Wall clock time and date at job start Tue Mar 31 2020 13:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86807 * 119.99783 * 2 1 4 4 H 1.48502 * 109.46858 * 240.00113 * 3 2 1 5 5 H 1.48504 * 109.46983 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47097 * 120.00472 * 3 2 1 7 7 C 1.39944 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99643 * 167.74878 * 7 2 1 9 9 C 1.41387 * 120.00005 * 347.74723 * 7 2 1 10 10 C 1.40732 * 120.24955 * 332.35332 * 9 7 2 11 11 C 1.37591 * 119.75115 * 180.32467 * 10 9 7 12 12 C 1.38657 * 120.24608 * 359.65408 * 11 10 9 13 13 C 1.38614 * 120.50063 * 0.03071 * 12 11 10 14 14 C 1.37643 * 120.24925 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.12787 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.46838 * 264.99698 * 15 14 13 17 17 O 1.21286 * 119.99657 * 6.07655 * 16 15 14 18 18 N 1.34773 * 119.99907 * 186.08216 * 16 15 14 19 19 C 1.46972 * 120.57529 * 354.03698 * 18 16 15 20 20 C 1.53426 * 107.74284 * 224.35138 * 19 18 16 21 21 C 1.52835 * 108.90794 * 296.76987 * 20 19 18 22 22 C 1.50701 * 110.49550 * 51.62230 * 21 20 19 23 23 N 1.32339 * 118.77491 * 159.28714 * 22 21 20 24 24 C 1.31663 * 122.12655 * 179.75040 * 23 22 21 25 25 C 1.38284 * 121.01984 * 0.03254 * 24 23 22 26 26 C 1.38494 * 118.97484 * 0.06191 * 25 24 23 27 27 C 1.38545 * 121.24974 * 339.16867 * 22 21 20 28 28 H 0.97004 * 119.99996 * 359.97438 * 1 2 3 29 29 H 1.08008 * 120.12468 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.88100 * 179.68178 * 11 10 9 31 31 H 1.07999 * 119.75420 * 180.02562 * 12 11 10 32 32 H 1.07997 * 119.87561 * 179.97438 * 13 12 11 33 33 H 1.08994 * 109.47103 * 144.99787 * 15 14 13 34 34 H 1.08999 * 109.46955 * 24.99562 * 15 14 13 35 35 H 1.08997 * 109.80644 * 343.91578 * 19 18 16 36 36 H 1.09002 * 109.80227 * 104.73625 * 19 18 16 37 37 H 1.08997 * 109.56558 * 56.60287 * 20 19 18 38 38 H 1.09003 * 109.56439 * 176.94423 * 20 19 18 39 39 H 1.08996 * 109.27149 * 171.88047 * 21 20 19 40 40 H 1.08995 * 109.27045 * 291.38950 * 21 20 19 41 41 H 1.07999 * 119.49222 * 180.31213 * 24 23 22 42 42 H 1.08003 * 120.51194 * 180.08713 * 25 24 23 43 43 H 1.07995 * 120.80548 * 179.91732 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6965 -1.2125 5 1 1.2771 2.7465 0.0006 6 1 3.0960 1.6965 1.2124 7 6 2.0079 -1.2120 -0.0005 8 1 3.0695 -1.2225 -0.1990 9 6 1.3251 -2.4226 0.2588 10 6 0.1645 -2.4255 1.0546 11 6 -0.4881 -3.6104 1.3059 12 6 -0.0103 -4.7977 0.7725 13 6 1.1282 -4.8059 -0.0182 14 6 1.7978 -3.6325 -0.2818 15 6 3.0356 -3.6447 -1.1412 16 6 4.2570 -3.7226 -0.2617 17 8 4.1336 -3.8751 0.9352 18 7 5.4862 -3.6226 -0.8052 19 6 5.6565 -3.5686 -2.2640 20 6 6.8158 -4.5028 -2.6344 21 6 8.0995 -3.9777 -1.9923 22 6 7.8926 -3.7377 -0.5189 23 7 8.9515 -3.6878 0.2733 24 6 8.8474 -3.4771 1.5687 25 6 7.6125 -3.2974 2.1646 26 6 6.4744 -3.3431 1.3767 27 6 6.6235 -3.5682 0.0104 28 1 -0.4850 0.8401 0.0004 29 1 -0.2099 -1.5016 1.4705 30 1 -1.3761 -3.6157 1.9206 31 1 -0.5290 -5.7232 0.9745 32 1 1.4917 -5.7365 -0.4282 33 1 3.0739 -2.7322 -1.7361 34 1 3.0093 -4.5097 -1.8039 35 1 4.7423 -3.9018 -2.7552 36 1 5.8900 -2.5491 -2.5710 37 1 6.6075 -5.5070 -2.2655 38 1 6.9332 -4.5271 -3.7178 39 1 8.8956 -4.7094 -2.1292 40 1 8.3849 -3.0416 -2.4722 41 1 9.7406 -3.4395 2.1748 42 1 7.5368 -3.1237 3.2279 43 1 5.4951 -3.2080 1.8113 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777286664.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:03 Heat of formation + Delta-G solvation = 25.658828 kcal Electronic energy + Delta-G solvation = -27001.382155 eV Core-core repulsion = 23397.002043 eV Total energy + Delta-G solvation = -3604.380113 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.14139 -39.07966 -37.50825 -36.63987 -33.67788 -33.60358 -32.26301 -31.01202 -30.53455 -29.49142 -27.09223 -25.86002 -25.09487 -23.61899 -23.50648 -21.03627 -20.89357 -20.09396 -18.87876 -17.27053 -17.11662 -17.01567 -16.32107 -15.69988 -15.36072 -15.20969 -14.61648 -14.46710 -14.21541 -13.79892 -13.65289 -13.61580 -13.25115 -12.91419 -12.89082 -12.66547 -12.53822 -11.82647 -11.64245 -11.60658 -11.34920 -11.24538 -11.18491 -11.12919 -11.01727 -10.74313 -10.44534 -10.39037 -9.82910 -9.55783 -9.42519 -9.29948 -9.23778 -8.83411 -7.82934 -7.37432 -7.33456 -6.75546 -4.42409 1.19174 1.47582 2.68522 2.84846 3.01421 3.02804 3.05976 3.12945 3.22454 3.89572 3.93419 4.22428 4.61070 4.62474 4.75843 4.76097 4.94067 5.09933 5.20645 5.28709 5.41258 5.49632 5.52977 5.61564 5.67494 5.70428 5.85297 5.91044 5.91576 6.02916 6.19611 6.22379 6.31566 6.44937 6.47802 6.48941 6.72974 7.03449 7.07105 7.24065 7.36469 7.43524 7.60048 7.85933 8.00225 8.07483 8.07916 8.25421 8.47171 8.59650 8.85625 8.94948 10.17660 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012201 B = 0.004543 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.353794 B = 6161.973359 C = 6964.214640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.077 3.923 3 Si 0.903 3.097 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.459 4.459 8 H 0.071 0.929 9 C 0.128 3.872 10 C -0.155 4.155 11 C -0.107 4.107 12 C -0.236 4.236 13 C -0.079 4.079 14 C -0.186 4.186 15 C -0.066 4.066 16 C 0.519 3.481 17 O -0.496 6.496 18 N -0.561 5.561 19 C 0.099 3.901 20 C -0.135 4.135 21 C -0.063 4.063 22 C 0.084 3.916 23 N -0.470 5.470 24 C 0.065 3.935 25 C -0.154 4.154 26 C -0.111 4.111 27 C 0.123 3.877 28 H 0.280 0.720 29 H 0.120 0.880 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.151 0.849 42 H 0.134 0.866 43 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.830 -4.309 -4.874 13.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.489 4.489 8 H 0.089 0.911 9 C 0.126 3.874 10 C -0.174 4.174 11 C -0.125 4.125 12 C -0.255 4.255 13 C -0.097 4.097 14 C -0.187 4.187 15 C -0.105 4.105 16 C 0.310 3.690 17 O -0.370 6.370 18 N -0.286 5.286 19 C -0.023 4.023 20 C -0.173 4.173 21 C -0.101 4.101 22 C -0.056 4.056 23 N -0.179 5.179 24 C -0.094 4.094 25 C -0.174 4.174 26 C -0.139 4.139 27 C 0.025 3.975 28 H 0.091 0.909 29 H 0.138 0.862 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.100 0.900 35 H 0.118 0.882 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.169 0.831 42 H 0.152 0.848 43 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 12.253 -4.340 -4.656 13.808 hybrid contribution -0.410 0.964 0.481 1.153 sum 11.844 -3.376 -4.174 13.004 Atomic orbital electron populations 1.69784 1.07350 1.29134 1.36048 1.25844 0.94754 1.01017 0.92368 0.86449 0.80183 0.80646 0.79972 1.19065 1.20211 1.18919 1.19404 0.95775 0.90611 1.43103 0.91107 1.17337 0.91141 0.91198 0.87770 1.21352 0.98414 0.96601 1.01033 1.20712 0.98578 0.93541 0.99719 1.20333 1.00753 0.96492 1.07922 1.20298 0.95660 0.95404 0.98361 1.19040 0.98570 0.94516 1.06616 1.20324 0.89995 1.03168 0.97063 1.21636 0.83324 0.74328 0.89698 1.90479 1.85234 1.45472 1.15791 1.46018 1.04812 1.70752 1.07007 1.22047 1.00387 1.00873 0.78955 1.21903 0.94200 0.99724 1.01496 1.20257 0.98344 1.02458 0.89006 1.20836 0.87078 1.01196 0.96509 1.67399 1.32313 1.12505 1.05723 1.22483 0.97241 0.99024 0.90695 1.22143 0.93044 1.00941 1.01288 1.22742 1.02513 0.96482 0.92142 1.18703 0.87505 0.99605 0.91654 0.90868 0.86243 0.89484 0.89574 0.89719 0.88168 0.90027 0.88206 0.90357 0.90823 0.89149 0.89504 0.89944 0.83149 0.84768 0.80402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.14 10.85 55.55 0.60 -19.53 16 2 C 0.08 1.90 5.23 -17.34 -0.09 1.81 16 3 Si 0.90 18.59 29.58 -169.99 -5.03 13.57 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.46 -11.70 8.11 -37.75 -0.31 -12.00 16 8 H 0.07 1.76 6.72 -52.48 -0.35 1.41 16 9 C 0.13 3.30 5.56 -106.83 -0.59 2.71 16 10 C -0.15 -4.02 8.67 -38.88 -0.34 -4.36 16 11 C -0.11 -2.54 10.02 -39.66 -0.40 -2.94 16 12 C -0.24 -5.34 10.05 -39.29 -0.39 -5.73 16 13 C -0.08 -1.76 9.66 -39.66 -0.38 -2.14 16 14 C -0.19 -4.28 4.44 -103.91 -0.46 -4.75 16 15 C -0.07 -1.23 3.60 -29.03 -0.10 -1.33 16 16 C 0.52 9.89 7.16 -10.98 -0.08 9.81 16 17 O -0.50 -11.18 12.74 5.55 0.07 -11.10 16 18 N -0.56 -8.89 2.97 -112.79 -0.34 -9.23 16 19 C 0.10 1.12 6.16 -3.56 -0.02 1.10 16 20 C -0.13 -1.24 6.10 -26.60 -0.16 -1.40 16 21 C -0.06 -0.67 6.00 -27.97 -0.17 -0.84 16 22 C 0.08 1.22 6.66 -82.26 -0.55 0.67 16 23 N -0.47 -6.97 10.23 -9.33 -0.10 -7.07 16 24 C 0.06 0.87 11.17 -17.61 -0.20 0.68 16 25 C -0.15 -2.19 10.12 -39.47 -0.40 -2.59 16 26 C -0.11 -1.92 8.97 -39.10 -0.35 -2.27 16 27 C 0.12 2.02 6.31 -83.60 -0.53 1.49 16 28 H 0.28 6.50 8.30 -40.82 -0.34 6.17 16 29 H 0.12 3.21 6.19 -52.48 -0.32 2.88 16 30 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 31 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.08 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.10 1.82 7.00 -51.93 -0.36 1.46 16 34 H 0.08 1.25 7.54 -51.93 -0.39 0.86 16 35 H 0.10 0.97 6.29 -51.93 -0.33 0.65 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 42 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 43 H 0.18 3.53 5.06 -53.23 -0.27 3.26 16 LS Contribution 349.77 15.07 5.27 5.27 Total: -1.00 -30.46 349.77 -10.43 -40.89 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -5.39 Total: 9.30 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: -5.52 Total: -22.09 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: 0.17 Total: -35.83 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.07 Total: -11.10 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.46 -10.43 -40.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777286664.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.546 kcal (2) G-P(sol) polarization free energy of solvation -30.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds