Wall clock time and date at job start Tue Mar 31 2020 13:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86796 * 119.99724 * 2 1 4 4 H 1.48501 * 109.47192 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47387 * 299.99522 * 3 2 1 6 6 H 1.48499 * 109.47642 * 59.99683 * 3 2 1 7 7 C 1.40029 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99672 * 187.53136 * 7 2 1 9 9 C 1.41538 * 119.99966 * 7.51866 * 7 2 1 10 10 C 1.41175 * 120.99499 * 210.65763 * 9 7 2 11 11 C 1.37588 * 119.01285 * 180.02562 * 10 9 7 12 12 N 1.32078 * 121.11263 * 359.97438 * 11 10 9 13 13 C 1.32472 * 122.23172 * 0.02562 * 12 11 10 14 14 N 1.39466 * 119.58107 * 179.97438 * 13 12 11 15 15 C 1.34779 * 120.00021 * 354.88943 * 14 13 12 16 16 O 1.21268 * 119.99863 * 4.13392 * 15 14 13 17 17 C 1.50699 * 119.99460 * 184.13718 * 15 14 13 18 18 C 1.53002 * 109.46879 * 185.96613 * 17 15 14 19 19 H 1.09003 * 110.27065 * 303.99355 * 18 17 15 20 20 C 1.54351 * 110.30275 * 66.06740 * 18 17 15 21 21 C 1.54339 * 102.39373 * 145.36404 * 20 18 17 22 22 C 1.51368 * 105.17201 * 333.65372 * 21 20 18 23 23 C 1.38490 * 130.38699 * 197.19539 * 22 21 20 24 24 C 1.38118 * 120.21378 * 180.02562 * 23 22 21 25 25 C 1.38246 * 119.92857 * 359.97438 * 24 23 22 26 26 C 1.38100 * 119.94405 * 0.02562 * 25 24 23 27 27 C 1.38221 * 109.75891 * 17.19451 * 22 21 20 28 28 C 1.38598 * 120.83641 * 0.27787 * 13 12 11 29 29 H 0.96999 * 119.99973 * 0.02562 * 1 2 3 30 30 H 1.07995 * 120.49756 * 359.97438 * 10 9 7 31 31 H 1.08008 * 119.44742 * 180.02562 * 11 10 9 32 32 H 0.97005 * 119.99898 * 174.87880 * 14 13 12 33 33 H 1.09006 * 109.47686 * 65.96929 * 17 15 14 34 34 H 1.08992 * 109.47518 * 305.96707 * 17 15 14 35 35 H 1.08999 * 110.82237 * 263.59151 * 20 18 17 36 36 H 1.09004 * 110.81954 * 27.13609 * 20 18 17 37 37 H 1.09005 * 110.30186 * 92.57705 * 21 20 18 38 38 H 1.09000 * 110.30294 * 214.72766 * 21 20 18 39 39 H 1.07998 * 119.89878 * 0.02562 * 23 22 21 40 40 H 1.07993 * 120.03295 * 179.97438 * 24 23 22 41 41 H 1.08004 * 120.02983 * 180.02562 * 25 24 23 42 42 H 1.07998 * 119.89740 * 180.02562 * 26 25 24 43 43 H 1.08003 * 120.60035 * 179.72254 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.7013 1.3465 0.0006 5 1 1.8827 2.3964 -1.2125 6 1 1.8826 2.3966 1.2124 7 6 2.0076 -1.2127 0.0005 8 1 3.0806 -1.2166 0.1231 9 6 1.3090 -2.4332 -0.1593 10 6 1.7780 -3.6230 0.4387 11 6 1.0671 -4.7867 0.2562 12 7 -0.0394 -4.8047 -0.4648 13 6 -0.5213 -3.7164 -1.0465 14 7 -1.6945 -3.7986 -1.7962 15 6 -2.2742 -4.9962 -2.0113 16 8 -1.8187 -5.9925 -1.4913 17 6 -3.4885 -5.0969 -2.8981 18 6 -4.0334 -6.5260 -2.8563 19 1 -3.2554 -7.2352 -3.1390 20 6 -4.5701 -6.8535 -1.4467 21 6 -5.7706 -7.7732 -1.7548 22 6 -6.2258 -7.3786 -3.1434 23 6 -7.4191 -7.6270 -3.8009 24 6 -7.6142 -7.1615 -5.0866 25 6 -6.6157 -6.4449 -5.7197 26 6 -5.4251 -6.1963 -5.0657 27 6 -5.2276 -6.6621 -3.7764 28 6 0.1289 -2.4985 -0.9247 29 1 -0.4850 0.8400 -0.0004 30 1 2.6817 -3.6199 1.0299 31 1 1.4193 -5.7010 0.7109 32 1 -2.0932 -2.9938 -2.1627 33 1 -3.2130 -4.8429 -3.9218 34 1 -4.2541 -4.4057 -2.5459 35 1 -3.8188 -7.3809 -0.8589 36 1 -4.8970 -5.9474 -0.9364 37 1 -5.4599 -8.8180 -1.7412 38 1 -6.5701 -7.6061 -1.0329 39 1 -8.1997 -8.1863 -3.3069 40 1 -8.5457 -7.3572 -5.5968 41 1 -6.7667 -6.0798 -6.7249 42 1 -4.6458 -5.6360 -5.5608 43 1 -0.2649 -1.6146 -1.4043 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610791493.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:48 Heat of formation + Delta-G solvation = 1.063559 kcal Electronic energy + Delta-G solvation = -25523.873326 eV Core-core repulsion = 21918.426682 eV Total energy + Delta-G solvation = -3605.446644 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.57426 -40.82172 -39.49245 -36.80341 -36.03286 -35.41764 -33.26033 -32.44743 -31.21695 -30.12517 -29.57941 -27.90074 -26.40556 -23.85729 -23.52319 -23.35319 -21.86442 -21.54315 -20.72912 -19.43994 -18.47373 -17.64282 -17.12163 -16.95878 -16.50076 -16.17076 -16.08210 -15.94838 -15.72580 -15.56979 -14.98438 -14.64737 -14.52575 -14.33505 -14.04203 -13.82014 -13.68739 -13.54523 -13.18059 -12.88228 -12.87869 -12.71429 -12.49352 -12.13609 -12.02207 -11.87118 -11.84632 -11.72663 -11.58478 -11.43282 -11.17583 -10.92101 -9.88939 -9.69284 -9.59380 -9.39309 -8.86600 -8.58233 -6.58067 0.47251 0.52011 0.73974 0.99021 1.41350 1.52790 1.55776 1.92109 2.17639 2.21450 2.83509 2.88777 3.43338 3.52660 3.71340 3.84161 3.88299 4.06506 4.20148 4.23987 4.26719 4.37179 4.47587 4.53803 4.61377 4.70435 4.75025 4.84669 4.88433 4.91714 4.93367 4.98845 5.08737 5.13466 5.16874 5.23721 5.30156 5.32773 5.46902 5.61124 5.65563 5.65963 5.79652 5.92988 6.14917 6.15903 6.49147 6.61641 6.78989 6.84887 7.34731 7.82615 8.32106 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.022038 B = 0.002496 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.250698 B =11213.247027 C =12032.451667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.036 3.964 3 Si 0.990 3.010 4 H -0.259 1.259 5 H -0.262 1.262 6 H -0.268 1.268 7 C -0.488 4.488 8 H 0.082 0.918 9 C 0.114 3.886 10 C -0.293 4.293 11 C 0.110 3.890 12 N -0.572 5.572 13 C 0.333 3.667 14 N -0.656 5.656 15 C 0.495 3.505 16 O -0.519 6.519 17 C -0.118 4.118 18 C -0.028 4.028 19 H 0.076 0.924 20 C -0.112 4.112 21 C -0.079 4.079 22 C -0.108 4.108 23 C -0.118 4.118 24 C -0.124 4.124 25 C -0.126 4.126 26 C -0.116 4.116 27 C -0.103 4.103 28 C -0.251 4.251 29 H 0.290 0.710 30 H 0.116 0.884 31 H 0.150 0.850 32 H 0.422 0.578 33 H 0.117 0.883 34 H 0.111 0.889 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.135 0.865 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.132 0.868 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.120 -6.579 -9.989 19.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.179 4.179 3 Si 0.810 3.190 4 H -0.183 1.183 5 H -0.186 1.186 6 H -0.192 1.192 7 C -0.520 4.520 8 H 0.100 0.900 9 C 0.106 3.894 10 C -0.317 4.317 11 C -0.044 4.044 12 N -0.292 5.292 13 C 0.107 3.893 14 N -0.303 5.303 15 C 0.283 3.717 16 O -0.391 6.391 17 C -0.157 4.157 18 C -0.047 4.047 19 H 0.094 0.906 20 C -0.150 4.150 21 C -0.116 4.116 22 C -0.108 4.108 23 C -0.136 4.136 24 C -0.141 4.141 25 C -0.144 4.144 26 C -0.133 4.133 27 C -0.103 4.103 28 C -0.277 4.277 29 H 0.101 0.899 30 H 0.134 0.866 31 H 0.168 0.832 32 H 0.260 0.740 33 H 0.135 0.865 34 H 0.129 0.871 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.153 0.847 40 H 0.164 0.836 41 H 0.163 0.837 42 H 0.150 0.850 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.524 -7.998 -9.765 20.008 hybrid contribution 0.933 1.870 0.299 2.111 sum -14.592 -6.128 -9.465 18.441 Atomic orbital electron populations 1.69786 1.08829 1.30638 1.35760 1.26785 0.95728 1.04434 0.90986 0.85037 0.79204 0.75791 0.78943 1.18260 1.18648 1.19237 1.19842 0.95636 0.90736 1.45747 0.89998 1.18043 0.91157 0.93262 0.86962 1.22160 1.05237 0.94877 1.09396 1.22242 0.90359 0.97295 0.94455 1.67366 1.16308 1.29328 1.16170 1.18487 0.87910 0.90345 0.92560 1.43592 1.23727 1.11149 1.51841 1.21546 0.85693 0.82471 0.82030 1.90739 1.63661 1.36179 1.48548 1.21746 0.94203 0.99193 1.00583 1.20323 0.94783 0.95377 0.94186 0.90589 1.22289 0.97047 0.99783 0.95831 1.21056 0.97534 0.99862 0.93103 1.20801 0.94589 0.98585 0.96854 1.20902 0.96425 1.00838 0.95429 1.21387 1.00108 0.97986 0.94662 1.21360 0.93163 0.99039 1.00848 1.20904 0.98589 1.00416 0.93438 1.20566 0.95480 0.99327 0.94956 1.21579 1.01962 0.95784 1.08353 0.89920 0.86600 0.83242 0.74025 0.86467 0.87067 0.91723 0.91586 0.89913 0.89600 0.84689 0.83581 0.83706 0.85032 0.85904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.71 10.90 21.84 0.24 -40.47 16 2 C 0.04 1.74 5.32 85.29 0.45 2.19 16 3 Si 0.99 36.35 29.57 68.60 2.03 38.38 16 4 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 5 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 6 H -0.27 -9.51 7.11 99.48 0.71 -8.80 16 7 C -0.49 -25.47 9.12 23.52 0.21 -25.25 16 8 H 0.08 4.11 7.86 -2.91 -0.02 4.08 16 9 C 0.11 6.13 5.56 -21.12 -0.12 6.01 16 10 C -0.29 -14.64 9.90 22.84 0.23 -14.41 16 11 C 0.11 5.35 11.15 84.50 0.94 6.29 16 12 N -0.57 -29.42 7.85 -193.53 -1.52 -30.93 16 13 C 0.33 16.28 7.42 132.75 0.98 17.27 16 14 N -0.66 -25.23 5.39 -308.67 -1.66 -26.89 16 15 C 0.50 17.82 7.50 87.66 0.66 18.48 16 16 O -0.52 -23.02 13.18 -2.99 -0.04 -23.06 16 17 C -0.12 -2.86 4.99 29.85 0.15 -2.72 16 18 C -0.03 -0.71 2.49 -10.87 -0.03 -0.73 16 19 H 0.08 2.20 7.93 -2.39 -0.02 2.18 16 20 C -0.11 -2.88 5.69 31.51 0.18 -2.71 16 21 C -0.08 -1.63 6.77 30.51 0.21 -1.42 16 22 C -0.11 -2.28 6.14 -19.60 -0.12 -2.40 16 23 C -0.12 -2.05 10.04 22.30 0.22 -1.83 16 24 C -0.12 -1.87 10.05 22.24 0.22 -1.64 16 25 C -0.13 -1.98 10.04 22.24 0.22 -1.76 16 26 C -0.12 -2.16 9.73 22.30 0.22 -1.94 16 27 C -0.10 -2.28 5.61 -19.59 -0.11 -2.39 16 28 C -0.25 -12.98 8.57 22.98 0.20 -12.78 16 29 H 0.29 12.82 8.29 -92.71 -0.77 12.05 16 30 H 0.12 5.29 8.06 -2.91 -0.02 5.27 16 31 H 0.15 6.23 8.06 -2.91 -0.02 6.20 16 32 H 0.42 13.19 8.70 -92.70 -0.81 12.38 16 33 H 0.12 2.29 7.76 -2.38 -0.02 2.28 16 34 H 0.11 2.30 8.06 -2.39 -0.02 2.28 16 35 H 0.06 1.96 7.66 -2.39 -0.02 1.94 16 36 H 0.07 1.70 7.86 -2.39 -0.02 1.69 16 37 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 40 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 41 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 42 H 0.13 2.05 7.77 -2.91 -0.02 2.03 16 43 H 0.12 6.31 6.39 -2.91 -0.02 6.29 16 Total: -1.00 -68.18 359.13 4.00 -64.18 By element: Atomic # 1 Polarization: 40.30 SS G_CDS: 0.23 Total: 40.53 kcal Atomic # 6 Polarization: -26.46 SS G_CDS: 4.72 Total: -21.74 kcal Atomic # 7 Polarization: -95.36 SS G_CDS: -2.94 Total: -98.30 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.04 Total: -23.06 kcal Atomic # 14 Polarization: 36.35 SS G_CDS: 2.03 Total: 38.38 kcal Total: -68.18 4.00 -64.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610791493.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.248 kcal (2) G-P(sol) polarization free energy of solvation -68.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds