70 16 17 C 0.09 4.03 4.68 71.98 0.34 4.37 16 18 C 0.03 1.59 5.34 29.85 0.16 1.75 16 19 C -0.55 -31.76 9.11 25.60 0.23 -31.53 16 20 H 0.07 3.87 7.74 -2.91 -0.02 3.84 16 21 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 22 N -0.93 -57.94 13.29 21.45 0.28 -57.66 16 23 Si 0.98 44.53 29.54 68.60 2.03 46.56 16 24 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 25 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 26 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 27 C -0.25 -8.46 9.83 22.49 0.22 -8.24 16 28 H 0.14 0.70 8.06 -2.91 -0.02 0.67 16 29 H 0.16 -0.40 8.06 -2.91 -0.02 -0.43 16 30 H 0.16 -0.48 8.06 -2.91 -0.02 -0.51 16 31 H 0.15 0.29 8.03 -2.91 -0.02 0.26 16 32 H 0.06 0.91 7.29 -2.39 -0.02 0.89 16 33 H 0.10 0.93 7.81 -2.39 -0.02 0.91 16 34 H 0.40 7.46 8.47 -92.71 -0.79 6.67 16 35 H 0.15 2.57 6.73 -2.91 -0.02 2.55 16 36 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 37 H 0.12 4.11 6.29 -2.91 -0.02 4.10 16 38 H 0.06 2.70 7.67 -2.39 -0.02 2.68 16 39 H 0.06 2.56 7.65 -2.39 -0.02 2.55 16 40 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 41 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 42 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 43 H 0.12 3.95 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -77.34 376.20 4.74 -72.60 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.25 Total: 12.05 kcal Atomic # 6 Polarization: -33.11 SS G_CDS: 4.73 Total: -28.39 kcal Atomic # 7 Polarization: -84.79 SS G_CDS: -1.33 Total: -86.12 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.94 Total: -16.70 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -77.34 4.74 -72.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604008839.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.263 kcal (2) G-P(sol) polarization free energy of solvation -77.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds