Wall clock time and date at job start Tue Mar 31 2020 13:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00163 * 2 1 4 4 H 1.48505 * 109.47057 * 270.00335 * 3 2 1 5 5 H 1.48501 * 109.47006 * 30.00302 * 3 2 1 6 6 H 1.48502 * 109.47494 * 150.00043 * 3 2 1 7 7 C 1.37879 * 120.00288 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99339 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00418 * 179.97438 * 7 2 1 10 10 C 1.53123 * 109.52548 * 180.02562 * 9 7 2 11 11 C 1.53033 * 109.27729 * 177.62206 * 10 9 7 12 12 N 1.46845 * 109.52229 * 300.81624 * 11 10 9 13 13 C 1.46908 * 110.99749 * 185.84244 * 12 11 10 14 14 N 1.46496 * 109.46941 * 155.45866 * 13 12 11 15 15 C 1.33899 * 120.92533 * 100.49348 * 14 13 12 16 16 O 1.21823 * 127.08373 * 0.06489 * 15 14 13 17 17 S 1.72217 * 105.83169 * 180.02562 * 15 14 13 18 18 C 1.76564 * 94.66473 * 359.97438 * 17 15 14 19 19 C 1.33295 * 106.53705 * 359.97438 * 18 17 15 20 20 C 1.52344 * 121.75947 * 180.02562 * 19 18 17 21 21 C 1.52957 * 108.87037 * 341.90375 * 20 19 18 22 22 C 1.53174 * 109.58112 * 51.73833 * 21 20 19 23 23 C 1.50354 * 126.97105 * 180.02562 * 18 17 15 24 24 C 1.46846 * 111.20012 * 61.74685 * 12 11 10 25 25 C 1.53042 * 109.52114 * 298.25732 * 24 12 11 26 26 H 0.97000 * 119.99870 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.52474 * 59.87078 * 9 7 2 28 28 H 1.09004 * 109.49999 * 57.67846 * 10 9 7 29 29 H 1.08997 * 109.53327 * 297.58550 * 10 9 7 30 30 H 1.09000 * 109.45706 * 180.80562 * 11 10 9 31 31 H 1.08994 * 109.45638 * 60.83158 * 11 10 9 32 32 H 1.08997 * 109.46927 * 35.45746 * 13 12 11 33 33 H 1.09002 * 109.46916 * 275.45553 * 13 12 11 34 34 H 1.08997 * 109.57344 * 222.08731 * 20 19 18 35 35 H 1.09003 * 109.57170 * 101.71702 * 20 19 18 36 36 H 1.09006 * 109.45207 * 291.70470 * 21 20 19 37 37 H 1.09000 * 109.45925 * 171.77603 * 21 20 19 38 38 H 1.09003 * 109.58761 * 49.96546 * 22 21 20 39 39 H 1.08998 * 109.58929 * 170.40605 * 22 21 20 40 40 H 1.09002 * 109.61914 * 44.81541 * 23 18 17 41 41 H 1.08995 * 109.62072 * 284.26646 * 23 18 17 42 42 H 1.09003 * 109.46336 * 58.26890 * 24 12 11 43 43 H 1.08993 * 109.46715 * 178.23672 * 24 12 11 44 44 H 1.08997 * 109.50217 * 299.23389 * 25 24 12 45 45 H 1.08996 * 109.53299 * 179.13670 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0233 -2.6372 -0.0023 11 6 5.5524 -2.6310 -0.0628 12 7 5.9925 -1.9358 -1.2790 13 6 7.4495 -2.0305 -1.4415 14 7 7.7939 -1.8781 -2.8573 15 6 8.2468 -0.7115 -3.3336 16 8 8.4269 0.3175 -2.7069 17 16 8.5233 -0.9658 -5.0143 18 6 8.0085 -2.6546 -4.9906 19 6 7.6622 -2.9281 -3.7328 20 6 7.1604 -4.3062 -3.3208 21 6 6.7153 -5.0651 -4.5720 22 6 7.8350 -5.0338 -5.6168 23 6 7.9675 -3.6039 -6.1558 24 6 5.5532 -0.5346 -1.2782 25 6 4.0240 -0.4781 -1.2539 26 1 -0.4850 0.8401 0.0004 27 1 3.8762 -0.6786 0.8874 28 1 3.6268 -3.1632 -0.8708 29 1 3.6971 -3.1403 0.9080 30 1 5.9193 -3.6573 -0.0782 31 1 5.9483 -2.1169 0.8129 32 1 7.7922 -3.0025 -1.0868 33 1 7.9316 -1.2421 -0.8634 34 1 6.3165 -4.1989 -2.6394 35 1 7.9629 -4.8546 -2.8274 36 1 5.8219 -4.5948 -4.9831 37 1 6.4925 -6.0992 -4.3095 38 1 8.7742 -5.3384 -5.1551 39 1 7.5906 -5.7116 -6.4347 40 1 8.8874 -3.5141 -6.7336 41 1 7.1109 -3.3704 -6.7881 42 1 5.9492 -0.0303 -0.3967 43 1 5.9207 -0.0381 -2.1762 44 1 3.6275 -0.9701 -2.1421 45 1 3.6979 0.5618 -1.2378 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781572212.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:03 Heat of formation + Delta-G solvation = -29.920372 kcal Electronic energy + Delta-G solvation = -26189.660843 eV Core-core repulsion = 22718.314586 eV Total energy + Delta-G solvation = -3471.346256 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.14931 -39.81842 -39.28595 -36.96524 -35.59926 -33.68552 -31.90325 -31.81151 -30.65453 -28.85878 -26.84552 -24.53052 -24.21992 -24.03089 -23.08945 -22.13772 -20.64250 -20.14773 -19.13535 -18.88022 -18.04164 -17.79150 -16.90825 -16.49924 -16.07673 -15.95163 -15.77913 -15.39429 -14.95256 -14.84294 -14.72563 -14.59099 -14.43876 -13.98350 -13.83560 -13.78838 -13.59664 -13.32777 -13.14463 -12.77419 -12.74774 -12.26222 -12.17407 -12.08277 -11.77110 -11.66395 -11.61980 -11.46916 -11.26092 -11.15140 -11.03537 -10.92506 -10.68734 -10.46545 -9.54807 -8.85671 -8.34382 -6.35612 -0.11889 0.36709 0.79799 1.10039 1.22911 1.27392 1.36040 1.74724 2.25340 2.75287 3.01394 3.48642 3.74757 3.88703 3.96073 4.02501 4.07865 4.09764 4.17341 4.21755 4.31329 4.34123 4.48393 4.52235 4.62496 4.66040 4.69201 4.76398 4.85862 4.87830 4.96682 5.04093 5.09291 5.12363 5.16060 5.24357 5.27648 5.45287 5.51083 5.56099 5.60261 5.70859 5.70966 5.92043 5.97987 6.26742 6.29571 6.72092 7.29686 8.82546 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016241 B = 0.004052 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.652219 B = 6909.306127 C = 7557.513887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.017 3.983 3 Si 0.940 3.060 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.254 1.254 7 C -0.510 4.510 8 H 0.041 0.959 9 C 0.011 3.989 10 C -0.089 4.089 11 C 0.068 3.932 12 N -0.545 5.545 13 C 0.264 3.736 14 N -0.521 5.521 15 C 0.466 3.534 16 O -0.524 6.524 17 S -0.011 6.011 18 C -0.212 4.212 19 C 0.110 3.890 20 C -0.054 4.054 21 C -0.116 4.116 22 C -0.109 4.109 23 C -0.031 4.031 24 C 0.073 3.927 25 C -0.108 4.108 26 H 0.265 0.735 27 H 0.016 0.984 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.115 0.885 31 H 0.039 0.961 32 H 0.141 0.859 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.056 0.944 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.027 0.973 43 H 0.047 0.953 44 H 0.054 0.946 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.741 -14.278 -10.510 28.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.180 4.180 3 Si 0.768 3.232 4 H -0.204 1.204 5 H -0.224 1.224 6 H -0.178 1.178 7 C -0.548 4.548 8 H 0.060 0.940 9 C -0.008 4.008 10 C -0.127 4.127 11 C -0.059 4.059 12 N -0.271 5.271 13 C 0.050 3.950 14 N -0.241 5.241 15 C 0.149 3.851 16 O -0.409 6.409 17 S 0.234 5.766 18 C -0.331 4.331 19 C 0.002 3.998 20 C -0.093 4.093 21 C -0.154 4.154 22 C -0.148 4.148 23 C -0.070 4.070 24 C -0.055 4.055 25 C -0.146 4.146 26 H 0.074 0.926 27 H 0.035 0.965 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.133 0.867 31 H 0.057 0.943 32 H 0.159 0.841 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.127 0.873 36 H 0.075 0.925 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.046 0.954 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 21.952 -12.895 -11.435 27.910 hybrid contribution -0.596 1.548 1.755 2.414 sum 21.356 -11.348 -9.681 26.050 Atomic orbital electron populations 1.70023 1.07876 1.27770 1.53128 1.25741 0.95260 1.02328 0.94641 0.85981 0.79083 0.79972 0.78125 1.20397 1.22350 1.17844 1.21396 0.91469 0.92933 1.49028 0.94048 1.19177 0.93614 0.95251 0.92746 1.21379 0.93798 0.95978 1.01533 1.22171 0.95626 0.99563 0.88492 1.61650 1.11337 1.13857 1.40303 1.22359 0.88406 1.04703 0.79544 1.46316 1.56193 1.09647 1.11977 1.21712 0.83410 0.85439 0.94512 1.90927 1.57877 1.28235 1.63836 1.84836 1.72424 1.12347 1.06951 1.24038 1.14891 0.95565 0.98614 1.20671 0.99191 0.91526 0.88456 1.20908 1.02129 0.86196 1.00085 1.21558 0.98575 1.01156 0.94118 1.21664 0.99433 0.94345 0.99334 1.20127 1.03394 0.91808 0.91684 1.21911 0.95779 0.88865 0.98987 1.21841 0.93428 0.98510 1.00832 0.92631 0.96540 0.92424 0.91400 0.86696 0.94292 0.84136 0.92015 0.89185 0.87289 0.92502 0.88550 0.90374 0.88835 0.89120 0.90020 0.95449 0.93426 0.92679 0.95295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.98 13.96 21.45 0.30 -59.68 16 2 C 0.02 1.03 5.45 84.66 0.46 1.49 16 3 Si 0.94 47.37 24.36 68.60 1.67 49.04 16 4 H -0.28 -13.78 6.89 99.48 0.69 -13.09 16 5 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 6 H -0.25 -12.11 6.53 99.48 0.65 -11.46 16 7 C -0.51 -28.97 9.15 25.60 0.23 -28.74 16 8 H 0.04 2.56 7.99 -2.91 -0.02 2.53 16 9 C 0.01 0.50 1.75 -11.46 -0.02 0.48 16 10 C -0.09 -3.14 5.32 30.65 0.16 -2.98 16 11 C 0.07 1.77 5.40 86.32 0.47 2.23 16 12 N -0.54 -15.66 4.42 -908.72 -4.02 -19.68 16 13 C 0.26 6.20 4.84 170.80 0.83 7.02 16 14 N -0.52 -13.25 2.78 -650.80 -1.81 -15.06 16 15 C 0.47 14.54 7.45 129.93 0.97 15.51 16 16 O -0.52 -20.06 16.96 -4.74 -0.08 -20.14 16 17 S -0.01 -0.28 22.96 -56.49 -1.30 -1.58 16 18 C -0.21 -4.11 6.41 24.46 0.16 -3.96 16 19 C 0.11 2.21 6.59 41.11 0.27 2.48 16 20 C -0.05 -0.70 5.23 30.36 0.16 -0.54 16 21 C -0.12 -1.20 5.85 30.64 0.18 -1.02 16 22 C -0.11 -0.86 5.99 30.78 0.18 -0.67 16 23 C -0.03 -0.37 6.27 29.87 0.19 -0.19 16 24 C 0.07 2.71 5.31 86.33 0.46 3.17 16 25 C -0.11 -4.79 4.84 30.65 0.15 -4.64 16 26 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 27 H 0.02 0.78 7.19 -2.39 -0.02 0.76 16 28 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 29 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.11 1.99 7.91 -2.39 -0.02 1.97 16 31 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.14 2.10 7.20 -2.39 -0.02 2.09 16 33 H 0.06 1.65 7.32 -2.39 -0.02 1.63 16 34 H 0.09 1.42 7.52 -2.39 -0.02 1.40 16 35 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.06 0.79 8.11 -2.38 -0.02 0.77 16 37 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.08 0.51 8.12 -2.39 -0.02 0.49 16 39 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.05 1.89 6.81 -2.39 -0.02 1.87 16 44 H 0.05 2.53 8.14 -2.39 -0.02 2.51 16 45 H 0.03 1.38 3.38 -2.39 -0.01 1.37 16 Total: -1.00 -73.93 353.08 0.51 -73.42 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: 0.90 Total: 4.03 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: 4.84 Total: -10.34 kcal Atomic # 7 Polarization: -88.90 SS G_CDS: -5.53 Total: -94.42 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.08 Total: -20.14 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 1.67 Total: 49.04 kcal Atomic # 16 Polarization: -0.28 SS G_CDS: -1.30 Total: -1.58 kcal Total: -73.93 0.51 -73.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781572212.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.496 kcal (2) G-P(sol) polarization free energy of solvation -73.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds