Wall clock time and date at job start Tue Mar 31 2020 12:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 5 5 S 1.81406 * 109.46873 * 64.99927 * 4 2 1 6 6 C 1.81408 * 102.99807 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.47231 * 179.97438 * 6 5 4 8 8 C 1.38230 * 120.00623 * 269.73151 * 7 6 5 9 9 C 1.38230 * 120.00369 * 179.76451 * 8 7 6 10 10 C 1.38234 * 119.99922 * 0.50616 * 9 8 7 11 11 C 1.38242 * 119.99815 * 359.74804 * 10 9 8 12 12 C 1.38231 * 120.00016 * 0.02562 * 11 10 9 13 13 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 14 14 O 1.20833 * 119.99442 * 119.99997 * 13 2 1 15 15 O 1.34225 * 120.00258 * 300.00808 * 13 2 1 16 16 C 1.45198 * 117.00155 * 179.97438 * 15 13 2 17 17 C 1.53002 * 109.47354 * 179.97438 * 16 15 13 18 18 C 1.52995 * 109.47055 * 179.97438 * 17 16 15 19 19 C 1.50702 * 109.47150 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99507 * 359.97438 * 19 18 17 21 21 C 1.37879 * 120.00169 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00047 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99885 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47167 * 59.99670 * 23 21 19 25 25 H 1.48499 * 109.46881 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47026 * 299.99794 * 23 21 19 27 27 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 29 29 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 30 30 H 1.09000 * 109.47278 * 184.99561 * 4 2 1 31 31 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 32 32 H 1.08993 * 109.47089 * 300.00233 * 6 5 4 33 33 H 1.09008 * 109.46696 * 60.00041 * 6 5 4 34 34 H 1.08004 * 119.99863 * 359.97438 * 8 7 6 35 35 H 1.08000 * 120.00074 * 180.22908 * 9 8 7 36 36 H 1.07994 * 120.00217 * 179.72083 * 10 9 8 37 37 H 1.08001 * 119.99835 * 179.97438 * 11 10 9 38 38 H 1.08000 * 119.99964 * 179.97438 * 12 11 10 39 39 H 1.09000 * 109.46924 * 299.99487 * 16 15 13 40 40 H 1.09003 * 109.47017 * 59.99221 * 16 15 13 41 41 H 1.09000 * 109.46905 * 299.99766 * 17 16 15 42 42 H 1.08993 * 109.47027 * 59.99508 * 17 16 15 43 43 H 1.08997 * 109.47522 * 300.00227 * 18 17 16 44 44 H 1.09003 * 109.47421 * 59.99992 * 18 17 16 45 45 H 0.96999 * 120.00252 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 16 1.5601 0.2158 -2.7266 6 6 2.2431 -0.7795 -4.0808 7 6 1.9224 -0.1223 -5.3984 8 6 0.7556 -0.4447 -6.0658 9 6 0.4591 0.1618 -7.2721 10 6 1.3346 1.0828 -7.8162 11 6 2.5041 1.4013 -7.1514 12 6 2.7982 0.7984 -5.9428 13 6 2.0324 -0.7104 1.2304 14 8 2.7271 -1.6928 1.1195 15 8 1.7080 -0.2519 2.4496 16 6 2.2268 -0.9865 3.5896 17 6 1.7557 -0.3193 4.8834 18 6 2.3018 -1.0937 6.0846 19 6 1.8383 -0.4363 7.3590 20 1 1.2168 0.4460 7.3163 21 6 2.2086 -0.9604 8.5793 22 7 2.9658 -2.0344 8.6313 23 14 1.6335 -0.1458 10.1590 24 1 0.1492 -0.1458 10.2039 25 1 2.1636 -0.8974 11.3249 26 1 2.1300 1.2530 10.2037 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 3.1264 -0.7993 -1.2057 31 1 1.6055 -1.7197 -1.2953 32 1 3.3243 -0.8559 -3.9660 33 1 1.8037 -1.7768 -4.0560 34 1 0.0739 -1.1678 -5.6431 35 1 -0.4543 -0.0874 -7.7917 36 1 1.1052 1.5533 -8.7608 37 1 3.1883 2.1206 -7.5767 38 1 3.7121 1.0469 -5.4236 39 1 1.8626 -2.0133 3.5564 40 1 3.3163 -0.9862 3.5568 41 1 2.1202 0.7074 4.9164 42 1 0.6663 -0.3193 4.9163 43 1 1.9370 -2.1203 6.0515 44 1 3.3913 -1.0942 6.0519 45 1 3.2260 -2.4033 9.4898 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772980344.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:58 Heat of formation + Delta-G solvation = -94.042655 kcal Electronic energy + Delta-G solvation = -22721.505258 eV Core-core repulsion = 19215.085700 eV Total energy + Delta-G solvation = -3506.419558 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.139 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.42858 -39.61631 -36.75465 -34.90178 -33.97813 -33.29457 -31.68930 -31.32341 -28.13817 -27.27850 -27.02702 -24.55138 -23.01054 -22.84962 -21.84510 -20.46772 -20.01141 -17.76234 -17.29438 -16.77179 -16.38401 -16.25564 -16.00541 -15.75076 -15.61461 -15.07139 -14.48883 -14.22874 -13.99259 -13.89012 -13.74997 -13.42608 -13.25869 -13.04231 -12.52120 -12.48597 -12.16632 -12.12661 -11.89722 -11.73968 -11.57947 -11.45194 -11.44058 -10.96176 -10.68839 -10.65192 -10.44995 -10.40721 -10.26699 -9.73967 -9.50920 -9.34602 -9.18834 -9.10390 -8.39354 -7.99493 -6.04249 -4.07493 0.55467 0.98573 1.48974 2.18096 2.27106 2.92680 3.32075 3.36392 3.39040 3.43297 4.15030 4.26614 4.31601 4.42662 4.49640 4.58483 4.70482 4.72886 4.75828 5.01939 5.03573 5.09705 5.19299 5.21264 5.31647 5.35592 5.53518 5.55160 5.57240 5.60989 5.61348 5.69339 5.96549 6.00498 6.01876 6.09046 6.12443 6.47199 6.52147 6.54888 6.81413 6.96695 7.58685 7.69687 7.86118 7.93767 8.34829 8.98465 9.56845 11.07109 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.050261 B = 0.001523 C = 0.001511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.954228 B =18380.336620 C =18522.753686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.067 4.067 3 H 0.116 0.884 4 C -0.078 4.078 5 S -0.235 6.235 6 C -0.050 4.050 7 C -0.073 4.073 8 C -0.101 4.101 9 C -0.121 4.121 10 C -0.116 4.116 11 C -0.121 4.121 12 C -0.101 4.101 13 C 0.466 3.534 14 O -0.513 6.513 15 O -0.353 6.353 16 C 0.068 3.932 17 C -0.109 4.109 18 C 0.024 3.976 19 C -0.523 4.523 20 H 0.057 0.943 21 C 0.058 3.942 22 N -0.895 5.895 23 Si 0.896 3.104 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.517 4.871 -33.718 34.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.087 4.087 3 H 0.134 0.866 4 C -0.226 4.226 5 S -0.005 6.005 6 C -0.198 4.198 7 C -0.074 4.074 8 C -0.121 4.121 9 C -0.139 4.139 10 C -0.135 4.135 11 C -0.139 4.139 12 C -0.121 4.121 13 C 0.307 3.693 14 O -0.402 6.402 15 O -0.269 6.269 16 C -0.005 4.005 17 C -0.147 4.147 18 C -0.013 4.013 19 C -0.561 4.561 20 H 0.075 0.925 21 C -0.144 4.144 22 N -0.533 5.533 23 Si 0.723 3.277 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.202 1.202 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.780 5.370 -33.580 34.216 hybrid contribution 0.623 -0.951 1.083 1.570 sum -3.157 4.419 -32.496 32.947 Atomic orbital electron populations 1.21850 0.91098 1.03413 1.04054 1.20685 0.99037 1.00873 0.88135 0.86581 1.23302 1.04856 1.01315 0.93151 1.87010 1.75603 1.38079 0.99801 1.22317 1.03969 1.00565 0.92906 1.19207 0.95721 0.98200 0.94285 1.21071 0.96073 0.99805 0.95114 1.21156 0.99665 0.97117 0.95936 1.21221 0.94521 0.97818 0.99960 1.21160 0.97413 0.99964 0.95324 1.21080 0.99411 0.95823 0.95761 1.23368 0.77561 0.82879 0.85510 1.90660 1.35848 1.26054 1.87619 1.86490 1.69464 1.56032 1.14919 1.23535 0.98871 0.95563 0.82546 1.21767 1.01185 1.00350 0.91354 1.19050 0.96540 0.95381 0.90342 1.21138 1.31913 1.12389 0.90689 0.92457 1.25024 0.95068 0.95001 0.99304 1.69953 1.36133 1.21681 1.25576 0.86602 0.79069 0.79460 0.82553 1.20173 1.21248 1.20169 0.91872 0.90518 0.90202 0.88896 0.89037 0.88987 0.88965 0.85747 0.85828 0.85980 0.85824 0.85743 0.91493 0.91497 0.92102 0.92102 0.96238 0.96245 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.95 37.16 0.33 -1.06 16 2 C -0.07 -0.72 2.83 -91.77 -0.26 -0.98 16 3 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 4 C -0.08 -0.76 4.73 37.16 0.18 -0.58 16 5 S -0.24 -2.10 20.53 -107.50 -2.21 -4.30 16 6 C -0.05 -0.36 6.07 36.00 0.22 -0.14 16 7 C -0.07 -0.55 5.14 -104.63 -0.54 -1.09 16 8 C -0.10 -0.72 9.70 -39.59 -0.38 -1.10 16 9 C -0.12 -0.77 10.05 -39.59 -0.40 -1.17 16 10 C -0.12 -0.72 10.05 -39.58 -0.40 -1.11 16 11 C -0.12 -0.78 10.05 -39.58 -0.40 -1.18 16 12 C -0.10 -0.73 9.70 -39.58 -0.38 -1.11 16 13 C 0.47 6.87 7.26 36.00 0.26 7.13 16 14 O -0.51 -8.87 15.67 -18.76 -0.29 -9.16 16 15 O -0.35 -5.80 10.12 -39.24 -0.40 -6.20 16 16 C 0.07 1.25 5.47 37.16 0.20 1.45 16 17 C -0.11 -2.26 5.53 -26.73 -0.15 -2.41 16 18 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 19 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 20 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 22 N -0.89 -26.79 13.29 55.43 0.74 -26.06 16 23 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.75 8.11 -51.93 -0.42 0.33 16 29 H 0.08 0.68 7.13 -51.93 -0.37 0.31 16 30 H 0.09 0.94 7.96 -51.92 -0.41 0.53 16 31 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.09 0.60 8.09 -51.93 -0.42 0.18 16 33 H 0.09 0.59 8.08 -51.92 -0.42 0.17 16 34 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 35 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 36 H 0.12 0.50 8.06 -52.49 -0.42 0.08 16 37 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 38 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 40 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 394.50 15.07 5.94 5.94 Total: -1.00 -31.74 394.50 -11.01 -42.74 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -7.50 Total: -3.11 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: -2.26 Total: -16.38 kcal Atomic # 7 Polarization: -26.79 SS G_CDS: 0.74 Total: -26.06 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.69 Total: -15.36 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -2.10 SS G_CDS: -2.21 Total: -4.30 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.74 -11.01 -42.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772980344.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.298 kcal (2) G-P(sol) polarization free energy of solvation -31.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds