Wall clock time and date at job start Tue Mar 31 2020 12:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46894 * 109.47238 * 2 1 4 4 C 1.46898 * 111.00323 * 164.45039 * 3 2 1 5 5 C 1.50697 * 109.46843 * 293.95024 * 4 3 2 6 6 H 1.07999 * 120.00503 * 359.97438 * 5 4 3 7 7 C 1.37884 * 120.00514 * 179.97438 * 5 4 3 8 8 N 1.31521 * 119.99101 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00668 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46753 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47218 * 120.00058 * 9 7 5 12 12 H 1.48492 * 109.47419 * 240.00506 * 9 7 5 13 13 C 1.46903 * 110.99738 * 288.40072 * 3 2 1 14 14 C 1.50702 * 109.47089 * 164.51521 * 13 3 2 15 15 C 1.36987 * 120.18684 * 104.65003 * 14 13 3 16 16 C 1.39996 * 118.18065 * 179.78621 * 15 14 13 17 17 C 1.45860 * 134.24009 * 180.19362 * 16 15 14 18 18 C 1.50707 * 126.17081 * 0.26410 * 17 16 15 19 19 N 1.30233 * 107.65967 * 180.26518 * 17 16 15 20 20 N 1.39835 * 110.09006 * 0.02562 * 19 17 16 21 21 C 1.46504 * 125.38662 * 180.02562 * 20 19 17 22 22 C 1.36824 * 109.23070 * 0.02562 * 20 19 17 23 23 N 1.32756 * 133.56620 * 180.02562 * 22 20 19 24 24 C 1.31637 * 121.45517 * 179.97438 * 23 22 20 25 25 Cl 1.73596 * 119.22159 * 180.02562 * 24 23 22 26 26 H 1.09005 * 109.47234 * 305.83119 * 1 2 3 27 27 H 1.09000 * 109.47324 * 65.83795 * 1 2 3 28 28 H 1.08999 * 109.47358 * 185.83646 * 1 2 3 29 29 H 1.08998 * 109.46920 * 239.99650 * 2 1 3 30 30 H 1.09005 * 109.47350 * 119.99782 * 2 1 3 31 31 H 1.09001 * 109.47152 * 53.94744 * 4 3 2 32 32 H 1.09005 * 109.47588 * 173.95308 * 4 3 2 33 33 H 0.97004 * 119.99311 * 179.97438 * 8 7 5 34 34 H 1.09006 * 109.47309 * 284.51269 * 13 3 2 35 35 H 1.08996 * 109.47241 * 44.51650 * 13 3 2 36 36 H 1.07999 * 120.90953 * 0.02562 * 15 14 13 37 37 H 1.09000 * 109.47284 * 269.97521 * 18 17 16 38 38 H 1.08998 * 109.46814 * 29.97541 * 18 17 16 39 39 H 1.08994 * 109.47107 * 149.97188 * 18 17 16 40 40 H 1.08996 * 109.47137 * 269.96188 * 21 20 19 41 41 H 1.09004 * 109.47030 * 29.96149 * 21 20 19 42 42 H 1.09002 * 109.47479 * 149.95610 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4408 1.4409 0.3676 5 6 3.6068 1.0020 1.7997 6 1 2.7430 0.7111 2.3790 7 6 4.8615 0.9719 2.3706 8 7 5.9134 1.3267 1.6653 9 14 5.0672 0.4286 4.1459 10 1 3.7395 0.0842 4.7151 11 1 5.9524 -0.7625 4.1997 12 1 5.6731 1.5316 4.9341 13 6 1.7870 2.0255 -1.3014 14 6 1.9402 3.5182 -1.1611 15 6 3.0646 4.1425 -1.6327 16 6 3.1612 5.5312 -1.4843 17 6 4.1643 6.5261 -1.8471 18 6 5.4711 6.2570 -2.5479 19 7 3.7270 7.6888 -1.4562 20 7 2.4777 7.5509 -0.8432 21 6 1.6828 8.6458 -0.2815 22 6 2.1152 6.2315 -0.8509 23 7 1.0513 5.5724 -0.4080 24 6 0.9459 4.2674 -0.5443 25 17 -0.4713 3.4643 0.0558 26 1 -0.3634 0.6016 0.8332 27 1 -0.3634 0.4206 -0.9376 28 1 -0.3634 -1.0223 0.1045 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 4.0109 0.7785 -0.2838 32 1 3.8051 2.4622 0.2561 33 1 6.7961 1.3059 2.0671 34 1 2.5118 1.6523 -2.0249 35 1 0.7787 1.7945 -1.6449 36 1 3.8532 3.5793 -2.1094 37 1 6.2465 6.0600 -1.8077 38 1 5.3621 5.3900 -3.1995 39 1 5.7497 7.1263 -3.1435 40 1 1.9458 8.7850 0.7670 41 1 1.8880 9.5636 -0.8325 42 1 0.6230 8.4035 -0.3613 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747963204.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:16 Heat of formation + Delta-G solvation = 97.135655 kcal Electronic energy + Delta-G solvation = -25251.482224 eV Core-core repulsion = 21680.061481 eV Total energy + Delta-G solvation = -3571.420743 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.126 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.50144 -38.61027 -36.74124 -36.12867 -34.35041 -32.72232 -32.23647 -30.41097 -29.63906 -29.46990 -27.35316 -25.65029 -24.24292 -23.77420 -22.35018 -21.75301 -20.07983 -19.52798 -17.51501 -16.94814 -16.43386 -16.14278 -15.88642 -15.04523 -14.50683 -14.35285 -13.92125 -13.71161 -13.58068 -13.47085 -13.36586 -13.19536 -12.82766 -12.63177 -12.34853 -12.13086 -12.07136 -11.87888 -11.61920 -11.27787 -11.02331 -10.94304 -10.80466 -10.70715 -10.64140 -10.47078 -10.34227 -10.06506 -9.73038 -9.45251 -9.15055 -8.63939 -8.42656 -7.99910 -7.23689 -6.02472 -4.02077 0.80390 1.38824 1.83075 2.42827 2.44260 3.31105 3.39008 3.43860 3.76705 4.21246 4.37533 4.44339 4.53951 4.94988 5.03147 5.10770 5.19324 5.20433 5.33583 5.35595 5.43506 5.51853 5.56897 5.66967 5.74954 5.80377 5.90391 5.95833 6.04392 6.14857 6.31534 6.37993 6.40629 6.58628 6.73392 6.80761 6.82516 7.30125 7.33841 7.49105 7.81714 7.86346 8.09728 8.21601 8.55225 9.05767 9.61805 11.08528 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.010322 B = 0.005044 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.127058 B = 5549.490112 C = 6907.107890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.059 3.941 3 N -0.527 5.527 4 C 0.192 3.808 5 C -0.503 4.503 6 H 0.064 0.936 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.893 3.107 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.098 3.902 14 C -0.137 4.137 15 C 0.028 3.972 16 C -0.221 4.221 17 C 0.116 3.884 18 C -0.075 4.075 19 N -0.247 5.247 20 N -0.398 5.398 21 C 0.116 3.884 22 C 0.328 3.672 23 N -0.509 5.509 24 C 0.271 3.729 25 Cl -0.010 7.010 26 H 0.060 0.940 27 H 0.043 0.957 28 H 0.046 0.954 29 H 0.018 0.982 30 H 0.087 0.913 31 H -0.010 1.010 32 H 0.031 0.969 33 H 0.259 0.741 34 H 0.038 0.962 35 H 0.079 0.921 36 H 0.147 0.853 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.457 8.162 -9.835 14.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.069 4.069 3 N -0.252 5.252 4 C 0.067 3.933 5 C -0.541 4.541 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.722 3.278 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.031 4.031 14 C -0.142 4.142 15 C 0.000 4.000 16 C -0.231 4.231 17 C -0.062 4.062 18 C -0.134 4.134 19 N -0.061 5.061 20 N -0.190 5.190 21 C -0.026 4.026 22 C 0.089 3.911 23 N -0.226 5.226 24 C 0.096 3.904 25 Cl 0.019 6.981 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.036 0.964 30 H 0.105 0.895 31 H 0.008 0.992 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.097 0.903 36 H 0.165 0.835 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.165 10.306 -8.864 15.857 hybrid contribution 0.967 -1.808 0.332 2.077 sum -7.198 8.498 -8.533 14.030 Atomic orbital electron populations 1.21828 0.96690 1.00280 1.01447 1.21935 0.94027 0.89883 1.01019 1.62138 1.22682 1.15902 1.24452 1.19754 0.80752 0.96867 0.95920 1.21192 0.92728 1.43472 0.96733 0.91791 1.24956 0.95953 0.95699 0.97919 1.69961 0.98600 1.48794 1.36468 0.86507 0.78149 0.78150 0.85043 1.19631 1.21140 1.21153 1.20896 1.01116 0.88092 0.92964 1.19954 0.94225 0.97740 1.02324 1.20642 0.95402 0.91050 0.92951 1.20336 0.97612 0.95108 1.10041 1.23456 0.96547 0.88649 0.97534 1.20296 0.90173 1.03077 0.99851 1.76623 0.94221 1.22273 1.12978 1.47917 1.15388 1.03414 1.52249 1.21746 0.94463 0.87701 0.98642 1.18485 0.90797 0.86376 0.95433 1.65804 1.24391 1.08669 1.23764 1.21196 0.89570 0.87357 0.92307 1.98398 1.37376 1.76327 1.86022 0.92120 0.93767 0.93477 0.96351 0.89498 0.99193 0.95125 0.93107 0.94341 0.90270 0.83528 0.89328 0.89735 0.90279 0.91284 0.89675 0.89383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.86 37.16 0.37 -1.80 16 2 C 0.06 1.08 5.53 -3.83 -0.02 1.06 16 3 N -0.53 -10.66 4.28 -237.52 -1.02 -11.68 16 4 C 0.19 4.76 4.57 -4.98 -0.02 4.74 16 5 C -0.50 -13.80 8.29 -34.44 -0.29 -14.08 16 6 H 0.06 1.76 7.25 -52.49 -0.38 1.38 16 7 C 0.06 1.56 5.46 -17.81 -0.10 1.46 16 8 N -0.90 -26.17 13.29 55.43 0.74 -25.43 16 9 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.10 1.66 4.27 -4.97 -0.02 1.64 16 14 C -0.14 -2.38 4.66 -104.82 -0.49 -2.87 16 15 C 0.03 0.47 8.99 -39.38 -0.35 0.11 16 16 C -0.22 -3.72 6.34 -105.18 -0.67 -4.39 16 17 C 0.12 1.72 7.44 -80.22 -0.60 1.13 16 18 C -0.08 -0.80 10.48 36.01 0.38 -0.42 16 19 N -0.25 -3.84 12.40 34.82 0.43 -3.41 16 20 N -0.40 -6.24 4.04 -67.20 -0.27 -6.52 16 21 C 0.12 1.30 11.44 59.85 0.68 1.98 16 22 C 0.33 5.78 7.97 -156.12 -1.24 4.54 16 23 N -0.51 -9.24 10.37 -9.46 -0.10 -9.33 16 24 C 0.27 4.83 7.26 -17.38 -0.13 4.71 16 25 Cl -0.01 -0.16 27.62 -51.86 -1.43 -1.59 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.04 0.60 6.74 -51.93 -0.35 0.25 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.02 0.32 8.06 -51.93 -0.42 -0.10 16 30 H 0.09 1.78 6.59 -51.93 -0.34 1.43 16 31 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 32 H 0.03 0.82 6.62 -51.93 -0.34 0.48 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.04 0.63 7.89 -51.93 -0.41 0.22 16 35 H 0.08 1.20 5.79 -51.93 -0.30 0.90 16 36 H 0.15 2.12 8.03 -52.49 -0.42 1.70 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 363.94 15.07 5.48 5.48 Total: -1.00 -32.09 363.94 -9.59 -41.68 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -5.90 Total: -3.65 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -2.50 Total: -2.19 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: -0.22 Total: -56.36 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.43 Total: -1.59 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.09 -9.59 -41.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747963204.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.811 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds