Wall clock time and date at job start Tue Mar 31 2020 13:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86796 * 119.99724 * 2 1 4 4 H 1.48501 * 109.47192 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47387 * 299.99522 * 3 2 1 6 6 H 1.48499 * 109.47642 * 59.99683 * 3 2 1 7 7 C 1.40029 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99672 * 187.53136 * 7 2 1 9 9 C 1.41538 * 119.99966 * 7.51866 * 7 2 1 10 10 C 1.41175 * 120.99499 * 210.65763 * 9 7 2 11 11 C 1.37588 * 119.01285 * 180.02562 * 10 9 7 12 12 N 1.32078 * 121.11263 * 359.97438 * 11 10 9 13 13 C 1.32472 * 122.23172 * 0.02562 * 12 11 10 14 14 N 1.39466 * 119.58107 * 179.97438 * 13 12 11 15 15 C 1.34779 * 120.00021 * 354.88943 * 14 13 12 16 16 O 1.21268 * 119.99863 * 4.13392 * 15 14 13 17 17 C 1.50699 * 119.99460 * 184.13718 * 15 14 13 18 18 C 1.53002 * 109.46879 * 185.96613 * 17 15 14 19 19 H 1.09003 * 110.27065 * 303.99355 * 18 17 15 20 20 C 1.54351 * 110.30275 * 66.06740 * 18 17 15 21 21 C 1.54339 * 102.39373 * 145.36404 * 20 18 17 22 22 C 1.51368 * 105.17201 * 333.65372 * 21 20 18 23 23 C 1.38490 * 130.38699 * 197.19539 * 22 21 20 24 24 C 1.38118 * 120.21378 * 180.02562 * 23 22 21 25 25 C 1.38246 * 119.92857 * 359.97438 * 24 23 22 26 26 C 1.38100 * 119.94405 * 0.02562 * 25 24 23 27 27 C 1.38221 * 109.75891 * 17.19451 * 22 21 20 28 28 C 1.38598 * 120.83641 * 0.27787 * 13 12 11 29 29 H 0.96999 * 119.99973 * 0.02562 * 1 2 3 30 30 H 1.07995 * 120.49756 * 359.97438 * 10 9 7 31 31 H 1.08008 * 119.44742 * 180.02562 * 11 10 9 32 32 H 0.97005 * 119.99898 * 174.87880 * 14 13 12 33 33 H 1.09006 * 109.47686 * 65.96929 * 17 15 14 34 34 H 1.08992 * 109.47518 * 305.96707 * 17 15 14 35 35 H 1.08999 * 110.82237 * 263.59151 * 20 18 17 36 36 H 1.09004 * 110.81954 * 27.13609 * 20 18 17 37 37 H 1.09005 * 110.30186 * 92.57705 * 21 20 18 38 38 H 1.09000 * 110.30294 * 214.72766 * 21 20 18 39 39 H 1.07998 * 119.89878 * 0.02562 * 23 22 21 40 40 H 1.07993 * 120.03295 * 179.97438 * 24 23 22 41 41 H 1.08004 * 120.02983 * 180.02562 * 25 24 23 42 42 H 1.07998 * 119.89740 * 180.02562 * 26 25 24 43 43 H 1.08003 * 120.60035 * 179.72254 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.7013 1.3465 0.0006 5 1 1.8827 2.3964 -1.2125 6 1 1.8826 2.3966 1.2124 7 6 2.0076 -1.2127 0.0005 8 1 3.0806 -1.2166 0.1231 9 6 1.3090 -2.4332 -0.1593 10 6 1.7780 -3.6230 0.4387 11 6 1.0671 -4.7867 0.2562 12 7 -0.0394 -4.8047 -0.4648 13 6 -0.5213 -3.7164 -1.0465 14 7 -1.6945 -3.7986 -1.7962 15 6 -2.2742 -4.9962 -2.0113 16 8 -1.8187 -5.9925 -1.4913 17 6 -3.4885 -5.0969 -2.8981 18 6 -4.0334 -6.5260 -2.8563 19 1 -3.2554 -7.2352 -3.1390 20 6 -4.5701 -6.8535 -1.4467 21 6 -5.7706 -7.7732 -1.7548 22 6 -6.2258 -7.3786 -3.1434 23 6 -7.4191 -7.6270 -3.8009 24 6 -7.6142 -7.1615 -5.0866 25 6 -6.6157 -6.4449 -5.7197 26 6 -5.4251 -6.1963 -5.0657 27 6 -5.2276 -6.6621 -3.7764 28 6 0.1289 -2.4985 -0.9247 29 1 -0.4850 0.8400 -0.0004 30 1 2.6817 -3.6199 1.0299 31 1 1.4193 -5.7010 0.7109 32 1 -2.0932 -2.9938 -2.1627 33 1 -3.2130 -4.8429 -3.9218 34 1 -4.2541 -4.4057 -2.5459 35 1 -3.8188 -7.3809 -0.8589 36 1 -4.8970 -5.9474 -0.9364 37 1 -5.4599 -8.8180 -1.7412 38 1 -6.5701 -7.6061 -1.0329 39 1 -8.1997 -8.1863 -3.3069 40 1 -8.5457 -7.3572 -5.5968 41 1 -6.7667 -6.0798 -6.7249 42 1 -4.6458 -5.6360 -5.5608 43 1 -0.2649 -1.6146 -1.4043 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610791493.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:49 Heat of formation + Delta-G solvation = 15.978195 kcal Electronic energy + Delta-G solvation = -25523.226578 eV Core-core repulsion = 21918.426682 eV Total energy + Delta-G solvation = -3604.799896 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.50034 -39.41148 -37.83762 -35.86339 -34.27562 -33.68767 -32.32492 -30.58452 -30.10530 -28.91744 -28.39290 -26.00067 -25.31576 -22.71745 -22.03676 -21.74139 -21.03214 -20.25424 -19.41529 -17.65585 -17.10064 -16.39757 -15.71818 -15.42959 -15.32910 -15.14680 -14.92579 -14.67372 -14.22345 -13.97388 -13.55919 -13.36485 -13.17227 -13.01607 -12.73852 -12.64927 -12.59618 -12.26242 -11.87833 -11.55362 -11.42245 -11.23919 -11.21948 -10.95794 -10.93075 -10.78552 -10.71771 -10.29701 -10.13444 -9.70599 -9.40061 -9.34896 -8.92896 -8.61271 -7.95052 -7.73899 -7.04801 -6.75568 -4.63507 1.23678 1.26213 2.54182 2.77532 3.01988 3.07232 3.17702 3.47385 3.57892 3.70541 3.86375 4.31922 4.49547 4.68961 4.84406 4.86742 4.89895 5.01349 5.15157 5.19339 5.37671 5.41951 5.47201 5.50478 5.63950 5.70166 5.81178 5.87681 5.96080 6.00304 6.04225 6.20614 6.27429 6.37020 6.42681 6.56595 6.58533 6.63818 6.77977 6.87722 6.94686 7.10894 7.36174 7.45293 7.77985 7.94247 8.21482 8.42101 8.69307 8.75483 8.89696 9.65550 10.12366 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.022038 B = 0.002496 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.250698 B =11213.247027 C =12032.451667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.459 4.459 8 H 0.081 0.919 9 C 0.144 3.856 10 C -0.279 4.279 11 C 0.115 3.885 12 N -0.549 5.549 13 C 0.335 3.665 14 N -0.661 5.661 15 C 0.497 3.503 16 O -0.480 6.480 17 C -0.133 4.133 18 C -0.032 4.032 19 H 0.097 0.903 20 C -0.110 4.110 21 C -0.084 4.084 22 C -0.093 4.093 23 C -0.111 4.111 24 C -0.124 4.124 25 C -0.123 4.123 26 C -0.106 4.106 27 C -0.087 4.087 28 C -0.234 4.234 29 H 0.280 0.720 30 H 0.103 0.897 31 H 0.124 0.876 32 H 0.408 0.592 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.507 -7.470 -8.574 17.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.142 4.142 3 Si 0.739 3.261 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.491 4.491 8 H 0.099 0.901 9 C 0.135 3.865 10 C -0.303 4.303 11 C -0.039 4.039 12 N -0.268 5.268 13 C 0.110 3.890 14 N -0.306 5.306 15 C 0.282 3.718 16 O -0.350 6.350 17 C -0.173 4.173 18 C -0.050 4.050 19 H 0.115 0.885 20 C -0.148 4.148 21 C -0.121 4.121 22 C -0.093 4.093 23 C -0.129 4.129 24 C -0.142 4.142 25 C -0.141 4.141 26 C -0.124 4.124 27 C -0.087 4.087 28 C -0.259 4.259 29 H 0.091 0.909 30 H 0.121 0.879 31 H 0.141 0.859 32 H 0.242 0.758 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.135 0.865 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.879 -8.885 -8.331 18.465 hybrid contribution 0.498 2.208 -0.124 2.266 sum -13.381 -6.677 -8.454 17.179 Atomic orbital electron populations 1.69745 1.07497 1.29057 1.36361 1.25917 0.94895 1.01331 0.92075 0.86160 0.80789 0.80622 0.78551 1.18405 1.19753 1.19913 1.19575 0.95370 0.89814 1.44329 0.90053 1.17602 0.90272 0.92247 0.86332 1.21980 1.04463 0.94979 1.08836 1.21786 0.90763 0.96383 0.94972 1.67228 1.15567 1.28751 1.15262 1.18232 0.86864 0.90971 0.92929 1.43511 1.24958 1.09678 1.52498 1.20619 0.85033 0.83694 0.82432 1.90758 1.62274 1.35002 1.46966 1.21761 0.96513 0.98425 1.00620 1.20440 0.94647 0.96100 0.93831 0.88547 1.22363 0.96694 0.99705 0.96020 1.21118 0.98166 1.00270 0.92587 1.20674 0.93894 0.98023 0.96751 1.20622 0.96554 1.00782 0.94917 1.21010 0.99172 0.99033 0.94970 1.21018 0.93715 0.99540 0.99852 1.20670 0.97612 1.00295 0.93856 1.20650 0.95984 0.97789 0.94294 1.21602 1.01414 0.95449 1.07469 0.90926 0.87919 0.85855 0.75774 0.89021 0.89168 0.89263 0.91225 0.90203 0.90856 0.86453 0.86151 0.86058 0.86195 0.85463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.74 10.90 55.55 0.61 -19.14 16 2 C 0.08 1.82 5.32 -17.34 -0.09 1.72 16 3 Si 0.91 18.02 29.57 -169.99 -5.03 12.99 16 4 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 6 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.46 -11.78 9.12 -37.65 -0.34 -12.12 16 8 H 0.08 2.01 7.86 -52.49 -0.41 1.59 16 9 C 0.14 3.77 5.56 -106.55 -0.59 3.18 16 10 C -0.28 -6.81 9.90 -38.70 -0.38 -7.20 16 11 C 0.12 2.75 11.15 -17.68 -0.20 2.55 16 12 N -0.55 -13.82 7.85 -12.52 -0.10 -13.92 16 13 C 0.34 8.01 7.42 -154.70 -1.15 6.87 16 14 N -0.66 -12.63 5.39 -11.49 -0.06 -12.69 16 15 C 0.50 8.90 7.50 -10.99 -0.08 8.82 16 16 O -0.48 -10.36 13.18 5.57 0.07 -10.28 16 17 C -0.13 -1.69 4.99 -27.88 -0.14 -1.83 16 18 C -0.03 -0.40 2.49 -90.73 -0.23 -0.63 16 19 H 0.10 1.35 7.93 -51.93 -0.41 0.94 16 20 C -0.11 -1.39 5.69 -25.32 -0.14 -1.54 16 21 C -0.08 -0.89 6.77 -26.85 -0.18 -1.07 16 22 C -0.09 -1.05 6.14 -104.21 -0.64 -1.69 16 23 C -0.11 -1.09 10.04 -39.53 -0.40 -1.49 16 24 C -0.12 -1.13 10.05 -39.62 -0.40 -1.53 16 25 C -0.12 -1.15 10.04 -39.63 -0.40 -1.55 16 26 C -0.11 -1.11 9.73 -39.54 -0.38 -1.50 16 27 C -0.09 -1.01 5.61 -104.20 -0.58 -1.60 16 28 C -0.23 -5.89 8.57 -38.48 -0.33 -6.22 16 29 H 0.28 6.26 8.29 -40.82 -0.34 5.92 16 30 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 31 H 0.12 2.56 8.06 -52.48 -0.42 2.14 16 32 H 0.41 6.42 8.70 -40.82 -0.35 6.07 16 33 H 0.09 0.99 7.76 -51.93 -0.40 0.59 16 34 H 0.09 1.02 8.06 -51.93 -0.42 0.60 16 35 H 0.09 1.27 7.66 -51.93 -0.40 0.87 16 36 H 0.07 0.89 7.86 -51.93 -0.41 0.48 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 41 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 42 H 0.12 1.08 7.77 -52.49 -0.41 0.67 16 43 H 0.13 3.18 6.39 -52.48 -0.34 2.85 16 LS Contribution 359.13 15.07 5.41 5.41 Total: -1.00 -30.96 359.13 -11.40 -42.36 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -5.64 Total: 12.08 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -6.66 Total: -16.81 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.45 Total: -45.75 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.07 Total: -10.28 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.96 -11.40 -42.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610791493.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.341 kcal (2) G-P(sol) polarization free energy of solvation -30.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds