Wall clock time and date at job start Tue Mar 31 2020 13:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00340 * 2 1 4 4 H 1.48501 * 109.46917 * 269.99993 * 3 2 1 5 5 H 1.48499 * 109.46741 * 29.99708 * 3 2 1 6 6 H 1.48498 * 109.47007 * 149.99636 * 3 2 1 7 7 C 1.37882 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00033 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99974 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47185 * 185.04390 * 9 7 2 11 11 C 1.46902 * 111.00279 * 199.54741 * 10 9 7 12 12 C 1.50702 * 109.47217 * 64.48085 * 11 10 9 13 13 C 1.34513 * 125.78589 * 89.99928 * 12 11 10 14 14 C 1.41378 * 106.83797 * 179.97438 * 13 12 11 15 15 C 1.34509 * 106.84305 * 0.02562 * 14 13 12 16 16 O 1.34295 * 125.79092 * 269.69867 * 12 11 10 17 17 C 1.46898 * 111.00200 * 75.58941 * 10 9 7 18 18 C 1.50703 * 109.47214 * 190.00377 * 17 10 9 19 19 N 1.31267 * 120.05957 * 90.00018 * 18 17 10 20 20 C 1.32573 * 122.77259 * 179.97438 * 19 18 17 21 21 C 1.36210 * 121.87816 * 0.02562 * 20 19 18 22 22 C 1.40651 * 118.66647 * 359.97438 * 21 20 19 23 23 C 1.40239 * 122.22862 * 179.97438 * 22 21 20 24 24 C 1.36216 * 119.47680 * 180.02562 * 23 22 21 25 25 C 1.39382 * 121.02533 * 0.02562 * 24 23 22 26 26 C 1.36165 * 121.08855 * 359.95756 * 25 24 23 27 27 C 1.40378 * 119.51748 * 0.04587 * 26 25 24 28 28 H 0.97002 * 119.99271 * 0.02562 * 1 2 3 29 29 H 1.08992 * 109.47293 * 65.04189 * 9 7 2 30 30 H 1.08999 * 109.47165 * 305.04006 * 9 7 2 31 31 H 1.08993 * 109.47030 * 184.48583 * 11 10 9 32 32 H 1.09007 * 109.46809 * 304.48676 * 11 10 9 33 33 H 1.08004 * 126.58095 * 0.04248 * 13 12 11 34 34 H 1.08002 * 126.57694 * 179.97438 * 14 13 12 35 35 H 1.08004 * 125.79016 * 180.02562 * 15 14 13 36 36 H 1.09003 * 109.47490 * 70.00552 * 17 10 9 37 37 H 1.08999 * 109.47453 * 310.00559 * 17 10 9 38 38 H 1.08001 * 119.05954 * 179.72379 * 20 19 18 39 39 H 1.08002 * 120.66672 * 180.02562 * 21 20 19 40 40 H 1.07998 * 120.26239 * 0.02562 * 23 22 21 41 41 H 1.07997 * 119.48160 * 180.02562 * 24 23 22 42 42 H 1.07995 * 119.45164 * 180.02562 * 25 24 23 43 43 H 1.08001 * 120.24012 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2008 -3.6131 0.1229 11 6 1.5954 -4.8732 -0.3284 12 6 1.2857 -4.7829 -1.8004 13 6 2.1151 -5.1285 -2.8014 14 6 1.4231 -4.8837 -4.0097 15 6 0.2125 -4.4026 -3.6749 16 8 0.1328 -4.3490 -2.3353 17 6 2.6986 -3.7316 1.4999 18 6 3.8420 -4.7125 1.5380 19 7 5.0737 -4.2938 1.3626 20 6 6.1190 -5.1089 1.3859 21 6 5.9825 -6.4479 1.5950 22 6 4.6921 -6.9721 1.7914 23 6 4.4655 -8.3383 2.0123 24 6 3.1919 -8.7855 2.1953 25 6 2.1107 -7.9064 2.1658 26 6 2.2935 -6.5737 1.9542 27 6 3.5918 -6.0758 1.7614 28 1 -0.4849 0.8401 -0.0004 29 1 0.6941 -2.5972 -0.9313 30 1 0.5580 -2.5186 0.8417 31 1 2.2911 -5.6937 -0.1531 32 1 0.6744 -5.0529 0.2263 33 1 3.1170 -5.5193 -2.7012 34 1 1.7955 -5.0502 -5.0097 35 1 -0.5655 -4.1133 -4.3660 36 1 1.8958 -4.0842 2.1475 37 1 3.0438 -2.7576 1.8466 38 1 7.1065 -4.7003 1.2300 39 1 6.8478 -7.0941 1.6106 40 1 5.2942 -9.0304 2.0371 41 1 3.0173 -9.8375 2.3658 42 1 1.1115 -8.2884 2.3144 43 1 1.4458 -5.9048 1.9345 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611251932.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:58 Heat of formation + Delta-G solvation = 85.173452 kcal Electronic energy + Delta-G solvation = -26872.362980 eV Core-core repulsion = 23270.563615 eV Total energy + Delta-G solvation = -3601.799365 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.02892 -40.90855 -37.38366 -36.89336 -33.23203 -32.60814 -32.26244 -31.14168 -30.49131 -29.48992 -27.33438 -26.28535 -24.08286 -23.62215 -23.35728 -21.65919 -21.14658 -20.56696 -19.53232 -17.75086 -17.58735 -16.76653 -16.44354 -16.22811 -15.59439 -15.06321 -14.80680 -14.56306 -14.50843 -14.31206 -13.78115 -13.64070 -13.43790 -13.29822 -12.75959 -12.39921 -12.31580 -12.19305 -12.08298 -11.84816 -11.75182 -11.48201 -11.27996 -11.09698 -10.94590 -10.59818 -10.51822 -10.04805 -9.87483 -9.42207 -9.23206 -9.13822 -9.02970 -8.37297 -8.02394 -7.94758 -7.38329 -5.96955 -3.97575 0.40436 0.95422 1.93767 2.26219 3.08491 3.13390 3.37571 3.43144 3.48814 3.53828 4.11466 4.43891 4.49461 4.54113 4.68562 4.81551 4.91106 5.05947 5.11476 5.15381 5.21806 5.34369 5.38559 5.44441 5.49443 5.61564 5.65700 5.75092 5.77299 5.84070 6.00572 6.01679 6.09273 6.25910 6.33757 6.36584 6.39760 6.49503 6.59102 6.71204 6.85466 6.98465 7.16065 7.26622 7.68721 7.83623 8.00904 8.12450 8.28807 8.50714 9.11433 9.66237 11.13400 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010508 B = 0.004797 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.893519 B = 5835.604586 C = 7299.088345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.896 3.104 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.503 4.503 8 H 0.067 0.933 9 C 0.190 3.810 10 N -0.518 5.518 11 C 0.122 3.878 12 C 0.019 3.981 13 C -0.204 4.204 14 C -0.218 4.218 15 C -0.045 4.045 16 O -0.169 6.169 17 C 0.105 3.895 18 C 0.198 3.802 19 N -0.468 5.468 20 C 0.089 3.911 21 C -0.176 4.176 22 C -0.021 4.021 23 C -0.118 4.118 24 C -0.099 4.099 25 C -0.128 4.128 26 C -0.084 4.084 27 C -0.110 4.110 28 H 0.260 0.740 29 H 0.039 0.961 30 H 0.000 1.000 31 H 0.093 0.907 32 H 0.041 0.959 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.196 0.804 36 H 0.045 0.955 37 H 0.112 0.888 38 H 0.150 0.850 39 H 0.133 0.867 40 H 0.127 0.873 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.518 -18.045 1.902 18.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.541 4.541 8 H 0.085 0.915 9 C 0.066 3.934 10 N -0.244 5.244 11 C -0.005 4.005 12 C -0.032 4.032 13 C -0.224 4.224 14 C -0.238 4.238 15 C -0.113 4.113 16 O -0.064 6.064 17 C -0.023 4.023 18 C 0.046 3.954 19 N -0.177 5.177 20 C -0.055 4.055 21 C -0.196 4.196 22 C -0.026 4.026 23 C -0.136 4.136 24 C -0.118 4.118 25 C -0.146 4.146 26 C -0.104 4.104 27 C -0.113 4.113 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.018 0.982 31 H 0.111 0.889 32 H 0.059 0.941 33 H 0.157 0.843 34 H 0.159 0.841 35 H 0.212 0.788 36 H 0.063 0.937 37 H 0.130 0.870 38 H 0.168 0.832 39 H 0.151 0.849 40 H 0.145 0.855 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.810 -16.836 1.630 17.885 hybrid contribution -0.150 -0.171 0.242 0.332 sum 5.660 -17.007 1.872 18.022 Atomic orbital electron populations 1.69971 1.06014 1.26652 1.51268 1.24966 0.94817 0.99205 0.95519 0.86520 0.79851 0.83116 0.78104 1.20757 1.21426 1.19673 1.21167 0.93804 0.89526 1.49646 0.91471 1.19902 0.89513 0.86979 0.97039 1.62192 1.39992 1.02867 1.19369 1.20829 0.97894 0.95207 0.86608 1.22191 0.84649 1.00477 0.95864 1.21376 1.00769 1.08716 0.91587 1.21696 0.95419 1.07413 0.99230 1.23874 1.00198 1.05425 0.81848 1.84086 1.36380 1.65513 1.20400 1.20970 0.91621 0.98884 0.90778 1.21886 0.93053 0.90661 0.89839 1.67357 0.98915 1.39615 1.11784 1.22263 0.97737 0.90069 0.95448 1.21815 0.96471 0.97117 1.04160 1.18146 0.93082 0.93744 0.97669 1.20914 0.97507 0.93933 1.01211 1.20944 0.92656 0.99819 0.98379 1.20891 0.99258 0.93431 1.00985 1.21259 0.96042 0.96133 0.96930 1.18949 0.94135 0.94653 1.03527 0.93041 0.94283 0.98217 0.88908 0.94128 0.84311 0.84122 0.78756 0.93680 0.87010 0.83244 0.84933 0.85464 0.85863 0.85660 0.84768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.50 -14.27 8.55 -34.44 -0.29 -14.56 16 8 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 9 C 0.19 4.92 4.62 -4.98 -0.02 4.90 16 10 N -0.52 -11.15 4.42 -238.97 -1.06 -12.21 16 11 C 0.12 2.26 4.07 -4.97 -0.02 2.24 16 12 C 0.02 0.37 5.87 -35.62 -0.21 0.16 16 13 C -0.20 -3.70 10.81 -39.70 -0.43 -4.13 16 14 C -0.22 -3.56 10.91 -39.71 -0.43 -3.99 16 15 C -0.05 -0.75 12.09 29.41 0.36 -0.40 16 16 O -0.17 -3.38 9.58 5.73 0.05 -3.33 16 17 C 0.11 2.02 4.90 -4.98 -0.02 2.00 16 18 C 0.20 3.43 5.87 -82.02 -0.48 2.95 16 19 N -0.47 -8.32 10.22 -9.39 -0.10 -8.42 16 20 C 0.09 1.25 11.07 -17.96 -0.20 1.05 16 21 C -0.18 -2.14 9.88 -39.40 -0.39 -2.52 16 22 C -0.02 -0.28 5.75 -106.81 -0.61 -0.89 16 23 C -0.12 -1.23 9.81 -39.56 -0.39 -1.62 16 24 C -0.10 -0.95 9.95 -39.88 -0.40 -1.35 16 25 C -0.13 -1.36 9.94 -39.90 -0.40 -1.75 16 26 C -0.08 -1.09 7.34 -39.52 -0.29 -1.38 16 27 C -0.11 -1.63 4.79 -106.86 -0.51 -2.14 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.04 1.10 5.97 -51.93 -0.31 0.79 16 30 H 0.00 0.00 8.00 -51.93 -0.42 -0.42 16 31 H 0.09 1.57 4.86 -51.93 -0.25 1.32 16 32 H 0.04 0.71 7.39 -51.93 -0.38 0.33 16 33 H 0.14 2.34 8.06 -52.48 -0.42 1.92 16 34 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 35 H 0.20 2.42 8.06 -52.48 -0.42 2.00 16 36 H 0.05 0.78 6.46 -51.93 -0.34 0.44 16 37 H 0.11 2.39 7.43 -51.93 -0.39 2.00 16 38 H 0.15 1.69 8.06 -52.49 -0.42 1.26 16 39 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.13 1.73 5.02 -52.49 -0.26 1.47 16 LS Contribution 355.75 15.07 5.36 5.36 Total: -1.00 -33.27 355.75 -10.14 -43.41 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -5.27 Total: 4.11 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -4.84 Total: -19.94 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.42 Total: -46.70 kcal Atomic # 8 Polarization: -3.38 SS G_CDS: 0.05 Total: -3.33 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.27 -10.14 -43.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611251932.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.580 kcal (2) G-P(sol) polarization free energy of solvation -33.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds