Wall clock time and date at job start Tue Mar 31 2020 13:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86802 * 119.99634 * 2 1 4 4 H 1.48502 * 109.46998 * 270.00229 * 3 2 1 5 5 H 1.48493 * 109.47239 * 30.00102 * 3 2 1 6 6 H 1.48499 * 109.46943 * 150.00199 * 3 2 1 7 7 C 1.40028 * 120.00454 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00432 * 189.01009 * 7 2 1 9 9 C 1.41543 * 119.99831 * 9.00761 * 7 2 1 10 10 C 1.41177 * 120.99706 * 207.36724 * 9 7 2 11 11 C 1.37584 * 119.01984 * 179.97438 * 10 9 7 12 12 N 1.32088 * 121.10742 * 359.72640 * 11 10 9 13 13 C 1.32475 * 122.22718 * 0.56736 * 12 11 10 14 14 N 1.39465 * 119.57806 * 179.71141 * 13 12 11 15 15 C 1.34780 * 120.00093 * 5.05805 * 14 13 12 16 16 O 1.21281 * 119.99688 * 355.57095 * 15 14 13 17 17 C 1.50704 * 120.00188 * 175.85296 * 15 14 13 18 18 C 1.52996 * 109.47035 * 183.76623 * 17 15 14 19 19 H 1.09000 * 110.27084 * 55.97063 * 18 17 15 20 20 C 1.54350 * 110.30464 * 293.89424 * 18 17 15 21 21 C 1.54347 * 102.39311 * 214.72791 * 20 18 17 22 22 C 1.51377 * 105.16952 * 26.34671 * 21 20 18 23 23 C 1.38493 * 130.39411 * 162.81893 * 22 21 20 24 24 C 1.38522 * 120.10004 * 179.84061 * 23 22 21 25 25 C 1.38253 * 119.98382 * 0.14887 * 24 23 22 26 26 C 1.38103 * 119.93215 * 359.88440 * 25 24 23 27 27 C 1.38383 * 109.77820 * 342.73523 * 22 21 20 28 28 C 1.38598 * 120.84080 * 359.43195 * 13 12 11 29 29 H 0.96992 * 120.00277 * 0.02562 * 1 2 3 30 30 H 1.08006 * 120.48776 * 359.97438 * 10 9 7 31 31 H 1.08002 * 119.45039 * 180.02562 * 11 10 9 32 32 H 0.96995 * 120.00255 * 185.06421 * 14 13 12 33 33 H 1.09001 * 109.46701 * 303.76472 * 17 15 14 34 34 H 1.08998 * 109.47092 * 63.76548 * 17 15 14 35 35 H 1.09003 * 110.82423 * 332.95304 * 20 18 17 36 36 H 1.09002 * 110.82352 * 96.30307 * 20 18 17 37 37 H 1.09002 * 110.30259 * 145.26563 * 21 20 18 38 38 H 1.08998 * 110.30364 * 267.32421 * 21 20 18 39 39 H 1.07998 * 119.89356 * 0.02562 * 23 22 21 40 40 H 1.07999 * 119.98189 * 180.02562 * 24 23 22 41 41 H 1.08003 * 120.03383 * 179.90779 * 25 24 23 42 42 H 1.08003 * 119.89168 * 179.97438 * 26 25 24 43 43 H 1.07997 * 120.60089 * 180.25534 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4887 2.0465 -1.4001 5 1 1.4388 2.6527 0.7000 6 1 3.5389 1.4403 0.7000 7 6 2.0077 -1.2126 -0.0005 8 1 3.0776 -1.2185 0.1459 9 6 1.3131 -2.4308 -0.1930 10 6 1.8059 -3.6410 0.3414 11 6 1.0976 -4.8014 0.1301 12 7 -0.0310 -4.7966 -0.5562 13 6 -0.5329 -3.6895 -1.0829 14 7 -1.7260 -3.7490 -1.8026 15 6 -2.4136 -4.9060 -1.8730 16 8 -1.9556 -5.9145 -1.3789 17 6 -3.7485 -4.9481 -2.5712 18 6 -4.3553 -6.3451 -2.4276 19 1 -4.4304 -6.6179 -1.3750 20 6 -3.5016 -7.3809 -3.1897 21 6 -4.5665 -8.3701 -3.7092 22 6 -5.8398 -7.5591 -3.8201 23 6 -7.0120 -7.8187 -4.5106 24 6 -8.0618 -6.9164 -4.4612 25 6 -7.9389 -5.7531 -3.7242 26 6 -6.7700 -5.4936 -3.0361 27 6 -5.7195 -6.3950 -3.0817 28 6 0.1096 -2.4719 -0.9228 29 1 -0.4850 0.8400 -0.0004 30 1 2.7254 -3.6557 0.9079 31 1 1.4680 -5.7311 0.5361 32 1 -2.0609 -2.9577 -2.2527 33 1 -4.4168 -4.2136 -2.1217 34 1 -3.6132 -4.7175 -3.6279 35 1 -2.9716 -6.9116 -4.0186 36 1 -2.8026 -7.8774 -2.5166 37 1 -4.2783 -8.7572 -4.6865 38 1 -4.6984 -9.1893 -3.0024 39 1 -7.1078 -8.7278 -5.0857 40 1 -8.9751 -7.1209 -5.0001 41 1 -8.7564 -5.0483 -3.6864 42 1 -6.6746 -4.5844 -2.4609 43 1 -0.3051 -1.5710 -1.3503 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610791492.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:45 Heat of formation + Delta-G solvation = 1.413000 kcal Electronic energy + Delta-G solvation = -25530.618171 eV Core-core repulsion = 21925.186680 eV Total energy + Delta-G solvation = -3605.431491 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.55969 -40.79831 -39.47807 -36.78343 -36.04198 -35.41591 -33.26026 -32.43575 -31.19268 -30.11065 -29.56630 -27.91160 -26.39809 -23.84597 -23.51106 -23.33580 -21.85019 -21.53704 -20.75448 -19.44229 -18.46576 -17.62888 -17.16328 -16.95951 -16.43294 -16.17582 -16.05911 -15.95300 -15.73632 -15.56129 -14.95660 -14.64409 -14.51647 -14.32937 -14.02634 -13.81106 -13.70246 -13.52377 -13.16698 -12.88290 -12.87342 -12.69803 -12.48694 -12.11160 -12.01616 -11.88938 -11.82699 -11.71074 -11.59258 -11.45706 -11.17151 -10.88583 -9.90849 -9.68391 -9.58834 -9.39163 -8.84674 -8.58598 -6.58307 0.46844 0.51808 0.75141 0.99999 1.41141 1.53378 1.55576 1.92509 2.18475 2.20964 2.83136 2.88279 3.43706 3.53689 3.73819 3.85557 3.89195 4.06186 4.20472 4.23935 4.27654 4.37416 4.49102 4.54036 4.60783 4.70142 4.76114 4.85818 4.88967 4.92542 4.93926 4.99879 5.10210 5.16381 5.17228 5.24315 5.31418 5.33964 5.48320 5.61120 5.65686 5.66653 5.79727 5.93010 6.15151 6.16176 6.49222 6.62876 6.79604 6.84280 7.35797 7.84197 8.29906 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.022000 B = 0.002527 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.428083 B =11078.060655 C =12150.167483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.036 3.964 3 Si 0.990 3.010 4 H -0.260 1.260 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.485 4.485 8 H 0.082 0.918 9 C 0.111 3.889 10 C -0.296 4.296 11 C 0.111 3.889 12 N -0.574 5.574 13 C 0.333 3.667 14 N -0.655 5.655 15 C 0.494 3.506 16 O -0.517 6.517 17 C -0.117 4.117 18 C -0.028 4.028 19 H 0.073 0.927 20 C -0.108 4.108 21 C -0.079 4.079 22 C -0.108 4.108 23 C -0.118 4.118 24 C -0.124 4.124 25 C -0.127 4.127 26 C -0.116 4.116 27 C -0.104 4.104 28 C -0.257 4.257 29 H 0.291 0.709 30 H 0.115 0.885 31 H 0.150 0.850 32 H 0.422 0.578 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.136 0.864 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.131 0.869 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.209 -6.288 -9.864 19.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.180 4.180 3 Si 0.811 3.189 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.516 4.516 8 H 0.100 0.900 9 C 0.103 3.897 10 C -0.320 4.320 11 C -0.043 4.043 12 N -0.294 5.294 13 C 0.107 3.893 14 N -0.303 5.303 15 C 0.281 3.719 16 O -0.390 6.390 17 C -0.157 4.157 18 C -0.047 4.047 19 H 0.091 0.909 20 C -0.145 4.145 21 C -0.116 4.116 22 C -0.108 4.108 23 C -0.136 4.136 24 C -0.141 4.141 25 C -0.144 4.144 26 C -0.134 4.134 27 C -0.104 4.104 28 C -0.282 4.282 29 H 0.102 0.898 30 H 0.133 0.867 31 H 0.167 0.833 32 H 0.259 0.741 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.154 0.846 40 H 0.164 0.836 41 H 0.163 0.837 42 H 0.149 0.851 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -15.631 -7.706 -9.644 19.917 hybrid contribution 0.932 1.873 0.350 2.121 sum -14.699 -5.833 -9.294 18.343 Atomic orbital electron populations 1.69778 1.08861 1.30728 1.35182 1.26814 0.95726 1.04517 0.90956 0.85072 0.78853 0.75411 0.79599 1.18444 1.19210 1.18372 1.19854 0.95969 0.90865 1.44883 0.89953 1.18047 0.91284 0.93320 0.87051 1.22119 1.04941 0.94476 1.10434 1.22224 0.90149 0.97445 0.94499 1.67366 1.15397 1.28764 1.17867 1.18499 0.87602 0.90224 0.92998 1.43575 1.21001 1.14446 1.51268 1.21557 0.87477 0.82520 0.80302 1.90740 1.69534 1.33613 1.45103 1.21747 0.91739 0.99604 1.02621 1.20321 0.90868 0.93973 0.99544 0.90916 1.22263 0.96862 0.96274 0.99150 1.21069 0.90834 0.97394 1.02326 1.20852 0.96142 0.96149 0.97628 1.21009 0.92249 1.00583 0.99746 1.21483 0.99152 0.94144 0.99367 1.21355 0.97655 0.98118 0.97304 1.20903 0.92831 0.99437 1.00228 1.20605 0.95226 0.95997 0.98572 1.21653 1.01689 0.95746 1.09131 0.89833 0.86682 0.83323 0.74053 0.86834 0.86779 0.91597 0.91561 0.89545 0.89969 0.84589 0.83569 0.83742 0.85139 0.85435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.27 10.73 21.84 0.23 -40.03 16 2 C 0.04 1.71 5.32 85.29 0.45 2.17 16 3 Si 0.99 36.12 29.57 68.60 2.03 38.15 16 4 H -0.26 -9.12 7.11 99.48 0.71 -8.42 16 5 H -0.27 -9.29 7.11 99.48 0.71 -8.58 16 6 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 7 C -0.48 -25.23 9.13 23.52 0.21 -25.02 16 8 H 0.08 4.11 7.86 -2.91 -0.02 4.08 16 9 C 0.11 5.99 5.59 -21.11 -0.12 5.87 16 10 C -0.30 -14.83 9.90 22.84 0.23 -14.60 16 11 C 0.11 5.39 11.15 84.50 0.94 6.33 16 12 N -0.57 -29.63 7.85 -193.53 -1.52 -31.15 16 13 C 0.33 16.32 7.42 132.75 0.98 17.31 16 14 N -0.66 -25.31 5.39 -308.65 -1.66 -26.98 16 15 C 0.49 17.87 7.60 87.66 0.67 18.54 16 16 O -0.52 -22.97 12.86 -3.03 -0.04 -23.01 16 17 C -0.12 -2.89 4.99 29.85 0.15 -2.74 16 18 C -0.03 -0.72 2.51 -10.87 -0.03 -0.75 16 19 H 0.07 2.13 8.06 -2.39 -0.02 2.11 16 20 C -0.11 -2.78 5.56 31.51 0.18 -2.60 16 21 C -0.08 -1.63 6.77 30.52 0.21 -1.43 16 22 C -0.11 -2.27 6.14 -19.55 -0.12 -2.39 16 23 C -0.12 -2.05 10.06 22.40 0.23 -1.83 16 24 C -0.12 -1.88 10.06 22.34 0.22 -1.66 16 25 C -0.13 -2.02 10.05 22.24 0.22 -1.80 16 26 C -0.12 -2.22 9.72 22.30 0.22 -2.00 16 27 C -0.10 -2.32 5.61 -19.56 -0.11 -2.43 16 28 C -0.26 -13.28 8.60 22.98 0.20 -13.09 16 29 H 0.29 12.78 8.29 -92.71 -0.77 12.01 16 30 H 0.12 5.27 8.06 -2.91 -0.02 5.25 16 31 H 0.15 6.23 8.06 -2.91 -0.02 6.21 16 32 H 0.42 13.17 8.70 -92.71 -0.81 12.36 16 33 H 0.11 2.29 7.74 -2.39 -0.02 2.27 16 34 H 0.11 2.36 8.06 -2.39 -0.02 2.34 16 35 H 0.07 1.69 7.86 -2.39 -0.02 1.67 16 36 H 0.07 2.01 7.45 -2.39 -0.02 1.99 16 37 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 40 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 41 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 42 H 0.13 2.12 7.76 -2.91 -0.02 2.10 16 43 H 0.13 6.56 6.16 -2.91 -0.02 6.54 16 Total: -1.00 -68.03 358.42 4.00 -64.03 By element: Atomic # 1 Polarization: 40.87 SS G_CDS: 0.23 Total: 41.10 kcal Atomic # 6 Polarization: -26.84 SS G_CDS: 4.73 Total: -22.11 kcal Atomic # 7 Polarization: -95.21 SS G_CDS: -2.95 Total: -98.16 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.04 Total: -23.01 kcal Atomic # 14 Polarization: 36.12 SS G_CDS: 2.03 Total: 38.15 kcal Total: -68.03 4.00 -64.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610791492.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.442 kcal (2) G-P(sol) polarization free energy of solvation -68.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds