Wall clock time and date at job start Tue Mar 31 2020 13:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00167 * 2 1 4 4 H 1.48498 * 109.47106 * 270.00223 * 3 2 1 5 5 H 1.48504 * 109.46849 * 30.00278 * 3 2 1 6 6 H 1.48503 * 109.46988 * 149.99719 * 3 2 1 7 7 C 1.38812 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00151 * 163.07371 * 7 2 1 9 9 N 1.36937 * 119.99988 * 343.06245 * 7 2 1 10 10 C 1.46927 * 120.63140 * 331.84630 * 9 7 2 11 11 C 1.53198 * 108.77247 * 233.62802 * 10 9 7 12 12 C 1.53040 * 109.31129 * 305.36259 * 11 10 9 13 13 N 1.46904 * 109.45940 * 181.38570 * 12 11 10 14 14 C 1.46902 * 111.00028 * 154.99840 * 13 12 11 15 15 H 1.08997 * 109.46621 * 35.00194 * 14 13 12 16 16 C 1.50701 * 109.47098 * 275.00440 * 14 13 12 17 17 O 1.20826 * 120.00111 * 359.97438 * 16 14 13 18 18 O 1.34224 * 119.99885 * 180.02562 * 16 14 13 19 19 C 1.50696 * 109.47002 * 155.00153 * 14 13 12 20 20 C 1.38249 * 119.97415 * 220.00014 * 19 14 13 21 21 C 1.38195 * 120.02516 * 179.97438 * 20 19 14 22 22 C 1.38460 * 119.97762 * 0.02562 * 21 20 19 23 23 F 1.35099 * 120.03132 * 179.97438 * 22 21 20 24 24 C 1.38465 * 119.94740 * 0.25185 * 22 21 20 25 25 C 1.38203 * 119.97031 * 359.47135 * 24 22 21 26 26 C 1.53035 * 109.53810 * 61.36903 * 12 11 10 27 27 C 1.46925 * 120.63022 * 151.86338 * 9 7 2 28 28 H 0.97003 * 120.00286 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.59080 * 113.84089 * 10 9 7 30 30 H 1.08998 * 109.70040 * 353.47664 * 10 9 7 31 31 H 1.09000 * 109.49539 * 185.41421 * 11 10 9 32 32 H 1.09000 * 109.52146 * 65.33040 * 11 10 9 33 33 H 1.08993 * 109.46106 * 301.35722 * 12 11 10 34 34 H 1.00909 * 110.99674 * 31.04937 * 13 12 11 35 35 H 0.96701 * 117.00492 * 179.97438 * 18 16 14 36 36 H 1.08000 * 119.98733 * 359.97438 * 20 19 14 37 37 H 1.07999 * 120.01467 * 180.02562 * 21 20 19 38 38 H 1.07999 * 120.01792 * 179.74458 * 24 22 21 39 39 H 1.08001 * 119.98512 * 180.29517 * 25 24 22 40 40 H 1.08998 * 109.50355 * 58.58240 * 26 12 11 41 41 H 1.09005 * 109.49820 * 178.68397 * 26 12 11 42 42 H 1.09004 * 109.58843 * 246.15929 * 27 9 7 43 43 H 1.08998 * 109.58628 * 6.44441 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2223 -0.2729 9 7 1.3700 -2.3625 0.3444 10 6 0.2262 -2.3408 1.2663 11 6 0.4982 -3.3201 2.4127 12 6 0.8132 -4.7015 1.8342 13 7 1.0421 -5.6509 2.9315 14 6 0.7624 -7.0280 2.5032 15 1 1.0523 -7.1497 1.4596 16 6 -0.7104 -7.3109 2.6517 17 8 -1.4509 -6.4535 3.0718 18 8 -1.1993 -8.5156 2.3183 19 6 1.5473 -7.9892 3.3581 20 6 2.1389 -9.0992 2.7843 21 6 2.8594 -9.9811 3.5672 22 6 2.9883 -9.7530 4.9268 23 9 3.6920 -10.6147 5.6933 24 6 2.3905 -8.6440 5.5013 25 6 1.6753 -7.7604 4.7154 26 6 2.0684 -4.6173 0.9627 27 6 1.8142 -3.6528 -0.2000 28 1 -0.4851 0.8400 -0.0004 29 1 -0.6769 -2.6417 0.7354 30 1 0.0966 -1.3357 1.6675 31 1 -0.3822 -3.3855 3.0519 32 1 1.3477 -2.9684 2.9982 33 1 -0.0268 -5.0418 1.2289 34 1 0.4933 -5.4059 3.7421 35 1 -2.1502 -8.6502 2.4312 36 1 2.0379 -9.2772 1.7239 37 1 3.3218 -10.8480 3.1188 38 1 2.4868 -8.4672 6.5624 39 1 1.2129 -6.8928 5.1625 40 1 2.9034 -4.2533 1.5614 41 1 2.3056 -5.6061 0.5700 42 1 1.0406 -4.0607 -0.8506 43 1 2.7334 -3.5125 -0.7687 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739087359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:06 Heat of formation + Delta-G solvation = -86.019767 kcal Electronic energy + Delta-G solvation = -27316.354608 eV Core-core repulsion = 23276.362523 eV Total energy + Delta-G solvation = -4039.992085 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.11866 -40.90129 -39.15384 -37.99049 -36.38911 -35.18922 -32.80170 -31.45038 -31.12338 -29.89917 -28.97810 -26.67741 -24.54376 -23.30022 -22.86825 -22.25634 -21.53881 -20.59504 -19.14676 -18.35351 -17.92724 -17.25414 -16.94802 -16.55531 -16.26288 -15.79931 -15.28607 -15.00541 -14.75080 -14.54277 -14.01520 -13.86878 -13.77876 -13.52817 -13.49331 -13.05966 -12.84137 -12.65323 -12.44107 -12.18224 -11.85576 -11.66521 -11.39637 -11.25644 -11.03398 -11.00714 -10.84619 -10.68809 -10.36941 -10.23129 -9.95257 -9.61957 -9.50577 -9.35076 -8.84101 -8.61748 -8.44753 -6.66289 -5.77814 -3.19990 0.81552 0.99689 1.97035 2.79964 3.33745 3.38596 3.45666 3.48424 4.00686 4.03768 4.39781 4.46538 4.51150 4.63528 4.87789 4.99144 5.08184 5.21072 5.34617 5.39963 5.48924 5.62797 5.64008 5.67810 5.86247 5.86913 5.95936 6.07775 6.19032 6.25860 6.33149 6.39117 6.45429 6.60464 6.61781 6.66486 6.79381 6.98294 7.10342 7.31430 7.37364 7.65488 7.67318 7.81071 8.46476 9.22524 9.86136 10.42920 11.30997 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019974 B = 0.002896 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.489638 B = 9665.212146 C =10313.262474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.175 3.825 11 C -0.139 4.139 12 C 0.094 3.906 13 N -0.652 5.652 14 C 0.138 3.862 15 H 0.127 0.873 16 C 0.453 3.547 17 O -0.507 6.507 18 O -0.514 6.514 19 C -0.079 4.079 20 C -0.069 4.069 21 C -0.154 4.154 22 C 0.099 3.901 23 F -0.142 7.142 24 C -0.155 4.155 25 C -0.063 4.063 26 C -0.119 4.119 27 C 0.145 3.855 28 H 0.253 0.747 29 H 0.016 0.984 30 H 0.089 0.911 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.040 0.960 34 H 0.351 0.649 35 H 0.406 0.594 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.068 0.932 41 H 0.046 0.954 42 H 0.014 0.986 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.322 -21.014 8.030 22.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.314 5.314 10 C 0.049 3.951 11 C -0.179 4.179 12 C -0.014 4.014 13 N -0.284 5.284 14 C 0.025 3.975 15 H 0.144 0.856 16 C 0.292 3.708 17 O -0.394 6.394 18 O -0.324 6.324 19 C -0.080 4.080 20 C -0.087 4.087 21 C -0.173 4.173 22 C 0.080 3.920 23 F -0.120 7.120 24 C -0.173 4.173 25 C -0.082 4.082 26 C -0.159 4.159 27 C 0.018 3.982 28 H 0.064 0.936 29 H 0.034 0.966 30 H 0.108 0.892 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.172 0.828 35 H 0.265 0.735 36 H 0.154 0.846 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.086 0.914 41 H 0.065 0.935 42 H 0.032 0.968 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.123 -20.613 8.007 22.215 hybrid contribution -1.170 0.627 0.192 1.341 sum 0.953 -19.986 8.199 21.623 Atomic orbital electron populations 1.70027 1.05289 1.25496 1.54010 1.25048 0.95275 0.98430 1.00938 0.86311 0.79203 0.83659 0.77682 1.21434 1.21590 1.20440 1.19177 0.92551 0.84796 1.41589 0.91687 1.44055 1.35848 1.01581 1.49939 1.20725 0.88590 0.98077 0.87753 1.22385 1.00436 0.94672 1.00421 1.21594 0.97016 0.91932 0.90846 1.61128 1.59443 0.98488 1.09380 1.20329 0.84703 0.90890 1.01531 0.85580 1.24907 0.93293 0.79331 0.73225 1.90761 1.60039 1.46485 1.42121 1.84577 1.31969 1.35984 1.79869 1.19379 0.99636 0.95144 0.93804 1.20859 0.94995 0.92587 1.00277 1.21078 1.02432 1.01777 0.92027 1.17767 0.95311 0.89739 0.89232 1.91497 1.76489 1.68662 1.75398 1.21124 1.00385 0.94599 1.01230 1.20843 0.96674 0.97907 0.92758 1.22074 0.97215 0.98625 0.97984 1.20915 0.97609 0.86957 0.92750 0.93648 0.96586 0.89242 0.93146 0.91715 0.94207 0.82781 0.73512 0.84593 0.84559 0.84628 0.84846 0.91368 0.93514 0.96831 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.31 11.19 55.49 0.62 -25.69 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 21.69 29.59 -169.99 -5.03 16.66 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.25 -6.90 9.58 -15.06 -0.14 -7.04 16 8 H 0.07 1.75 7.89 -52.49 -0.41 1.33 16 9 N -0.59 -14.77 2.99 -172.31 -0.52 -15.29 16 10 C 0.18 4.19 5.30 -3.71 -0.02 4.17 16 11 C -0.14 -2.67 5.36 -26.61 -0.14 -2.81 16 12 C 0.09 1.56 2.10 -67.67 -0.14 1.42 16 13 N -0.65 -8.78 5.36 -102.14 -0.55 -9.32 16 14 C 0.14 1.57 2.51 -70.02 -0.18 1.39 16 15 H 0.13 1.34 6.96 -51.93 -0.36 0.98 16 16 C 0.45 5.38 7.31 36.01 0.26 5.64 16 17 O -0.51 -7.60 16.41 -18.75 -0.31 -7.90 16 18 O -0.51 -4.65 13.34 -39.24 -0.52 -5.17 16 19 C -0.08 -0.80 4.88 -104.62 -0.51 -1.31 16 20 C -0.07 -0.61 9.67 -39.59 -0.38 -0.99 16 21 C -0.15 -1.35 10.03 -39.52 -0.40 -1.75 16 22 C 0.10 0.98 7.30 -39.42 -0.29 0.69 16 23 F -0.14 -1.49 17.27 2.25 0.04 -1.46 16 24 C -0.15 -1.47 10.03 -39.51 -0.40 -1.86 16 25 C -0.06 -0.64 9.32 -39.59 -0.37 -1.00 16 26 C -0.12 -2.02 5.57 -26.61 -0.15 -2.17 16 27 C 0.14 2.99 6.52 -3.71 -0.02 2.97 16 28 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 2.40 6.06 -51.93 -0.31 2.08 16 31 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.04 0.70 7.63 -51.93 -0.40 0.31 16 34 H 0.35 4.76 6.69 -39.29 -0.26 4.50 16 35 H 0.41 2.14 9.10 45.56 0.41 2.55 16 36 H 0.14 0.93 8.04 -52.49 -0.42 0.51 16 37 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 39 H 0.13 1.27 7.24 -52.49 -0.38 0.89 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.05 0.67 7.41 -51.93 -0.38 0.29 16 42 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 LS Contribution 357.91 15.07 5.39 5.39 Total: -1.00 -31.83 357.91 -8.86 -40.69 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -5.03 Total: 4.80 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -2.96 Total: -2.70 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.44 Total: -50.30 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -0.83 Total: -13.08 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.83 -8.86 -40.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739087359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.334 kcal (2) G-P(sol) polarization free energy of solvation -31.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds