Wall clock time and date at job start Tue Mar 31 2020 13:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86802 * 119.99634 * 2 1 4 4 H 1.48502 * 109.46998 * 270.00229 * 3 2 1 5 5 H 1.48493 * 109.47239 * 30.00102 * 3 2 1 6 6 H 1.48499 * 109.46943 * 150.00199 * 3 2 1 7 7 C 1.40028 * 120.00454 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00432 * 189.01009 * 7 2 1 9 9 C 1.41543 * 119.99831 * 9.00761 * 7 2 1 10 10 C 1.41177 * 120.99706 * 207.36724 * 9 7 2 11 11 C 1.37584 * 119.01984 * 179.97438 * 10 9 7 12 12 N 1.32088 * 121.10742 * 359.72640 * 11 10 9 13 13 C 1.32475 * 122.22718 * 0.56736 * 12 11 10 14 14 N 1.39465 * 119.57806 * 179.71141 * 13 12 11 15 15 C 1.34780 * 120.00093 * 5.05805 * 14 13 12 16 16 O 1.21281 * 119.99688 * 355.57095 * 15 14 13 17 17 C 1.50704 * 120.00188 * 175.85296 * 15 14 13 18 18 C 1.52996 * 109.47035 * 183.76623 * 17 15 14 19 19 H 1.09000 * 110.27084 * 55.97063 * 18 17 15 20 20 C 1.54350 * 110.30464 * 293.89424 * 18 17 15 21 21 C 1.54347 * 102.39311 * 214.72791 * 20 18 17 22 22 C 1.51377 * 105.16952 * 26.34671 * 21 20 18 23 23 C 1.38493 * 130.39411 * 162.81893 * 22 21 20 24 24 C 1.38522 * 120.10004 * 179.84061 * 23 22 21 25 25 C 1.38253 * 119.98382 * 0.14887 * 24 23 22 26 26 C 1.38103 * 119.93215 * 359.88440 * 25 24 23 27 27 C 1.38383 * 109.77820 * 342.73523 * 22 21 20 28 28 C 1.38598 * 120.84080 * 359.43195 * 13 12 11 29 29 H 0.96992 * 120.00277 * 0.02562 * 1 2 3 30 30 H 1.08006 * 120.48776 * 359.97438 * 10 9 7 31 31 H 1.08002 * 119.45039 * 180.02562 * 11 10 9 32 32 H 0.96995 * 120.00255 * 185.06421 * 14 13 12 33 33 H 1.09001 * 109.46701 * 303.76472 * 17 15 14 34 34 H 1.08998 * 109.47092 * 63.76548 * 17 15 14 35 35 H 1.09003 * 110.82423 * 332.95304 * 20 18 17 36 36 H 1.09002 * 110.82352 * 96.30307 * 20 18 17 37 37 H 1.09002 * 110.30259 * 145.26563 * 21 20 18 38 38 H 1.08998 * 110.30364 * 267.32421 * 21 20 18 39 39 H 1.07998 * 119.89356 * 0.02562 * 23 22 21 40 40 H 1.07999 * 119.98189 * 180.02562 * 24 23 22 41 41 H 1.08003 * 120.03383 * 179.90779 * 25 24 23 42 42 H 1.08003 * 119.89168 * 179.97438 * 26 25 24 43 43 H 1.07997 * 120.60089 * 180.25534 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4887 2.0465 -1.4001 5 1 1.4388 2.6527 0.7000 6 1 3.5389 1.4403 0.7000 7 6 2.0077 -1.2126 -0.0005 8 1 3.0776 -1.2185 0.1459 9 6 1.3131 -2.4308 -0.1930 10 6 1.8059 -3.6410 0.3414 11 6 1.0976 -4.8014 0.1301 12 7 -0.0310 -4.7966 -0.5562 13 6 -0.5329 -3.6895 -1.0829 14 7 -1.7260 -3.7490 -1.8026 15 6 -2.4136 -4.9060 -1.8730 16 8 -1.9556 -5.9145 -1.3789 17 6 -3.7485 -4.9481 -2.5712 18 6 -4.3553 -6.3451 -2.4276 19 1 -4.4304 -6.6179 -1.3750 20 6 -3.5016 -7.3809 -3.1897 21 6 -4.5665 -8.3701 -3.7092 22 6 -5.8398 -7.5591 -3.8201 23 6 -7.0120 -7.8187 -4.5106 24 6 -8.0618 -6.9164 -4.4612 25 6 -7.9389 -5.7531 -3.7242 26 6 -6.7700 -5.4936 -3.0361 27 6 -5.7195 -6.3950 -3.0817 28 6 0.1096 -2.4719 -0.9228 29 1 -0.4850 0.8400 -0.0004 30 1 2.7254 -3.6557 0.9079 31 1 1.4680 -5.7311 0.5361 32 1 -2.0609 -2.9577 -2.2527 33 1 -4.4168 -4.2136 -2.1217 34 1 -3.6132 -4.7175 -3.6279 35 1 -2.9716 -6.9116 -4.0186 36 1 -2.8026 -7.8774 -2.5166 37 1 -4.2783 -8.7572 -4.6865 38 1 -4.6984 -9.1893 -3.0024 39 1 -7.1078 -8.7278 -5.0857 40 1 -8.9751 -7.1209 -5.0001 41 1 -8.7564 -5.0483 -3.6864 42 1 -6.6746 -4.5844 -2.4609 43 1 -0.3051 -1.5710 -1.3503 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610791492.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:46 Heat of formation + Delta-G solvation = 16.241954 kcal Electronic energy + Delta-G solvation = -25529.975139 eV Core-core repulsion = 21925.186680 eV Total energy + Delta-G solvation = -3604.788459 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.47459 -39.38941 -37.82312 -35.83356 -34.28346 -33.69395 -32.31889 -30.57352 -30.07292 -28.90849 -28.37088 -26.01255 -25.30404 -22.70442 -22.01861 -21.71883 -21.01945 -20.25192 -19.42702 -17.65811 -17.08281 -16.39878 -15.72860 -15.43047 -15.32354 -15.10070 -14.89231 -14.70308 -14.20502 -13.96501 -13.53780 -13.36403 -13.15725 -13.00460 -12.71787 -12.64596 -12.58854 -12.27293 -11.86000 -11.54250 -11.38270 -11.24049 -11.22370 -10.95225 -10.91399 -10.78614 -10.71280 -10.28099 -10.13013 -9.73226 -9.40209 -9.31249 -8.91727 -8.60489 -7.97106 -7.73333 -7.02656 -6.76211 -4.64029 1.23982 1.26653 2.55508 2.78398 3.01030 3.04411 3.19296 3.47950 3.58843 3.71367 3.84831 4.32868 4.50846 4.68465 4.85110 4.87554 4.91518 5.02578 5.15849 5.19882 5.39084 5.42406 5.47918 5.50421 5.66621 5.70899 5.82270 5.88489 5.96975 6.01561 6.05437 6.23068 6.28713 6.37507 6.44816 6.57584 6.59255 6.65371 6.79311 6.88321 6.95075 7.11994 7.37917 7.46517 7.78165 7.95011 8.21927 8.42651 8.69751 8.74835 8.91096 9.67474 10.09677 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.022000 B = 0.002527 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.428083 B =11078.060655 C =12150.167483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.075 3.925 3 Si 0.915 3.085 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.455 4.455 8 H 0.081 0.919 9 C 0.141 3.859 10 C -0.281 4.281 11 C 0.116 3.884 12 N -0.551 5.551 13 C 0.335 3.665 14 N -0.660 5.660 15 C 0.497 3.503 16 O -0.479 6.479 17 C -0.133 4.133 18 C -0.031 4.031 19 H 0.094 0.906 20 C -0.107 4.107 21 C -0.085 4.085 22 C -0.093 4.093 23 C -0.111 4.111 24 C -0.124 4.124 25 C -0.123 4.123 26 C -0.106 4.106 27 C -0.088 4.088 28 C -0.238 4.238 29 H 0.281 0.719 30 H 0.102 0.898 31 H 0.123 0.877 32 H 0.407 0.593 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.472 -7.252 -8.655 17.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.487 4.487 8 H 0.099 0.901 9 C 0.133 3.867 10 C -0.305 4.305 11 C -0.038 4.038 12 N -0.270 5.270 13 C 0.110 3.890 14 N -0.306 5.306 15 C 0.282 3.718 16 O -0.350 6.350 17 C -0.173 4.173 18 C -0.050 4.050 19 H 0.112 0.888 20 C -0.145 4.145 21 C -0.122 4.122 22 C -0.093 4.093 23 C -0.129 4.129 24 C -0.142 4.142 25 C -0.141 4.141 26 C -0.124 4.124 27 C -0.088 4.088 28 C -0.264 4.264 29 H 0.092 0.908 30 H 0.120 0.880 31 H 0.141 0.859 32 H 0.242 0.758 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.861 -8.666 -8.417 18.387 hybrid contribution 0.470 2.223 -0.028 2.272 sum -13.391 -6.443 -8.446 17.093 Atomic orbital electron populations 1.69738 1.07533 1.29153 1.35870 1.25942 0.94891 1.01414 0.92053 0.86197 0.80364 0.80189 0.79305 1.19262 1.20217 1.18551 1.19575 0.95655 0.89942 1.43525 0.90080 1.17600 0.90396 0.92280 0.86429 1.21941 1.04166 0.94590 1.09825 1.21770 0.90503 0.96486 0.95085 1.67229 1.14668 1.28186 1.16913 1.18240 0.86502 0.90832 0.93424 1.43495 1.22289 1.13063 1.51771 1.20626 0.86332 0.83725 0.81131 1.90757 1.68322 1.32375 1.43499 1.21766 0.94882 0.98681 1.02000 1.20431 0.89753 0.94228 1.00578 0.88779 1.22350 0.96688 0.95680 0.99763 1.21132 0.91505 0.97913 1.01672 1.20721 0.95494 0.96137 0.96982 1.20723 0.92640 0.99621 0.99948 1.21104 0.98502 0.94692 0.99916 1.21019 0.97529 0.97546 0.98018 1.20677 0.92697 0.99193 0.99860 1.20690 0.95562 0.94900 0.97607 1.21667 1.01180 0.95416 1.08121 0.90839 0.87988 0.85903 0.75835 0.89188 0.89010 0.91328 0.89061 0.90908 0.90230 0.86427 0.86162 0.86042 0.86161 0.85052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.57 10.73 55.55 0.60 -18.97 16 2 C 0.07 1.80 5.32 -17.34 -0.09 1.71 16 3 Si 0.92 17.94 29.57 -169.99 -5.03 12.91 16 4 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.46 -11.67 9.13 -37.65 -0.34 -12.01 16 8 H 0.08 1.99 7.86 -52.49 -0.41 1.58 16 9 C 0.14 3.71 5.59 -106.55 -0.60 3.11 16 10 C -0.28 -6.89 9.90 -38.71 -0.38 -7.27 16 11 C 0.12 2.77 11.15 -17.68 -0.20 2.58 16 12 N -0.55 -13.90 7.85 -12.52 -0.10 -14.00 16 13 C 0.33 8.03 7.42 -154.70 -1.15 6.89 16 14 N -0.66 -12.66 5.39 -11.49 -0.06 -12.72 16 15 C 0.50 8.93 7.60 -10.98 -0.08 8.85 16 16 O -0.48 -10.34 12.86 5.56 0.07 -10.27 16 17 C -0.13 -1.70 4.99 -27.88 -0.14 -1.84 16 18 C -0.03 -0.40 2.51 -90.74 -0.23 -0.63 16 19 H 0.09 1.33 8.06 -51.93 -0.42 0.91 16 20 C -0.11 -1.35 5.56 -25.32 -0.14 -1.49 16 21 C -0.09 -0.90 6.77 -26.84 -0.18 -1.08 16 22 C -0.09 -1.05 6.14 -104.14 -0.64 -1.69 16 23 C -0.11 -1.10 10.06 -39.38 -0.40 -1.50 16 24 C -0.12 -1.14 10.06 -39.47 -0.40 -1.54 16 25 C -0.12 -1.16 10.05 -39.63 -0.40 -1.56 16 26 C -0.11 -1.13 9.72 -39.53 -0.38 -1.51 16 27 C -0.09 -1.03 5.61 -104.15 -0.58 -1.61 16 28 C -0.24 -6.01 8.60 -38.48 -0.33 -6.34 16 29 H 0.28 6.25 8.29 -40.82 -0.34 5.91 16 30 H 0.10 2.29 8.06 -52.48 -0.42 1.87 16 31 H 0.12 2.56 8.06 -52.49 -0.42 2.14 16 32 H 0.41 6.40 8.70 -40.82 -0.35 6.05 16 33 H 0.09 0.99 7.74 -51.93 -0.40 0.59 16 34 H 0.09 1.03 8.06 -51.93 -0.42 0.61 16 35 H 0.07 0.87 7.86 -51.93 -0.41 0.46 16 36 H 0.09 1.30 7.45 -51.93 -0.39 0.92 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 40 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 42 H 0.12 1.11 7.76 -52.48 -0.41 0.70 16 43 H 0.13 3.29 6.16 -52.49 -0.32 2.97 16 LS Contribution 358.42 15.07 5.40 5.40 Total: -1.00 -30.89 358.42 -11.41 -42.29 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -5.63 Total: 12.31 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -6.66 Total: -16.96 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.44 Total: -45.70 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.07 Total: -10.27 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.89 -11.41 -42.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610791492.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.536 kcal (2) G-P(sol) polarization free energy of solvation -30.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds