Wall clock time and date at job start Tue Mar 31 2020 12:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46894 * 109.47238 * 2 1 4 4 C 1.46898 * 111.00323 * 164.45039 * 3 2 1 5 5 C 1.50697 * 109.46843 * 293.95024 * 4 3 2 6 6 H 1.07999 * 120.00503 * 359.97438 * 5 4 3 7 7 C 1.37884 * 120.00514 * 179.97438 * 5 4 3 8 8 N 1.31521 * 119.99101 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00668 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46753 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47218 * 120.00058 * 9 7 5 12 12 H 1.48492 * 109.47419 * 240.00506 * 9 7 5 13 13 C 1.46903 * 110.99738 * 288.40072 * 3 2 1 14 14 C 1.50702 * 109.47089 * 164.51521 * 13 3 2 15 15 C 1.36987 * 120.18684 * 104.65003 * 14 13 3 16 16 C 1.39996 * 118.18065 * 179.78621 * 15 14 13 17 17 C 1.45860 * 134.24009 * 180.19362 * 16 15 14 18 18 C 1.50707 * 126.17081 * 0.26410 * 17 16 15 19 19 N 1.30233 * 107.65967 * 180.26518 * 17 16 15 20 20 N 1.39835 * 110.09006 * 0.02562 * 19 17 16 21 21 C 1.46504 * 125.38662 * 180.02562 * 20 19 17 22 22 C 1.36824 * 109.23070 * 0.02562 * 20 19 17 23 23 N 1.32756 * 133.56620 * 180.02562 * 22 20 19 24 24 C 1.31637 * 121.45517 * 179.97438 * 23 22 20 25 25 Cl 1.73596 * 119.22159 * 180.02562 * 24 23 22 26 26 H 1.09005 * 109.47234 * 305.83119 * 1 2 3 27 27 H 1.09000 * 109.47324 * 65.83795 * 1 2 3 28 28 H 1.08999 * 109.47358 * 185.83646 * 1 2 3 29 29 H 1.08998 * 109.46920 * 239.99650 * 2 1 3 30 30 H 1.09005 * 109.47350 * 119.99782 * 2 1 3 31 31 H 1.09001 * 109.47152 * 53.94744 * 4 3 2 32 32 H 1.09005 * 109.47588 * 173.95308 * 4 3 2 33 33 H 0.97004 * 119.99311 * 179.97438 * 8 7 5 34 34 H 1.09006 * 109.47309 * 284.51269 * 13 3 2 35 35 H 1.08996 * 109.47241 * 44.51650 * 13 3 2 36 36 H 1.07999 * 120.90953 * 0.02562 * 15 14 13 37 37 H 1.09000 * 109.47284 * 269.97521 * 18 17 16 38 38 H 1.08998 * 109.46814 * 29.97541 * 18 17 16 39 39 H 1.08994 * 109.47107 * 149.97188 * 18 17 16 40 40 H 1.08996 * 109.47137 * 269.96188 * 21 20 19 41 41 H 1.09004 * 109.47030 * 29.96149 * 21 20 19 42 42 H 1.09002 * 109.47479 * 149.95610 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4408 1.4409 0.3676 5 6 3.6068 1.0020 1.7997 6 1 2.7430 0.7111 2.3790 7 6 4.8615 0.9719 2.3706 8 7 5.9134 1.3267 1.6653 9 14 5.0672 0.4286 4.1459 10 1 3.7395 0.0842 4.7151 11 1 5.9524 -0.7625 4.1997 12 1 5.6731 1.5316 4.9341 13 6 1.7870 2.0255 -1.3014 14 6 1.9402 3.5182 -1.1611 15 6 3.0646 4.1425 -1.6327 16 6 3.1612 5.5312 -1.4843 17 6 4.1643 6.5261 -1.8471 18 6 5.4711 6.2570 -2.5479 19 7 3.7270 7.6888 -1.4562 20 7 2.4777 7.5509 -0.8432 21 6 1.6828 8.6458 -0.2815 22 6 2.1152 6.2315 -0.8509 23 7 1.0513 5.5724 -0.4080 24 6 0.9459 4.2674 -0.5443 25 17 -0.4713 3.4643 0.0558 26 1 -0.3634 0.6016 0.8332 27 1 -0.3634 0.4206 -0.9376 28 1 -0.3634 -1.0223 0.1045 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 4.0109 0.7785 -0.2838 32 1 3.8051 2.4622 0.2561 33 1 6.7961 1.3059 2.0671 34 1 2.5118 1.6523 -2.0249 35 1 0.7787 1.7945 -1.6449 36 1 3.8532 3.5793 -2.1094 37 1 6.2465 6.0600 -1.8077 38 1 5.3621 5.3900 -3.1995 39 1 5.7497 7.1263 -3.1435 40 1 1.9458 8.7850 0.7670 41 1 1.8880 9.5636 -0.8325 42 1 0.6230 8.4035 -0.3613 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747963204.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:15 Heat of formation + Delta-G solvation = 77.918937 kcal Electronic energy + Delta-G solvation = -25252.315523 eV Core-core repulsion = 21680.061481 eV Total energy + Delta-G solvation = -3572.254043 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.126 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.72380 -39.91740 -38.26017 -37.42229 -35.50367 -34.73660 -33.53998 -31.69447 -31.13796 -30.45200 -28.97439 -27.03403 -25.59540 -25.05741 -24.10785 -23.06273 -21.51075 -20.80727 -18.76126 -18.42265 -18.23157 -17.44144 -17.08496 -16.74575 -16.07161 -15.91157 -15.29748 -15.15526 -14.77683 -14.50057 -14.46429 -14.43247 -14.20080 -13.95766 -13.71154 -13.53857 -13.18425 -13.10982 -12.96751 -12.81554 -12.64074 -12.57569 -12.29047 -12.16692 -12.02944 -12.02157 -11.73648 -11.65711 -11.31255 -11.12309 -10.73223 -10.55863 -9.89352 -9.23861 -8.87290 -8.15898 -6.22167 -0.46947 0.07858 0.57341 1.24936 1.27909 1.38963 1.41197 1.52952 2.40635 2.46624 3.09462 3.15382 3.17659 3.36859 3.53074 3.71017 3.94255 4.08337 4.23703 4.31927 4.34808 4.37731 4.54089 4.59631 4.63806 4.68377 4.77158 4.79639 4.85373 4.93556 5.04879 5.13964 5.18843 5.23614 5.29137 5.43945 5.46910 5.55859 5.64427 5.72651 6.14836 6.27756 6.46574 6.59895 6.73071 6.94674 7.46105 8.94684 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.010322 B = 0.005044 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.127058 B = 5549.490112 C = 6907.107890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.058 3.942 3 N -0.533 5.533 4 C 0.212 3.788 5 C -0.515 4.515 6 H 0.058 0.942 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.955 3.045 10 H -0.266 1.266 11 H -0.277 1.277 12 H -0.285 1.285 13 C 0.102 3.898 14 C -0.152 4.152 15 C 0.028 3.972 16 C -0.238 4.238 17 C 0.117 3.883 18 C -0.075 4.075 19 N -0.258 5.258 20 N -0.403 5.403 21 C 0.108 3.892 22 C 0.308 3.692 23 N -0.521 5.521 24 C 0.258 3.742 25 Cl -0.001 7.001 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.027 0.973 30 H 0.060 0.940 31 H -0.033 1.033 32 H 0.008 0.992 33 H 0.261 0.739 34 H 0.047 0.953 35 H 0.101 0.899 36 H 0.162 0.838 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.074 0.926 41 H 0.109 0.891 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.896 8.172 -10.176 15.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.070 4.070 3 N -0.258 5.258 4 C 0.085 3.915 5 C -0.553 4.553 6 H 0.076 0.924 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.781 3.219 10 H -0.190 1.190 11 H -0.203 1.203 12 H -0.211 1.211 13 C -0.026 4.026 14 C -0.158 4.158 15 C -0.001 4.001 16 C -0.248 4.248 17 C -0.061 4.061 18 C -0.133 4.133 19 N -0.072 5.072 20 N -0.194 5.194 21 C -0.032 4.032 22 C 0.068 3.932 23 N -0.239 5.239 24 C 0.083 3.917 25 Cl 0.028 6.972 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.045 0.955 30 H 0.078 0.922 31 H -0.015 1.015 32 H 0.026 0.974 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.119 0.881 36 H 0.180 0.820 37 H 0.108 0.892 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.093 0.907 41 H 0.127 0.873 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.628 10.328 -9.210 16.307 hybrid contribution 1.081 -1.766 0.403 2.109 sum -7.547 8.562 -8.807 14.416 Atomic orbital electron populations 1.21731 0.93784 1.01724 1.01876 1.21962 0.96297 0.88586 1.00121 1.62039 1.19532 1.17345 1.26865 1.19341 0.83226 0.94571 0.94337 1.21499 0.92616 1.43160 0.98069 0.92382 1.25733 0.95784 0.95857 1.01830 1.70062 0.98999 1.49820 1.38123 0.85547 0.78269 0.77820 0.80300 1.19037 1.20269 1.21136 1.20936 1.02543 0.87657 0.91439 1.20048 0.94688 0.97887 1.03176 1.20879 0.95440 0.91269 0.92468 1.20665 0.98296 0.95556 1.10311 1.24078 0.97376 0.87719 0.96964 1.20486 0.88007 1.04809 1.00019 1.76607 0.94422 1.22687 1.13488 1.48322 1.15598 1.03522 1.51952 1.22040 0.94394 0.87551 0.99214 1.18825 0.91058 0.87483 0.95838 1.65814 1.24898 1.08889 1.24325 1.21404 0.90142 0.87563 0.92585 1.98388 1.36801 1.76101 1.85916 0.93186 0.92090 0.91233 0.95470 0.92184 1.01543 0.97400 0.92968 0.93476 0.88096 0.82019 0.89154 0.88078 0.88146 0.90709 0.87271 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.73 9.86 71.98 0.71 -3.02 16 2 C 0.06 2.08 5.53 86.30 0.48 2.55 16 3 N -0.53 -21.44 4.28 -905.37 -3.87 -25.32 16 4 C 0.21 10.66 4.57 85.56 0.39 11.05 16 5 C -0.51 -28.60 8.29 25.60 0.21 -28.39 16 6 H 0.06 3.23 7.25 -2.91 -0.02 3.21 16 7 C 0.01 0.34 5.46 84.66 0.46 0.80 16 8 N -0.93 -54.66 13.29 21.45 0.28 -54.38 16 9 Si 0.95 44.52 29.54 68.60 2.03 46.54 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 13 C 0.10 3.38 4.27 85.56 0.37 3.75 16 14 C -0.15 -5.26 4.66 -19.99 -0.09 -5.36 16 15 C 0.03 0.92 8.99 22.40 0.20 1.12 16 16 C -0.24 -7.97 6.34 -20.22 -0.13 -8.10 16 17 C 0.12 3.36 7.44 44.77 0.33 3.69 16 18 C -0.07 -1.46 10.48 71.24 0.75 -0.71 16 19 N -0.26 -7.79 12.40 -43.74 -0.54 -8.34 16 20 N -0.40 -12.40 4.04 -366.54 -1.48 -13.88 16 21 C 0.11 2.32 11.44 127.77 1.46 3.78 16 22 C 0.31 10.82 7.97 134.13 1.07 11.89 16 23 N -0.52 -18.94 10.37 -183.83 -1.91 -20.84 16 24 C 0.26 9.16 7.26 84.89 0.62 9.77 16 25 Cl 0.00 -0.02 27.62 -2.72 -0.08 -0.10 16 26 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 27 H 0.06 1.49 6.74 -2.39 -0.02 1.48 16 28 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.03 0.92 8.06 -2.39 -0.02 0.90 16 30 H 0.06 2.46 6.59 -2.38 -0.02 2.44 16 31 H -0.03 -1.79 8.12 -2.39 -0.02 -1.81 16 32 H 0.01 0.43 6.62 -2.38 -0.02 0.42 16 33 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 34 H 0.05 1.48 7.89 -2.38 -0.02 1.46 16 35 H 0.10 2.86 5.79 -2.39 -0.01 2.85 16 36 H 0.16 4.62 8.03 -2.91 -0.02 4.60 16 37 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -69.01 363.94 2.29 -66.72 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: 1.03 Total: 6.77 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 6.82 Total: 2.83 kcal Atomic # 7 Polarization: -115.24 SS G_CDS: -7.52 Total: -122.76 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -0.08 Total: -0.10 kcal Total: -69.01 2.29 -66.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747963204.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.637 kcal (2) G-P(sol) polarization free energy of solvation -69.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds