Wall clock time and date at job start Tue Mar 31 2020 13:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00163 * 2 1 4 4 H 1.48505 * 109.47057 * 270.00335 * 3 2 1 5 5 H 1.48501 * 109.47006 * 30.00302 * 3 2 1 6 6 H 1.48502 * 109.47494 * 150.00043 * 3 2 1 7 7 C 1.37879 * 120.00288 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99339 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00418 * 179.97438 * 7 2 1 10 10 C 1.53123 * 109.52548 * 180.02562 * 9 7 2 11 11 C 1.53033 * 109.27729 * 177.62206 * 10 9 7 12 12 N 1.46845 * 109.52229 * 300.81624 * 11 10 9 13 13 C 1.46908 * 110.99749 * 185.84244 * 12 11 10 14 14 N 1.46496 * 109.46941 * 155.45866 * 13 12 11 15 15 C 1.33899 * 120.92533 * 100.49348 * 14 13 12 16 16 O 1.21823 * 127.08373 * 0.06489 * 15 14 13 17 17 S 1.72217 * 105.83169 * 180.02562 * 15 14 13 18 18 C 1.76564 * 94.66473 * 359.97438 * 17 15 14 19 19 C 1.33295 * 106.53705 * 359.97438 * 18 17 15 20 20 C 1.52344 * 121.75947 * 180.02562 * 19 18 17 21 21 C 1.52957 * 108.87037 * 341.90375 * 20 19 18 22 22 C 1.53174 * 109.58112 * 51.73833 * 21 20 19 23 23 C 1.50354 * 126.97105 * 180.02562 * 18 17 15 24 24 C 1.46846 * 111.20012 * 61.74685 * 12 11 10 25 25 C 1.53042 * 109.52114 * 298.25732 * 24 12 11 26 26 H 0.97000 * 119.99870 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.52474 * 59.87078 * 9 7 2 28 28 H 1.09004 * 109.49999 * 57.67846 * 10 9 7 29 29 H 1.08997 * 109.53327 * 297.58550 * 10 9 7 30 30 H 1.09000 * 109.45706 * 180.80562 * 11 10 9 31 31 H 1.08994 * 109.45638 * 60.83158 * 11 10 9 32 32 H 1.08997 * 109.46927 * 35.45746 * 13 12 11 33 33 H 1.09002 * 109.46916 * 275.45553 * 13 12 11 34 34 H 1.08997 * 109.57344 * 222.08731 * 20 19 18 35 35 H 1.09003 * 109.57170 * 101.71702 * 20 19 18 36 36 H 1.09006 * 109.45207 * 291.70470 * 21 20 19 37 37 H 1.09000 * 109.45925 * 171.77603 * 21 20 19 38 38 H 1.09003 * 109.58761 * 49.96546 * 22 21 20 39 39 H 1.08998 * 109.58929 * 170.40605 * 22 21 20 40 40 H 1.09002 * 109.61914 * 44.81541 * 23 18 17 41 41 H 1.08995 * 109.62072 * 284.26646 * 23 18 17 42 42 H 1.09003 * 109.46336 * 58.26890 * 24 12 11 43 43 H 1.08993 * 109.46715 * 178.23672 * 24 12 11 44 44 H 1.08997 * 109.50217 * 299.23389 * 25 24 12 45 45 H 1.08996 * 109.53299 * 179.13670 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0233 -2.6372 -0.0023 11 6 5.5524 -2.6310 -0.0628 12 7 5.9925 -1.9358 -1.2790 13 6 7.4495 -2.0305 -1.4415 14 7 7.7939 -1.8781 -2.8573 15 6 8.2468 -0.7115 -3.3336 16 8 8.4269 0.3175 -2.7069 17 16 8.5233 -0.9658 -5.0143 18 6 8.0085 -2.6546 -4.9906 19 6 7.6622 -2.9281 -3.7328 20 6 7.1604 -4.3062 -3.3208 21 6 6.7153 -5.0651 -4.5720 22 6 7.8350 -5.0338 -5.6168 23 6 7.9675 -3.6039 -6.1558 24 6 5.5532 -0.5346 -1.2782 25 6 4.0240 -0.4781 -1.2539 26 1 -0.4850 0.8401 0.0004 27 1 3.8762 -0.6786 0.8874 28 1 3.6268 -3.1632 -0.8708 29 1 3.6971 -3.1403 0.9080 30 1 5.9193 -3.6573 -0.0782 31 1 5.9483 -2.1169 0.8129 32 1 7.7922 -3.0025 -1.0868 33 1 7.9316 -1.2421 -0.8634 34 1 6.3165 -4.1989 -2.6394 35 1 7.9629 -4.8546 -2.8274 36 1 5.8219 -4.5948 -4.9831 37 1 6.4925 -6.0992 -4.3095 38 1 8.7742 -5.3384 -5.1551 39 1 7.5906 -5.7116 -6.4347 40 1 8.8874 -3.5141 -6.7336 41 1 7.1109 -3.3704 -6.7881 42 1 5.9492 -0.0303 -0.3967 43 1 5.9207 -0.0381 -2.1762 44 1 3.6275 -0.9701 -2.1421 45 1 3.6979 0.5618 -1.2378 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781572212.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:04 Heat of formation + Delta-G solvation = -9.418761 kcal Electronic energy + Delta-G solvation = -26188.771826 eV Core-core repulsion = 22718.314586 eV Total energy + Delta-G solvation = -3470.457240 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.12632 -38.47917 -38.25599 -35.99510 -33.93750 -31.81699 -31.08063 -30.38852 -29.73063 -27.54663 -25.26727 -23.64265 -23.06816 -22.71349 -21.77180 -21.10049 -19.32399 -18.90818 -18.28099 -16.88837 -16.71278 -16.67841 -15.59200 -15.40136 -14.99867 -14.74608 -14.28551 -14.14677 -13.98733 -13.68597 -13.58216 -13.22641 -13.16147 -12.92920 -12.87598 -12.37642 -12.12068 -11.97188 -11.87093 -11.74399 -11.20987 -11.11231 -11.01998 -10.90677 -10.64610 -10.58120 -10.17893 -10.02029 -9.96149 -9.70094 -9.52436 -9.12588 -8.98616 -8.53298 -8.28022 -7.87871 -6.07897 -4.06633 0.94163 1.34222 1.72158 2.13307 2.73371 3.28055 3.38670 3.39338 3.97120 4.30474 4.40862 4.56820 4.60209 4.71411 4.77418 4.92690 5.08755 5.20098 5.22938 5.25195 5.32488 5.36709 5.51289 5.53633 5.61667 5.70905 5.71986 5.77091 5.80258 5.84201 5.95562 6.04782 6.08923 6.16024 6.29754 6.33973 6.61636 6.66265 6.77639 6.84219 7.12679 7.15258 7.28440 7.38740 7.55850 7.76719 8.51615 8.96117 9.55338 11.05451 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016241 B = 0.004052 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.652219 B = 6909.306127 C = 7557.513887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.071 3.929 3 Si 0.884 3.116 4 H -0.279 1.279 5 H -0.297 1.297 6 H -0.268 1.268 7 C -0.511 4.511 8 H 0.074 0.926 9 C 0.013 3.987 10 C -0.094 4.094 11 C 0.061 3.939 12 N -0.544 5.544 13 C 0.263 3.737 14 N -0.522 5.522 15 C 0.486 3.514 16 O -0.478 6.478 17 S -0.009 6.009 18 C -0.220 4.220 19 C 0.126 3.874 20 C -0.058 4.058 21 C -0.117 4.117 22 C -0.116 4.116 23 C -0.028 4.028 24 C 0.058 3.942 25 C -0.114 4.114 26 H 0.263 0.737 27 H 0.022 0.978 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.033 0.967 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.031 0.969 43 H 0.059 0.941 44 H 0.068 0.932 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.179 -11.767 -9.945 24.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.715 3.285 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.193 1.193 7 C -0.549 4.549 8 H 0.092 0.908 9 C -0.006 4.006 10 C -0.132 4.132 11 C -0.066 4.066 12 N -0.271 5.271 13 C 0.048 3.952 14 N -0.243 5.243 15 C 0.168 3.832 16 O -0.358 6.358 17 S 0.236 5.764 18 C -0.339 4.339 19 C 0.016 3.984 20 C -0.097 4.097 21 C -0.155 4.155 22 C -0.155 4.155 23 C -0.067 4.067 24 C -0.069 4.069 25 C -0.152 4.152 26 H 0.073 0.927 27 H 0.040 0.960 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.118 0.882 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.049 0.951 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 19.372 -10.335 -10.852 24.492 hybrid contribution 0.246 0.888 1.667 1.905 sum 19.618 -9.447 -9.184 23.632 Atomic orbital electron populations 1.69894 1.06250 1.26894 1.50939 1.25004 0.94652 0.98944 0.94483 0.86898 0.79823 0.83800 0.77998 1.20568 1.22456 1.19273 1.21020 0.88722 0.94406 1.50735 0.90808 1.19190 0.96791 0.91842 0.92750 1.21489 0.90704 0.99482 1.01514 1.22188 0.98778 0.96934 0.88741 1.61709 1.09397 1.16339 1.39647 1.22208 0.90475 1.02837 0.79667 1.46247 1.56897 1.09726 1.11403 1.21345 0.82976 0.85294 0.93618 1.90968 1.55788 1.26725 1.62357 1.84858 1.72768 1.09894 1.08840 1.23487 1.15985 0.96882 0.97585 1.20091 0.98843 0.90897 0.88596 1.20768 1.01810 0.87767 0.99391 1.21533 0.98949 1.00467 0.94521 1.21662 0.99334 0.95517 0.98987 1.19921 1.02635 0.91478 0.92708 1.22226 0.98495 0.86448 0.99710 1.22017 0.90913 1.00190 1.02034 0.92689 0.95967 0.91687 0.91975 0.91448 0.94912 0.88411 0.90855 0.88167 0.89937 0.90812 0.90581 0.91416 0.90763 0.90451 0.90180 0.95057 0.92255 0.91371 0.93266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.70 13.96 55.43 0.77 -26.92 16 2 C 0.07 2.04 5.45 -17.82 -0.10 1.95 16 3 Si 0.88 22.50 24.36 -169.99 -4.14 18.36 16 4 H -0.28 -7.01 6.89 56.52 0.39 -6.62 16 5 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 6 H -0.27 -6.58 6.53 56.52 0.37 -6.21 16 7 C -0.51 -14.18 9.15 -34.44 -0.31 -14.50 16 8 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 9 C 0.01 0.30 1.75 -91.65 -0.16 0.14 16 10 C -0.09 -1.74 5.32 -26.65 -0.14 -1.88 16 11 C 0.06 0.90 5.40 -3.84 -0.02 0.88 16 12 N -0.54 -8.47 4.42 -238.58 -1.05 -9.52 16 13 C 0.26 3.45 4.84 -63.31 -0.31 3.14 16 14 N -0.52 -7.11 2.78 -119.55 -0.33 -7.44 16 15 C 0.49 7.65 7.45 53.66 0.40 8.05 16 16 O -0.48 -8.95 16.96 5.08 0.09 -8.87 16 17 S -0.01 -0.11 22.96 -107.50 -2.47 -2.58 16 18 C -0.22 -2.38 6.41 -36.20 -0.23 -2.61 16 19 C 0.13 1.43 6.59 -81.03 -0.53 0.90 16 20 C -0.06 -0.50 5.23 -27.09 -0.14 -0.64 16 21 C -0.12 -0.83 5.85 -26.66 -0.16 -0.98 16 22 C -0.12 -0.70 5.99 -26.44 -0.16 -0.86 16 23 C -0.03 -0.21 6.27 -27.85 -0.17 -0.39 16 24 C 0.06 1.11 5.31 -3.83 -0.02 1.09 16 25 C -0.11 -2.52 4.84 -26.65 -0.13 -2.65 16 26 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 27 H 0.02 0.53 7.19 -51.93 -0.37 0.16 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.07 0.78 7.91 -51.93 -0.41 0.37 16 31 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.10 0.98 7.20 -51.93 -0.37 0.60 16 33 H 0.07 1.04 7.32 -51.93 -0.38 0.66 16 34 H 0.10 1.00 7.52 -51.93 -0.39 0.61 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.62 8.11 -51.93 -0.42 0.19 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.39 8.12 -51.93 -0.42 -0.04 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.06 1.17 6.81 -51.93 -0.35 0.82 16 44 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 45 H 0.05 1.18 3.38 -51.93 -0.18 1.00 16 LS Contribution 353.08 15.07 5.32 5.32 Total: -1.00 -32.21 353.08 -11.13 -43.34 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -7.13 Total: -3.33 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -2.19 Total: -8.36 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: -0.61 Total: -43.88 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.09 Total: -8.87 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.14 Total: 18.36 kcal Atomic # 16 Polarization: -0.11 SS G_CDS: -2.47 Total: -2.58 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.21 -11.13 -43.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781572212.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.922 kcal (2) G-P(sol) polarization free energy of solvation -32.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds