Wall clock time and date at job start Tue Mar 31 2020 13:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86807 * 119.99783 * 2 1 4 4 H 1.48502 * 109.46858 * 240.00113 * 3 2 1 5 5 H 1.48504 * 109.46983 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47097 * 120.00472 * 3 2 1 7 7 C 1.39944 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99643 * 167.74878 * 7 2 1 9 9 C 1.41387 * 120.00005 * 347.74723 * 7 2 1 10 10 C 1.40732 * 120.24955 * 332.35332 * 9 7 2 11 11 C 1.37591 * 119.75115 * 180.32467 * 10 9 7 12 12 C 1.38657 * 120.24608 * 359.65408 * 11 10 9 13 13 C 1.38614 * 120.50063 * 0.03071 * 12 11 10 14 14 C 1.37643 * 120.24925 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.12787 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.46838 * 264.99698 * 15 14 13 17 17 O 1.21286 * 119.99657 * 6.07655 * 16 15 14 18 18 N 1.34773 * 119.99907 * 186.08216 * 16 15 14 19 19 C 1.46972 * 120.57529 * 354.03698 * 18 16 15 20 20 C 1.53426 * 107.74284 * 224.35138 * 19 18 16 21 21 C 1.52835 * 108.90794 * 296.76987 * 20 19 18 22 22 C 1.50701 * 110.49550 * 51.62230 * 21 20 19 23 23 N 1.32339 * 118.77491 * 159.28714 * 22 21 20 24 24 C 1.31663 * 122.12655 * 179.75040 * 23 22 21 25 25 C 1.38284 * 121.01984 * 0.03254 * 24 23 22 26 26 C 1.38494 * 118.97484 * 0.06191 * 25 24 23 27 27 C 1.38545 * 121.24974 * 339.16867 * 22 21 20 28 28 H 0.97004 * 119.99996 * 359.97438 * 1 2 3 29 29 H 1.08008 * 120.12468 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.88100 * 179.68178 * 11 10 9 31 31 H 1.07999 * 119.75420 * 180.02562 * 12 11 10 32 32 H 1.07997 * 119.87561 * 179.97438 * 13 12 11 33 33 H 1.08994 * 109.47103 * 144.99787 * 15 14 13 34 34 H 1.08999 * 109.46955 * 24.99562 * 15 14 13 35 35 H 1.08997 * 109.80644 * 343.91578 * 19 18 16 36 36 H 1.09002 * 109.80227 * 104.73625 * 19 18 16 37 37 H 1.08997 * 109.56558 * 56.60287 * 20 19 18 38 38 H 1.09003 * 109.56439 * 176.94423 * 20 19 18 39 39 H 1.08996 * 109.27149 * 171.88047 * 21 20 19 40 40 H 1.08995 * 109.27045 * 291.38950 * 21 20 19 41 41 H 1.07999 * 119.49222 * 180.31213 * 24 23 22 42 42 H 1.08003 * 120.51194 * 180.08713 * 25 24 23 43 43 H 1.07995 * 120.80548 * 179.91732 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6965 -1.2125 5 1 1.2771 2.7465 0.0006 6 1 3.0960 1.6965 1.2124 7 6 2.0079 -1.2120 -0.0005 8 1 3.0695 -1.2225 -0.1990 9 6 1.3251 -2.4226 0.2588 10 6 0.1645 -2.4255 1.0546 11 6 -0.4881 -3.6104 1.3059 12 6 -0.0103 -4.7977 0.7725 13 6 1.1282 -4.8059 -0.0182 14 6 1.7978 -3.6325 -0.2818 15 6 3.0356 -3.6447 -1.1412 16 6 4.2570 -3.7226 -0.2617 17 8 4.1336 -3.8751 0.9352 18 7 5.4862 -3.6226 -0.8052 19 6 5.6565 -3.5686 -2.2640 20 6 6.8158 -4.5028 -2.6344 21 6 8.0995 -3.9777 -1.9923 22 6 7.8926 -3.7377 -0.5189 23 7 8.9515 -3.6878 0.2733 24 6 8.8474 -3.4771 1.5687 25 6 7.6125 -3.2974 2.1646 26 6 6.4744 -3.3431 1.3767 27 6 6.6235 -3.5682 0.0104 28 1 -0.4850 0.8401 0.0004 29 1 -0.2099 -1.5016 1.4705 30 1 -1.3761 -3.6157 1.9206 31 1 -0.5290 -5.7232 0.9745 32 1 1.4917 -5.7365 -0.4282 33 1 3.0739 -2.7322 -1.7361 34 1 3.0093 -4.5097 -1.8039 35 1 4.7423 -3.9018 -2.7552 36 1 5.8900 -2.5491 -2.5710 37 1 6.6075 -5.5070 -2.2655 38 1 6.9332 -4.5271 -3.7178 39 1 8.8956 -4.7094 -2.1292 40 1 8.3849 -3.0416 -2.4722 41 1 9.7406 -3.4395 2.1748 42 1 7.5368 -3.1237 3.2279 43 1 5.4951 -3.2080 1.8113 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777286664.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:02 Heat of formation + Delta-G solvation = 9.892638 kcal Electronic energy + Delta-G solvation = -27002.065829 eV Core-core repulsion = 23397.002043 eV Total energy + Delta-G solvation = -3605.063786 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.33111 -40.43833 -39.18258 -37.80504 -35.51357 -34.72031 -33.79861 -32.20574 -31.68946 -31.32634 -28.67360 -27.10398 -26.69815 -24.76619 -24.62328 -22.84378 -22.26636 -21.41448 -20.23953 -19.07179 -18.38498 -18.24171 -17.37987 -17.33385 -16.72345 -16.45405 -16.28874 -15.73305 -15.53981 -15.17807 -15.13481 -14.76713 -14.53369 -14.39781 -14.06016 -13.83047 -13.82261 -13.54864 -13.37774 -12.93066 -12.83609 -12.77337 -12.54994 -12.51157 -12.14716 -12.10422 -11.95972 -11.55222 -11.35458 -11.23312 -11.11182 -11.07718 -10.44370 -10.12217 -9.22570 -9.18591 -8.99834 -8.58893 -6.34045 0.05981 0.26332 0.95315 1.10613 1.33356 1.42762 1.50151 1.63894 1.82314 2.16955 2.77409 2.81973 3.29044 3.50714 3.68816 3.84051 3.91862 4.00394 4.05845 4.17683 4.22650 4.32740 4.35676 4.46649 4.55549 4.59175 4.64799 4.69109 4.73187 4.76726 4.98014 5.01698 5.04960 5.09318 5.16881 5.25353 5.28924 5.35495 5.39364 5.52406 5.74647 5.88367 6.00667 6.12972 6.19522 6.25070 6.39258 6.71382 6.95908 6.96605 7.08273 7.10535 8.36311 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012201 B = 0.004543 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.353794 B = 6161.973359 C = 6964.214640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.039 3.961 3 Si 0.966 3.034 4 H -0.254 1.254 5 H -0.266 1.266 6 H -0.273 1.273 7 C -0.482 4.482 8 H 0.067 0.933 9 C 0.096 3.904 10 C -0.188 4.188 11 C -0.117 4.117 12 C -0.238 4.238 13 C -0.089 4.089 14 C -0.188 4.188 15 C -0.061 4.061 16 C 0.516 3.484 17 O -0.544 6.544 18 N -0.556 5.556 19 C 0.085 3.915 20 C -0.124 4.124 21 C -0.064 4.064 22 C 0.086 3.914 23 N -0.482 5.482 24 C 0.070 3.930 25 C -0.157 4.157 26 C -0.141 4.141 27 C 0.098 3.902 28 H 0.285 0.715 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.103 0.897 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.131 0.869 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.187 0.813 42 H 0.155 0.845 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.102 -5.099 -6.899 16.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.176 4.176 3 Si 0.788 3.212 4 H -0.177 1.177 5 H -0.190 1.190 6 H -0.198 1.198 7 C -0.512 4.512 8 H 0.085 0.915 9 C 0.094 3.906 10 C -0.208 4.208 11 C -0.136 4.136 12 C -0.257 4.257 13 C -0.107 4.107 14 C -0.190 4.190 15 C -0.101 4.101 16 C 0.308 3.692 17 O -0.421 6.421 18 N -0.280 5.280 19 C -0.035 4.035 20 C -0.162 4.162 21 C -0.101 4.101 22 C -0.054 4.054 23 N -0.191 5.191 24 C -0.089 4.089 25 C -0.177 4.177 26 C -0.169 4.169 27 C 0.000 4.000 28 H 0.096 0.904 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.121 0.879 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.106 0.894 37 H 0.084 0.916 38 H 0.149 0.851 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.204 0.796 42 H 0.172 0.828 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 14.547 -5.138 -6.723 16.829 hybrid contribution -1.068 1.104 1.155 1.922 sum 13.479 -4.034 -5.568 15.132 Atomic orbital electron populations 1.69853 1.08591 1.30134 1.36830 1.26575 0.95442 1.03863 0.91694 0.85492 0.79007 0.76916 0.79819 1.17746 1.19007 1.19836 1.19525 0.95628 0.91501 1.44563 0.91495 1.17710 0.91651 0.92690 0.88553 1.21350 0.99911 0.96768 1.02767 1.20971 0.99152 0.93432 1.00028 1.20737 1.00870 0.97062 1.07073 1.20730 0.95421 0.96453 0.98076 1.19509 0.99720 0.93852 1.05942 1.20319 0.88106 1.04974 0.96664 1.21601 0.84474 0.74101 0.89015 1.90484 1.86141 1.47940 1.17574 1.46011 1.03651 1.69527 1.08825 1.22490 1.02387 1.02355 0.76241 1.21910 0.92218 0.98357 1.03687 1.20435 0.99590 1.03702 0.86383 1.21460 0.86046 0.99451 0.98466 1.67548 1.32280 1.12950 1.06322 1.23061 0.97994 0.97070 0.90729 1.22376 0.92593 1.00511 1.02192 1.22636 1.02174 0.98554 0.93551 1.18906 0.88495 1.01042 0.91521 0.90388 0.88331 0.87698 0.86694 0.86548 0.87928 0.86214 0.86525 0.89377 0.91551 0.85136 0.88189 0.88372 0.79597 0.82781 0.83636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.35 10.85 21.83 0.24 -43.11 16 2 C 0.04 1.94 5.23 85.26 0.45 2.39 16 3 Si 0.97 38.87 29.58 68.60 2.03 40.90 16 4 H -0.25 -9.60 7.11 99.48 0.71 -8.90 16 5 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 6 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.48 -25.53 8.11 23.46 0.19 -25.34 16 8 H 0.07 3.47 6.72 -2.91 -0.02 3.45 16 9 C 0.10 5.15 5.56 -21.29 -0.12 5.03 16 10 C -0.19 -10.26 8.67 22.73 0.20 -10.06 16 11 C -0.12 -5.69 10.02 22.22 0.22 -5.47 16 12 C -0.24 -10.62 10.05 22.46 0.23 -10.39 16 13 C -0.09 -3.88 9.66 22.22 0.21 -3.66 16 14 C -0.19 -8.77 4.44 -19.40 -0.09 -8.85 16 15 C -0.06 -2.24 3.60 29.10 0.10 -2.14 16 16 C 0.52 19.87 7.16 87.66 0.63 20.50 16 17 O -0.54 -25.63 12.74 -3.05 -0.04 -25.67 16 18 N -0.56 -17.29 2.97 -629.16 -1.87 -19.16 16 19 C 0.09 1.71 6.16 86.43 0.53 2.24 16 20 C -0.12 -1.82 6.10 30.68 0.19 -1.63 16 21 C -0.06 -1.15 6.00 29.79 0.18 -0.97 16 22 C 0.09 2.35 6.66 42.56 0.28 2.63 16 23 N -0.48 -13.29 10.23 -183.42 -1.88 -15.17 16 24 C 0.07 1.76 11.17 84.73 0.95 2.70 16 25 C -0.16 -4.42 10.12 22.34 0.23 -4.20 16 26 C -0.14 -5.06 8.97 22.58 0.20 -4.86 16 27 C 0.10 3.19 6.31 38.15 0.24 3.43 16 28 H 0.29 13.67 8.30 -92.71 -0.77 12.90 16 29 H 0.10 5.64 6.19 -2.91 -0.02 5.63 16 30 H 0.10 4.53 8.06 -2.91 -0.02 4.50 16 31 H 0.12 4.38 8.06 -2.91 -0.02 4.35 16 32 H 0.12 4.27 8.06 -2.91 -0.02 4.25 16 33 H 0.10 3.68 7.00 -2.39 -0.02 3.67 16 34 H 0.12 3.35 7.54 -2.39 -0.02 3.33 16 35 H 0.12 1.91 6.29 -2.39 -0.02 1.89 16 36 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.19 3.18 8.06 -2.91 -0.02 3.16 16 42 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 43 H 0.15 6.24 5.06 -14.64 -0.07 6.17 16 Total: -1.00 -70.52 349.77 4.28 -66.24 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: 0.98 Total: 34.62 kcal Atomic # 6 Polarization: -43.46 SS G_CDS: 4.82 Total: -38.64 kcal Atomic # 7 Polarization: -73.94 SS G_CDS: -3.51 Total: -77.44 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.04 Total: -25.67 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Total: -70.52 4.28 -66.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777286664.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.132 kcal (2) G-P(sol) polarization free energy of solvation -70.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds