Wall clock time and date at job start Tue Mar 31 2020 13:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86795 * 120.00260 * 2 1 4 4 H 1.48498 * 109.47181 * 269.99705 * 3 2 1 5 5 H 1.48498 * 109.47260 * 30.00086 * 3 2 1 6 6 H 1.48502 * 109.47130 * 149.99905 * 3 2 1 7 7 C 1.38659 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99848 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00122 * 180.02562 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94542 * 9 7 2 11 11 C 1.38880 * 120.06526 * 185.25998 * 10 9 7 12 12 C 1.38105 * 119.92781 * 179.76650 * 11 10 9 13 13 C 1.38304 * 120.06646 * 0.48744 * 12 11 10 14 14 C 1.50707 * 119.92974 * 179.74714 * 13 12 11 15 15 N 1.46901 * 109.46748 * 270.01956 * 14 13 12 16 16 C 1.46900 * 110.99887 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.47313 * 180.02562 * 16 15 14 18 18 C 1.37787 * 120.11065 * 259.72714 * 17 16 15 19 19 C 1.38784 * 120.66750 * 179.76720 * 18 17 16 20 20 C 1.36666 * 120.52659 * 0.51049 * 19 18 17 21 21 C 1.39586 * 119.76272 * 359.74311 * 20 19 18 22 22 C 1.46488 * 134.03108 * 179.97438 * 21 20 19 23 23 C 1.34238 * 106.99767 * 180.02562 * 22 21 20 24 24 N 1.36831 * 109.93978 * 0.02562 * 23 22 21 25 25 H 0.96995 * 125.06776 * 179.97438 * 24 23 22 26 26 C 1.37692 * 109.87348 * 359.97438 * 24 23 22 27 27 C 1.38302 * 120.13995 * 359.76849 * 13 12 11 28 28 C 1.38101 * 120.06877 * 359.97438 * 27 13 12 29 29 H 0.96997 * 119.99350 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.04097 * 0.02562 * 11 10 9 31 31 H 1.07996 * 119.96589 * 180.23432 * 12 11 10 32 32 H 1.09002 * 109.47040 * 30.01809 * 14 13 12 33 33 H 1.08995 * 109.46954 * 150.02268 * 14 13 12 34 34 H 1.00902 * 111.00515 * 303.95489 * 15 14 13 35 35 H 1.09001 * 109.47160 * 300.00416 * 16 15 14 36 36 H 1.09001 * 109.47222 * 60.00052 * 16 15 14 37 37 H 1.08009 * 119.66554 * 0.02562 * 18 17 16 38 38 H 1.08001 * 119.73808 * 180.23465 * 19 18 17 39 39 H 1.08002 * 120.11565 * 179.76880 * 20 19 18 40 40 H 1.07999 * 126.50161 * 0.02793 * 22 21 20 41 41 H 1.08003 * 125.02944 * 179.97438 * 23 22 21 42 42 H 1.07999 * 119.96521 * 179.97438 * 27 13 12 43 43 H 1.07997 * 120.03156 * 179.97438 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0005 9 8 3.3571 -1.2010 0.0011 10 6 3.9733 -2.4058 0.1081 11 6 5.3555 -2.4724 0.2252 12 6 5.9791 -3.6994 0.3388 13 6 5.2293 -4.8615 0.3260 14 6 5.9134 -6.1991 0.4444 15 7 6.2548 -6.6948 -0.8957 16 6 6.9253 -7.9996 -0.8193 17 6 7.2599 -8.4747 -2.2097 18 6 6.4597 -9.4074 -2.8328 19 6 6.7543 -9.8494 -4.1150 20 6 7.8506 -9.3740 -4.7783 21 6 8.6779 -8.4325 -4.1640 22 6 9.8979 -7.7303 -4.5696 23 6 10.2497 -6.9331 -3.5485 24 7 9.3553 -7.0676 -2.5218 25 1 9.4008 -6.5928 -1.6772 26 6 8.3808 -7.9775 -2.8661 27 6 3.8530 -4.7987 0.2042 28 6 3.2232 -3.5745 0.0955 29 1 -0.4849 0.8401 0.0004 30 1 5.9419 -1.5655 0.2316 31 1 7.0536 -3.7518 0.4337 32 1 6.8234 -6.0908 1.0345 33 1 5.2448 -6.9070 0.9342 34 1 5.4358 -6.7426 -1.4831 35 1 7.8424 -7.9034 -0.2380 36 1 6.2641 -8.7203 -0.3380 37 1 5.5920 -9.7954 -2.3198 38 1 6.1147 -10.5781 -4.5906 39 1 8.0757 -9.7253 -5.7745 40 1 10.4159 -7.8342 -5.5115 41 1 11.1117 -6.2825 -3.5385 42 1 3.2703 -5.7079 0.1941 43 1 2.1485 -3.5262 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729685567.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:05 Heat of formation + Delta-G solvation = 56.736698 kcal Electronic energy + Delta-G solvation = -24948.395446 eV Core-core repulsion = 21345.362971 eV Total energy + Delta-G solvation = -3603.032475 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.35369 -39.25763 -37.64227 -36.99390 -35.51112 -32.61974 -32.23622 -30.32216 -30.18087 -29.25083 -28.82684 -26.19086 -25.03376 -23.46625 -22.11586 -21.99063 -21.87563 -20.51279 -20.29910 -18.09532 -17.87877 -17.31200 -16.35542 -15.73210 -15.52075 -15.08954 -14.91278 -14.75050 -14.33775 -14.22600 -13.94413 -13.79933 -13.70517 -13.33682 -13.23582 -12.78680 -12.67967 -12.54408 -12.44443 -12.18319 -11.82759 -11.74118 -11.56099 -11.33427 -11.02901 -10.80968 -10.68056 -10.65454 -10.17002 -9.76931 -9.41070 -8.89602 -8.49599 -8.31318 -8.27486 -7.80866 -7.34429 -6.43875 -4.10591 0.96061 1.55762 2.11043 2.15314 2.59009 3.07627 3.21168 3.24012 3.38482 3.74113 4.21810 4.25156 4.54113 4.62791 4.64917 4.82555 4.83858 4.96449 5.06882 5.10455 5.15878 5.24537 5.33194 5.38222 5.44692 5.51627 5.64439 5.70980 5.71828 5.77227 5.88278 5.92767 6.10121 6.31248 6.37973 6.47171 6.54504 6.59333 6.63884 6.75995 6.89880 7.03904 7.07955 7.21152 7.25654 7.37811 7.42703 7.59094 7.77627 8.01587 8.91320 9.53628 10.63754 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.018666 B = 0.002291 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.654171 B =12217.429830 C =12521.523352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.390 4.390 8 H 0.106 0.894 9 O -0.217 6.217 10 C 0.162 3.838 11 C -0.194 4.194 12 C -0.054 4.054 13 C -0.177 4.177 14 C 0.116 3.884 15 N -0.682 5.682 16 C 0.098 3.902 17 C -0.091 4.091 18 C -0.097 4.097 19 C -0.147 4.147 20 C -0.073 4.073 21 C -0.115 4.115 22 C -0.211 4.211 23 C 0.052 3.948 24 N -0.586 5.586 25 H 0.418 0.582 26 C 0.122 3.878 27 C -0.066 4.066 28 C -0.221 4.221 29 H 0.280 0.720 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.069 0.931 33 H 0.030 0.970 34 H 0.346 0.654 35 H 0.070 0.930 36 H 0.039 0.961 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.143 0.857 41 H 0.168 0.832 42 H 0.106 0.894 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.099 -18.083 -4.589 25.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.465 4.465 8 H 0.124 0.876 9 O -0.122 6.122 10 C 0.110 3.890 11 C -0.214 4.214 12 C -0.073 4.073 13 C -0.178 4.178 14 C -0.012 4.012 15 N -0.313 5.313 16 C -0.030 4.030 17 C -0.094 4.094 18 C -0.117 4.117 19 C -0.167 4.167 20 C -0.092 4.092 21 C -0.120 4.120 22 C -0.236 4.236 23 C -0.075 4.075 24 N -0.188 5.188 25 H 0.255 0.745 26 C 0.013 3.987 27 C -0.085 4.085 28 C -0.240 4.240 29 H 0.090 0.910 30 H 0.134 0.866 31 H 0.129 0.871 32 H 0.088 0.912 33 H 0.048 0.952 34 H 0.165 0.835 35 H 0.089 0.911 36 H 0.058 0.942 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.161 0.839 41 H 0.185 0.815 42 H 0.124 0.876 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 18.599 -17.270 -4.511 25.779 hybrid contribution -0.667 0.391 0.501 0.921 sum 17.932 -16.879 -4.010 24.951 Atomic orbital electron populations 1.69647 1.05575 1.28519 1.47968 1.24474 0.95035 0.98853 0.95640 0.86173 0.80308 0.81398 0.78992 1.19849 1.20791 1.18357 1.20773 0.76889 0.96639 1.52241 0.87632 1.83571 1.22629 1.25810 1.80184 1.19143 0.91722 0.85480 0.92689 1.20212 0.91957 0.97914 1.11288 1.20429 0.98173 0.91151 0.97559 1.19158 0.93238 0.93728 1.11689 1.20651 0.98196 0.93041 0.89313 1.60652 1.32490 1.25056 1.13147 1.20790 0.99015 0.90437 0.92790 1.18783 0.94535 0.99477 0.96575 1.20734 0.98695 0.97066 0.95215 1.20568 0.98442 1.02313 0.95330 1.20244 0.94015 0.95702 0.99222 1.19232 0.97696 1.00733 0.94299 1.21649 0.98747 1.02936 1.00281 1.21828 0.95772 1.01660 0.88274 1.41805 1.22351 1.37559 1.17064 0.74510 1.17938 0.91965 0.93872 0.94893 1.20647 0.93544 0.96653 0.97651 1.21239 1.01098 0.91844 1.09843 0.91025 0.86612 0.87073 0.91210 0.95161 0.83495 0.91121 0.94239 0.86053 0.86177 0.86320 0.83879 0.81471 0.87609 0.84998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.40 13.96 55.48 0.77 -24.63 16 2 C 0.06 1.78 5.49 -17.51 -0.10 1.68 16 3 Si 0.91 21.69 28.62 -169.99 -4.86 16.82 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.26 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.39 -10.99 9.95 30.89 0.31 -10.69 16 8 H 0.11 3.04 5.44 -52.48 -0.29 2.75 16 9 O -0.22 -5.74 8.59 0.05 0.00 -5.74 16 10 C 0.16 3.73 6.65 -39.11 -0.26 3.47 16 11 C -0.19 -3.84 9.99 -39.39 -0.39 -4.23 16 12 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 13 C -0.18 -2.82 5.40 -104.57 -0.56 -3.38 16 14 C 0.12 1.43 5.81 -4.97 -0.03 1.40 16 15 N -0.68 -8.01 6.48 -116.33 -0.75 -8.76 16 16 C 0.10 0.98 5.83 -4.98 -0.03 0.95 16 17 C -0.09 -0.99 5.41 -104.47 -0.56 -1.55 16 18 C -0.10 -0.98 9.64 -39.54 -0.38 -1.36 16 19 C -0.15 -1.44 9.97 -39.95 -0.40 -1.84 16 20 C -0.07 -0.76 10.05 -39.65 -0.40 -1.16 16 21 C -0.11 -1.33 6.37 -105.14 -0.67 -2.00 16 22 C -0.21 -2.06 11.08 -37.67 -0.42 -2.47 16 23 C 0.05 0.44 11.81 -16.73 -0.20 0.24 16 24 N -0.59 -5.65 6.07 -10.65 -0.06 -5.71 16 25 H 0.42 3.38 8.96 -40.82 -0.37 3.01 16 26 C 0.12 1.40 6.98 -83.99 -0.59 0.81 16 27 C -0.07 -1.17 9.69 -39.61 -0.38 -1.55 16 28 C -0.22 -4.73 9.17 -39.40 -0.36 -5.09 16 29 H 0.28 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 31 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 32 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 33 H 0.03 0.35 8.08 -51.93 -0.42 -0.07 16 34 H 0.35 4.38 8.72 -39.29 -0.34 4.04 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.04 0.36 8.00 -51.93 -0.42 -0.05 16 37 H 0.12 1.01 8.03 -52.48 -0.42 0.59 16 38 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 39 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.17 0.85 8.06 -52.48 -0.42 0.43 16 42 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 43 H 0.13 2.98 5.64 -52.49 -0.30 2.68 16 LS Contribution 367.82 15.07 5.54 5.54 Total: -1.00 -30.97 367.82 -10.66 -41.63 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -5.48 Total: 8.90 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: -5.81 Total: -28.05 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: -0.04 Total: -39.10 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: 0.00 Total: -5.74 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.86 Total: 16.82 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.97 -10.66 -41.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729685567.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.362 kcal (2) G-P(sol) polarization free energy of solvation -30.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds