Wall clock time and date at job start Tue Mar 31 2020 13:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00340 * 2 1 4 4 H 1.48501 * 109.46917 * 269.99993 * 3 2 1 5 5 H 1.48499 * 109.46741 * 29.99708 * 3 2 1 6 6 H 1.48498 * 109.47007 * 149.99636 * 3 2 1 7 7 C 1.37882 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00033 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99974 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47185 * 185.04390 * 9 7 2 11 11 C 1.46902 * 111.00279 * 199.54741 * 10 9 7 12 12 C 1.50702 * 109.47217 * 64.48085 * 11 10 9 13 13 C 1.34513 * 125.78589 * 89.99928 * 12 11 10 14 14 C 1.41378 * 106.83797 * 179.97438 * 13 12 11 15 15 C 1.34509 * 106.84305 * 0.02562 * 14 13 12 16 16 O 1.34295 * 125.79092 * 269.69867 * 12 11 10 17 17 C 1.46898 * 111.00200 * 75.58941 * 10 9 7 18 18 C 1.50703 * 109.47214 * 190.00377 * 17 10 9 19 19 N 1.31267 * 120.05957 * 90.00018 * 18 17 10 20 20 C 1.32573 * 122.77259 * 179.97438 * 19 18 17 21 21 C 1.36210 * 121.87816 * 0.02562 * 20 19 18 22 22 C 1.40651 * 118.66647 * 359.97438 * 21 20 19 23 23 C 1.40239 * 122.22862 * 179.97438 * 22 21 20 24 24 C 1.36216 * 119.47680 * 180.02562 * 23 22 21 25 25 C 1.39382 * 121.02533 * 0.02562 * 24 23 22 26 26 C 1.36165 * 121.08855 * 359.95756 * 25 24 23 27 27 C 1.40378 * 119.51748 * 0.04587 * 26 25 24 28 28 H 0.97002 * 119.99271 * 0.02562 * 1 2 3 29 29 H 1.08992 * 109.47293 * 65.04189 * 9 7 2 30 30 H 1.08999 * 109.47165 * 305.04006 * 9 7 2 31 31 H 1.08993 * 109.47030 * 184.48583 * 11 10 9 32 32 H 1.09007 * 109.46809 * 304.48676 * 11 10 9 33 33 H 1.08004 * 126.58095 * 0.04248 * 13 12 11 34 34 H 1.08002 * 126.57694 * 179.97438 * 14 13 12 35 35 H 1.08004 * 125.79016 * 180.02562 * 15 14 13 36 36 H 1.09003 * 109.47490 * 70.00552 * 17 10 9 37 37 H 1.08999 * 109.47453 * 310.00559 * 17 10 9 38 38 H 1.08001 * 119.05954 * 179.72379 * 20 19 18 39 39 H 1.08002 * 120.66672 * 180.02562 * 21 20 19 40 40 H 1.07998 * 120.26239 * 0.02562 * 23 22 21 41 41 H 1.07997 * 119.48160 * 180.02562 * 24 23 22 42 42 H 1.07995 * 119.45164 * 180.02562 * 25 24 23 43 43 H 1.08001 * 120.24012 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2008 -3.6131 0.1229 11 6 1.5954 -4.8732 -0.3284 12 6 1.2857 -4.7829 -1.8004 13 6 2.1151 -5.1285 -2.8014 14 6 1.4231 -4.8837 -4.0097 15 6 0.2125 -4.4026 -3.6749 16 8 0.1328 -4.3490 -2.3353 17 6 2.6986 -3.7316 1.4999 18 6 3.8420 -4.7125 1.5380 19 7 5.0737 -4.2938 1.3626 20 6 6.1190 -5.1089 1.3859 21 6 5.9825 -6.4479 1.5950 22 6 4.6921 -6.9721 1.7914 23 6 4.4655 -8.3383 2.0123 24 6 3.1919 -8.7855 2.1953 25 6 2.1107 -7.9064 2.1658 26 6 2.2935 -6.5737 1.9542 27 6 3.5918 -6.0758 1.7614 28 1 -0.4849 0.8401 -0.0004 29 1 0.6941 -2.5972 -0.9313 30 1 0.5580 -2.5186 0.8417 31 1 2.2911 -5.6937 -0.1531 32 1 0.6744 -5.0529 0.2263 33 1 3.1170 -5.5193 -2.7012 34 1 1.7955 -5.0502 -5.0097 35 1 -0.5655 -4.1133 -4.3660 36 1 1.8958 -4.0842 2.1475 37 1 3.0438 -2.7576 1.8466 38 1 7.1065 -4.7003 1.2300 39 1 6.8478 -7.0941 1.6106 40 1 5.2942 -9.0304 2.0371 41 1 3.0173 -9.8375 2.3658 42 1 1.1115 -8.2884 2.3144 43 1 1.4458 -5.9048 1.9345 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611251932.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:57 Heat of formation + Delta-G solvation = 64.716985 kcal Electronic energy + Delta-G solvation = -26873.250039 eV Core-core repulsion = 23270.563615 eV Total energy + Delta-G solvation = -3602.686424 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.43408 -41.95288 -38.66105 -38.17592 -34.95364 -34.06525 -33.77837 -32.14279 -31.81853 -30.68189 -29.17696 -27.67594 -25.79542 -24.65609 -24.39960 -23.26062 -22.53584 -21.85487 -20.98540 -18.76091 -18.72904 -18.46592 -18.05905 -17.38395 -17.02406 -16.80665 -16.08668 -15.92176 -15.75026 -15.69814 -15.00350 -14.78061 -14.68794 -14.57422 -14.20197 -13.88155 -13.68288 -13.57886 -13.45420 -13.20204 -13.02769 -12.95131 -12.74631 -12.59826 -12.56311 -12.43226 -12.00436 -11.85981 -11.39468 -11.01231 -10.77542 -10.58939 -10.29993 -10.00274 -9.40242 -9.11700 -8.93623 -8.18798 -6.27934 -0.58139 -0.00226 0.82292 0.99108 1.38769 1.40005 1.52177 1.75654 2.13485 2.22649 2.40656 3.01633 3.12936 3.27247 3.47823 3.61872 3.75176 3.79839 3.89123 4.03566 4.11401 4.17244 4.25453 4.32347 4.34958 4.40727 4.47084 4.52231 4.54228 4.79023 4.87008 4.92706 4.94040 5.04213 5.08212 5.12424 5.19169 5.22064 5.25231 5.50337 5.51171 5.64731 5.68824 5.74253 5.96441 6.03974 6.18058 6.31683 6.47910 6.86271 7.17531 7.40432 8.91250 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010508 B = 0.004797 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.893519 B = 5835.604586 C = 7299.088345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.963 3.037 4 H -0.275 1.275 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.210 3.790 10 N -0.527 5.527 11 C 0.132 3.868 12 C -0.017 4.017 13 C -0.207 4.207 14 C -0.220 4.220 15 C -0.051 4.051 16 O -0.198 6.198 17 C 0.113 3.887 18 C 0.169 3.831 19 N -0.506 5.506 20 C 0.058 3.942 21 C -0.148 4.148 22 C -0.043 4.043 23 C -0.109 4.109 24 C -0.097 4.097 25 C -0.112 4.112 26 C -0.115 4.115 27 C -0.117 4.117 28 H 0.264 0.736 29 H 0.014 0.986 30 H -0.027 1.027 31 H 0.110 0.890 32 H 0.042 0.958 33 H 0.148 0.852 34 H 0.174 0.826 35 H 0.232 0.768 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.171 0.829 39 H 0.175 0.825 40 H 0.163 0.837 41 H 0.162 0.838 42 H 0.150 0.850 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.075 -20.908 1.474 22.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.191 4.191 3 Si 0.788 3.212 4 H -0.201 1.201 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.557 4.557 8 H 0.073 0.927 9 C 0.085 3.915 10 N -0.253 5.253 11 C 0.005 3.995 12 C -0.067 4.067 13 C -0.227 4.227 14 C -0.239 4.239 15 C -0.118 4.118 16 O -0.094 6.094 17 C -0.014 4.014 18 C 0.017 3.983 19 N -0.216 5.216 20 C -0.085 4.085 21 C -0.168 4.168 22 C -0.048 4.048 23 C -0.127 4.127 24 C -0.116 4.116 25 C -0.130 4.130 26 C -0.135 4.135 27 C -0.119 4.119 28 H 0.073 0.927 29 H 0.032 0.968 30 H -0.009 1.009 31 H 0.128 0.872 32 H 0.060 0.940 33 H 0.166 0.834 34 H 0.192 0.808 35 H 0.249 0.751 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.188 0.812 39 H 0.192 0.808 40 H 0.181 0.819 41 H 0.179 0.821 42 H 0.167 0.833 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.378 -19.719 1.207 21.088 hybrid contribution -0.618 0.533 0.377 0.899 sum 6.760 -19.186 1.584 20.403 Atomic orbital electron populations 1.70084 1.07434 1.27722 1.51875 1.25799 0.95692 1.02722 0.94897 0.85479 0.78626 0.78757 0.78358 1.20067 1.20298 1.19298 1.21382 0.93323 0.91114 1.49846 0.92747 1.19446 0.89396 0.88188 0.94512 1.62036 1.38855 1.03222 1.21142 1.20797 0.98139 0.93997 0.86555 1.22437 0.85349 1.02397 0.96500 1.21679 1.00969 1.07920 0.92180 1.22093 0.94981 1.06739 1.00070 1.24754 1.01580 1.04457 0.81002 1.84061 1.36953 1.66193 1.22236 1.20751 0.93028 0.98107 0.89555 1.21409 0.92205 0.91430 0.93243 1.67178 0.99902 1.41860 1.12612 1.22635 0.97546 0.91122 0.97213 1.22250 0.97517 0.96625 1.00390 1.18520 0.92850 0.95000 0.98402 1.21330 0.99126 0.92873 0.99373 1.21398 0.91859 1.01464 0.96847 1.21283 1.01148 0.92410 0.98117 1.21231 0.95149 0.97382 0.99736 1.18967 0.95641 0.93649 1.03691 0.92723 0.96786 1.00917 0.87177 0.93986 0.83413 0.80808 0.75129 0.92853 0.90571 0.81206 0.80789 0.81906 0.82054 0.83254 0.86047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.44 13.29 21.45 0.28 -57.15 16 2 C 0.01 0.42 5.46 84.66 0.46 0.88 16 3 Si 0.96 46.60 29.54 68.60 2.03 48.62 16 4 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 7 C -0.52 -31.08 8.55 25.60 0.22 -30.86 16 8 H 0.05 3.33 7.81 -2.91 -0.02 3.31 16 9 C 0.21 11.71 4.62 85.56 0.40 12.11 16 10 N -0.53 -24.37 4.42 -909.95 -4.02 -28.39 16 11 C 0.13 5.18 4.07 85.56 0.35 5.52 16 12 C -0.02 -0.68 5.87 24.83 0.15 -0.53 16 13 C -0.21 -7.52 10.81 22.19 0.24 -7.28 16 14 C -0.22 -6.89 10.91 22.19 0.24 -6.65 16 15 C -0.05 -1.66 12.09 66.97 0.81 -0.85 16 16 O -0.20 -8.21 9.58 -2.41 -0.02 -8.24 16 17 C 0.11 4.76 4.90 85.56 0.42 5.17 16 18 C 0.17 6.17 5.87 43.17 0.25 6.42 16 19 N -0.51 -18.81 10.22 -183.62 -1.88 -20.69 16 20 C 0.06 1.61 11.07 84.11 0.93 2.54 16 21 C -0.15 -3.23 9.88 22.39 0.22 -3.01 16 22 C -0.04 -1.02 5.75 -21.28 -0.12 -1.14 16 23 C -0.11 -1.80 9.81 22.29 0.22 -1.58 16 24 C -0.10 -1.44 9.95 22.07 0.22 -1.22 16 25 C -0.11 -2.09 9.94 22.06 0.22 -1.87 16 26 C -0.12 -2.98 7.34 22.31 0.16 -2.82 16 27 C -0.12 -3.47 4.79 -21.31 -0.10 -3.57 16 28 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 29 H 0.01 0.85 5.97 -2.39 -0.01 0.84 16 30 H -0.03 -1.60 8.00 -2.39 -0.02 -1.62 16 31 H 0.11 3.88 4.86 -2.39 -0.01 3.87 16 32 H 0.04 1.59 7.39 -2.38 -0.02 1.58 16 33 H 0.15 4.94 8.06 -2.91 -0.02 4.92 16 34 H 0.17 4.13 8.06 -2.91 -0.02 4.11 16 35 H 0.23 5.36 8.06 -2.91 -0.02 5.33 16 36 H 0.05 2.06 6.46 -2.39 -0.02 2.04 16 37 H 0.08 3.63 7.43 -2.39 -0.02 3.61 16 38 H 0.17 3.71 8.06 -2.91 -0.02 3.68 16 39 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 40 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 41 H 0.16 1.23 8.06 -2.91 -0.02 1.20 16 42 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 43 H 0.12 3.34 5.02 -2.91 -0.01 3.33 16 Total: -1.00 -77.32 355.75 2.70 -74.62 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 1.03 Total: 19.97 kcal Atomic # 6 Polarization: -34.02 SS G_CDS: 5.28 Total: -28.73 kcal Atomic # 7 Polarization: -100.62 SS G_CDS: -5.61 Total: -106.24 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -0.02 Total: -8.24 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.62 kcal Total: -77.32 2.70 -74.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611251932.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.334 kcal (2) G-P(sol) polarization free energy of solvation -77.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds