Wall clock time and date at job start Tue Mar 31 2020 13:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86795 * 119.99925 * 2 1 4 4 H 1.48502 * 109.47411 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46959 * 299.99596 * 3 2 1 6 6 H 1.48503 * 109.47211 * 59.99326 * 3 2 1 7 7 C 1.39895 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00287 * 195.09307 * 7 2 1 9 9 C 1.41159 * 119.99909 * 15.09347 * 7 2 1 10 10 C 1.40865 * 120.16471 * 208.89353 * 9 7 2 11 11 C 1.36374 * 119.83121 * 180.02562 * 10 9 7 12 12 C 1.39486 * 120.16675 * 0.02562 * 11 10 9 13 13 N 1.39227 * 119.83477 * 179.97438 * 12 11 10 14 14 C 1.34771 * 119.99878 * 143.77337 * 13 12 11 15 15 O 1.21587 * 120.00224 * 4.23733 * 14 13 12 16 16 N 1.34775 * 119.99992 * 184.22770 * 14 13 12 17 17 C 1.39924 * 120.00188 * 184.67328 * 16 14 13 18 18 C 1.38876 * 120.07314 * 323.31046 * 17 16 14 19 19 C 1.38109 * 119.93424 * 179.76915 * 18 17 16 20 20 C 1.38285 * 120.06715 * 0.50499 * 19 18 17 21 21 C 1.50702 * 119.92910 * 179.76288 * 20 19 18 22 22 C 1.52995 * 117.49827 * 8.73595 * 21 20 19 23 23 C 1.52997 * 117.50083 * 300.07268 * 21 20 19 24 24 C 1.38279 * 120.13954 * 359.75244 * 20 19 18 25 25 C 1.38109 * 120.07596 * 359.97438 * 24 20 19 26 26 C 1.39487 * 120.33073 * 0.24901 * 12 11 10 27 27 C 1.36378 * 120.16893 * 359.45035 * 26 12 11 28 28 H 0.97000 * 120.00023 * 0.02562 * 1 2 3 29 29 H 1.08004 * 120.08526 * 359.97438 * 10 9 7 30 30 H 1.07992 * 119.91474 * 180.02562 * 11 10 9 31 31 H 0.96999 * 119.99456 * 323.50372 * 13 12 11 32 32 H 0.97002 * 119.99634 * 4.67439 * 16 14 13 33 33 H 1.08005 * 120.02706 * 359.97438 * 18 17 16 34 34 H 1.08000 * 119.96907 * 180.23128 * 19 18 17 35 35 H 1.08998 * 115.54648 * 154.39609 * 21 20 19 36 36 H 1.09000 * 117.50051 * 359.97438 * 22 21 20 37 37 H 1.08997 * 117.50117 * 145.01361 * 22 21 20 38 38 H 1.09001 * 117.49450 * 214.97877 * 23 21 20 39 39 H 1.08992 * 117.50065 * 359.97019 * 23 21 20 40 40 H 1.08004 * 119.96765 * 180.02562 * 24 20 19 41 41 H 1.08000 * 120.04095 * 180.02562 * 25 24 20 42 42 H 1.07999 * 119.91564 * 179.70355 * 26 12 11 43 43 H 1.07996 * 120.08376 * 180.27217 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3464 0.0006 5 1 1.8841 2.3963 -1.2126 6 1 1.8839 2.3965 1.2124 7 6 2.0083 -1.2115 0.0005 8 1 3.0604 -1.2275 0.2441 9 6 1.3391 -2.4130 -0.3172 10 6 1.7783 -3.6342 0.2307 11 6 1.1270 -4.7910 -0.0814 12 6 0.0289 -4.7672 -0.9411 13 7 -0.6306 -5.9524 -1.2554 14 6 -1.9688 -5.9570 -1.4153 15 8 -2.5911 -4.9138 -1.3614 16 7 -2.6172 -7.1178 -1.6351 17 6 -3.9915 -7.1127 -1.8983 18 6 -4.8209 -6.2073 -1.2494 19 6 -6.1762 -6.2016 -1.5148 20 6 -6.7092 -7.1030 -2.4179 21 6 -8.1893 -7.0975 -2.7012 22 6 -9.0153 -5.9478 -2.1210 23 6 -9.1346 -7.3530 -1.5256 24 6 -5.8868 -8.0093 -3.0617 25 6 -4.5298 -8.0165 -2.8049 26 6 -0.4084 -3.5626 -1.4921 27 6 0.2291 -2.3969 -1.1845 28 1 -0.4850 0.8400 -0.0004 29 1 2.6292 -3.6543 0.8955 30 1 1.4623 -5.7279 0.3382 31 1 -0.1264 -6.7740 -1.3632 32 1 -2.1311 -7.9570 -1.6109 33 1 -4.4058 -5.5063 -0.5403 34 1 -6.8212 -5.4952 -1.0133 35 1 -8.4826 -7.4857 -3.6766 36 1 -8.4883 -5.1956 -1.5340 37 1 -9.8524 -5.5800 -2.7144 38 1 -10.0500 -7.9091 -1.7277 39 1 -8.6860 -7.5256 -0.5474 40 1 -6.3060 -8.7119 -3.7669 41 1 -3.8880 -8.7243 -3.3083 42 1 -1.2564 -3.5526 -2.1608 43 1 -0.1133 -1.4645 -1.6084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611316460.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:11 Heat of formation + Delta-G solvation = 32.635572 kcal Electronic energy + Delta-G solvation = -25131.211898 eV Core-core repulsion = 21527.134319 eV Total energy + Delta-G solvation = -3604.077578 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.89714 -40.45421 -39.27721 -37.77676 -36.21069 -35.50352 -34.65578 -31.88023 -31.45239 -31.11612 -29.95782 -26.85804 -24.73372 -24.16702 -23.26717 -23.11583 -22.78824 -21.58310 -21.21255 -19.52248 -19.24534 -18.93971 -17.68941 -17.17716 -17.07260 -16.41716 -16.13559 -15.78019 -15.72695 -15.41046 -15.00320 -14.88816 -14.52790 -14.25849 -13.99426 -13.97313 -13.73470 -13.65828 -13.37611 -12.84109 -12.68292 -12.53520 -12.35286 -12.25609 -12.08534 -11.94342 -11.75947 -11.67997 -11.29259 -11.22507 -11.07298 -10.77038 -10.51421 -9.86121 -9.45677 -9.01560 -8.77401 -8.59061 -6.28312 0.27939 0.47596 0.83964 1.13596 1.37953 1.44457 1.54175 1.64638 2.07104 2.21740 2.69240 2.78526 3.18545 3.26453 3.68354 3.72317 3.92316 4.03996 4.07943 4.17735 4.33424 4.42783 4.45035 4.47052 4.61443 4.71062 4.80571 4.94583 4.98072 5.06324 5.11398 5.15443 5.17452 5.27175 5.28732 5.36589 5.38402 5.42646 5.57491 5.67254 5.71562 5.78935 6.06313 6.10215 6.11391 6.15419 6.35486 6.68488 6.93525 7.00890 7.05333 7.55716 8.36848 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.018440 B = 0.002437 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.033267 B =11488.646083 C =12731.233697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.028 3.972 3 Si 0.985 3.015 4 H -0.252 1.252 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.496 4.496 8 H 0.082 0.918 9 C 0.074 3.926 10 C -0.218 4.218 11 C -0.098 4.098 12 C 0.026 3.974 13 N -0.649 5.649 14 C 0.689 3.311 15 O -0.606 6.606 16 N -0.669 5.669 17 C 0.144 3.856 18 C -0.141 4.141 19 C -0.115 4.115 20 C -0.075 4.075 21 C -0.120 4.120 22 C -0.187 4.187 23 C -0.162 4.162 24 C -0.094 4.094 25 C -0.136 4.136 26 C -0.099 4.099 27 C -0.176 4.176 28 H 0.285 0.715 29 H 0.113 0.887 30 H 0.137 0.863 31 H 0.418 0.582 32 H 0.425 0.575 33 H 0.104 0.896 34 H 0.124 0.876 35 H 0.131 0.869 36 H 0.086 0.914 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.087 0.913 40 H 0.158 0.842 41 H 0.157 0.843 42 H 0.093 0.907 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.247 -18.305 -5.542 22.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.186 4.186 3 Si 0.806 3.194 4 H -0.175 1.175 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.526 4.526 8 H 0.101 0.899 9 C 0.072 3.928 10 C -0.238 4.238 11 C -0.118 4.118 12 C -0.068 4.068 13 N -0.297 5.297 14 C 0.390 3.610 15 O -0.484 6.484 16 N -0.319 5.319 17 C 0.050 3.950 18 C -0.162 4.162 19 C -0.133 4.133 20 C -0.076 4.076 21 C -0.138 4.138 22 C -0.224 4.224 23 C -0.199 4.199 24 C -0.112 4.112 25 C -0.156 4.156 26 C -0.119 4.119 27 C -0.196 4.196 28 H 0.095 0.905 29 H 0.131 0.869 30 H 0.155 0.845 31 H 0.255 0.745 32 H 0.264 0.736 33 H 0.122 0.878 34 H 0.141 0.859 35 H 0.149 0.851 36 H 0.105 0.895 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.106 0.894 40 H 0.176 0.824 41 H 0.174 0.826 42 H 0.111 0.889 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.932 -17.253 -5.464 22.243 hybrid contribution 0.743 0.644 0.256 1.016 sum -12.189 -16.609 -5.207 21.250 Atomic orbital electron populations 1.69951 1.09225 1.30304 1.36675 1.26851 0.95458 1.04861 0.91407 0.85116 0.79556 0.76050 0.78689 1.17546 1.19296 1.19245 1.19819 0.97529 0.91952 1.43269 0.89943 1.18021 0.91685 0.93731 0.89398 1.20864 1.04600 0.92653 1.05707 1.20413 0.96135 0.98457 0.96781 1.16994 0.99177 0.85034 1.05583 1.41763 1.04321 1.10971 1.72682 1.16211 0.82337 0.84063 0.78358 1.90943 1.67008 1.32501 1.57980 1.42300 1.07188 1.08100 1.74341 1.17721 0.81792 0.98752 0.96775 1.21222 0.93926 1.00166 1.00854 1.21014 0.93942 0.99281 0.99088 1.19378 0.94850 0.96094 0.97254 1.21095 0.88137 1.05014 0.99571 1.23160 1.02804 0.91980 1.04432 1.23087 1.01025 0.98891 0.96904 1.21075 0.92133 0.98391 0.99596 1.21166 0.96529 1.00827 0.97069 1.20557 0.98664 0.92831 0.99868 1.20816 1.00522 0.96184 1.02048 0.90464 0.86928 0.84519 0.74459 0.73648 0.87832 0.85856 0.85138 0.89531 0.87048 0.86566 0.89423 0.82433 0.82561 0.88925 0.89145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.97 11.09 21.82 0.24 -46.73 16 2 C 0.03 1.47 5.16 85.24 0.44 1.91 16 3 Si 0.99 39.77 29.58 68.60 2.03 41.80 16 4 H -0.25 -9.70 7.11 99.48 0.71 -9.00 16 5 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 6 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 7 C -0.50 -27.33 9.03 23.39 0.21 -27.12 16 8 H 0.08 4.29 7.89 -2.91 -0.02 4.26 16 9 C 0.07 4.13 5.53 -21.27 -0.12 4.01 16 10 C -0.22 -10.49 9.74 22.48 0.22 -10.27 16 11 C -0.10 -4.08 9.90 22.14 0.22 -3.86 16 12 C 0.03 1.14 6.28 38.57 0.24 1.38 16 13 N -0.65 -21.71 5.31 -316.79 -1.68 -23.39 16 14 C 0.69 24.85 8.22 179.06 1.47 26.33 16 15 O -0.61 -28.54 11.38 -3.99 -0.05 -28.59 16 16 N -0.67 -17.14 5.34 -317.19 -1.69 -18.84 16 17 C 0.14 3.90 6.27 38.15 0.24 4.14 16 18 C -0.14 -4.53 8.69 22.39 0.19 -4.33 16 19 C -0.11 -3.07 9.29 22.25 0.21 -2.86 16 20 C -0.07 -1.58 5.61 -19.84 -0.11 -1.69 16 21 C -0.12 -1.91 6.04 -11.54 -0.07 -1.98 16 22 C -0.19 -2.94 9.86 30.62 0.30 -2.64 16 23 C -0.16 -2.25 10.17 30.62 0.31 -1.94 16 24 C -0.09 -1.68 9.73 22.25 0.22 -1.46 16 25 C -0.14 -2.65 9.97 22.39 0.22 -2.42 16 26 C -0.10 -5.17 8.60 22.14 0.19 -4.98 16 27 C -0.18 -10.01 8.60 22.48 0.19 -9.82 16 28 H 0.28 14.61 8.30 -92.71 -0.77 13.84 16 29 H 0.11 4.95 8.06 -2.91 -0.02 4.92 16 30 H 0.14 4.42 8.06 -2.91 -0.02 4.39 16 31 H 0.42 9.63 8.84 -92.71 -0.82 8.81 16 32 H 0.42 6.83 8.85 -92.71 -0.82 6.01 16 33 H 0.10 4.08 6.35 -2.91 -0.02 4.06 16 34 H 0.12 3.12 6.01 -2.91 -0.02 3.11 16 35 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.09 1.59 6.17 -2.39 -0.01 1.57 16 37 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.16 1.74 8.06 -2.91 -0.02 1.71 16 41 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 42 H 0.09 5.03 6.32 -2.91 -0.02 5.01 16 43 H 0.09 5.50 6.39 -2.91 -0.02 5.48 16 Total: -1.00 -74.17 360.61 2.86 -71.31 By element: Atomic # 1 Polarization: 42.63 SS G_CDS: -0.57 Total: 42.06 kcal Atomic # 6 Polarization: -42.20 SS G_CDS: 4.58 Total: -37.62 kcal Atomic # 7 Polarization: -85.82 SS G_CDS: -3.13 Total: -88.96 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -0.05 Total: -28.59 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Total: -74.17 2.86 -71.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611316460.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.943 kcal (2) G-P(sol) polarization free energy of solvation -74.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds